mRNA_E_fasciculatus_S2_contig9979.17961.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9979.17961.1
Unique NamemRNA_E_fasciculatus_S2_contig9979.17961.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9979.17961.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.210e-29
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:   22 RNLTSLDRETKAFKSVMEEKARMTIPVRTTTSFLPAERTARDGNVTRLSTPLAEAGKRSSSGNASSRRGGRRKAQAPLRVVV 267
            R LTSLDRETKAFKS++EEKARMT+PVRTTTSFLPAERTAR+G VTRLSTPLAEAG   SSG  SSRRGGRRKAQAPLRVVV
Sbjct:  922 RYLTSLDRETKAFKSLIEEKARMTVPVRTTTSFLPAERTAREGKVTRLSTPLAEAGNGGSSG--SSRRGGRRKAQAPLRVVV 1001
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BLAST of mRNA_E_fasciculatus_S2_contig9979.17961.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.250e-29
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   22 RNLTSLDRETKAFKSVMEEKARMTIPVRTTTSFLPAERTARDGNVTRLSTPLAEAGKRSSSGNASSRRGGRRKAQAPLRVVV 267
            R LTSLDRETKAFKS++EEKARMT+PVRTTTSFLPAERTAR+G VTRLSTPLAEAGK SSSG  SSR+GGRRKAQA LRVVV
Sbjct:  831 RYLTSLDRETKAFKSLIEEKARMTVPVRTTTSFLPAERTAREGKVTRLSTPLAEAGKGSSSG--SSRKGGRRKAQASLRVVV 910
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9979.17961.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ERCC41.210e-2986.59domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
ERCC42.250e-2986.59domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9979contigE_fasciculatus_S2_contig9979:279..2113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score124.8
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D7FH45
Preferred nameRAD1
Model size386
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
Exons3
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG0442@2759
Cds size315
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842638.544307-UTR-E_fasciculatus_S2_contig9979:278..3461696842638.544307-UTR-E_fasciculatus_S2_contig9979:278..346Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9979 279..346 -
1696842638.5992525-UTR-E_fasciculatus_S2_contig9979:2110..21131696842638.5992525-UTR-E_fasciculatus_S2_contig9979:2110..2113Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9979 2111..2113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842638.5588672-CDS-E_fasciculatus_S2_contig9979:346..3551696842638.5588672-CDS-E_fasciculatus_S2_contig9979:346..355Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9979 347..355 -
1696842638.5758023-CDS-E_fasciculatus_S2_contig9979:1132..13301696842638.5758023-CDS-E_fasciculatus_S2_contig9979:1132..1330Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9979 1133..1330 -
1696842638.5886722-CDS-E_fasciculatus_S2_contig9979:2002..21101696842638.5886722-CDS-E_fasciculatus_S2_contig9979:2002..2110Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9979 2003..2110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9979.17961.1prot_E_fasciculatus_S2_contig9979.17961.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9979 347..2110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9979.17961.1

>prot_E_fasciculatus_S2_contig9979.17961.1 ID=prot_E_fasciculatus_S2_contig9979.17961.1|Name=mRNA_E_fasciculatus_S2_contig9979.17961.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
MFWTCCRNLTSLDRETKAFKSVMEEKARMTIPVRTTTSFLPAERTARDGN
VTRLSTPLAEAGKRSSSGNASSRRGGRRKAQAPLRVVVTFVSSAACFLTC
CQQV*
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mRNA from alignment at E_fasciculatus_S2_contig9979:279..2113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9979.17961.1 ID=mRNA_E_fasciculatus_S2_contig9979.17961.1|Name=mRNA_E_fasciculatus_S2_contig9979.17961.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1835bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9979:279..2113- (Ectocarpus fasciculatus EfasUO2)
AGGATGTTTTGGACATGCTGCAGGAATCTGACGTCACTGGACAGGGAGAC
GAAGGCCTTCAAGAGCGTCATGGAGGAGAAGGCTCGCATGACCATTCCTG
TCAGAACCACTGTGAGAGAGAGCTATGGGATCGTCAGGCAGTCCAGTCTT
GGTTGTTTCTGCAGTCTTTCTTTTTGGAGGGGCAGGTTTTGCTGGCTGCT
TGCGTCGTCTGCCGTTGCTGGTTCGGCTGCCATCGTCGTCGTCGTCGTCG
TTGTTGTTGTTTCTGTTTCTATTTGATGTATATTTTCAAGCTAAGTAAAA
TGGTGTTTGTGAGATATACCTGTTGTCGCGGTTCTTGTTGTGGGGTTTGT
TGTTGATATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTCTCT
CGTTTGCTATTGTCTCCTACTTTCGAGTGATCTAAACGGTTTTATCCCCC
AGCTCCGTTCAGCCTACGGTCAGAGGCAAAGAAGAATAGTGGAGACCGAA
ATCCCCGTTGATTGGCACCCTGCCCTTAACCAGTGCCTGTGATTTTTAAC
CAAGGCCCATATTAAATGACCCCTCCCCAACCCCGCCATGGACGTCTCTC
ACCCTTCTCCTCTTTGTCTGGTGCAACTAATGTACCCCCTCTCCCCCCTT
ATTCCCGTTGCCGTGGCTGTGGTATTTGCAAGCAAGGCCTACACTGACGA
TCCCCTCCCCCCTCATCGTCGTCTCTCGCGTCTCCCCCTTTTATTCCTAC
CGTTGTGCCTTTGGGTGTTGGTTCACCTCACAGACCTCGTTTTTGCCAGC
GGAGCGGACCGCCCGAGATGGAAACGTGACACGGCTTTCCACGCCCCTAG
CAGAGGCTGGCAAGCGTAGCAGCAGCGGTAACGCCAGCAGCAGGAGGGGG
GGGCGTCGTAAGGCACAAGCGCCTCTCAGGGTAGTCGTGACCTTCGTGAG
TTCCGCCGCGTGCTTCCTAACCTGCTGCCAGGTACGGAAATGGCGGTTTG
TATTTTGTCGCCAACATCAACAACAGCTGCGTCAGACTTTGATTGTTCTC
ATGAGGTGTGTACCCTTTTGAGGGCATGTAGTTGGACTGTGGTCGGTACG
GGCGTTTCGTACAGTGCTGGGCAGAGACCGGGCCGATATTGTATGCAAGT
ACAACACCAGCACGACCACCACCAACAACAACCGTAGCAACGCACCGCGC
ACGTCATGCCCAAAAGTGCTTCGACGTAATCTCTTTCAAGGTAGAACTAT
CACGGAGTGCTGTAACGTGTGTCGTTGTGGGTAACGTGTTTCGTTGTGGG
TAACGGGTTTCTGTGCGCTATCTTATCCTGTGTGAGCGTGGTATGGCGTA
TCGTATGCGGTATGTATGTATCTGGCCGCCGGACTCTAACTCCTTTGTGT
GGAGTCTCTCTGTTGCCCAGTGGTTTTCGCTCCCCCTCCCCCGGCTTTAT
GTCCATCCGCCCTCCCTTCTAAGCTTCACAGTTCCCCCGTATGTTATCTT
CCCCCACCGGCCCCCTGCGTCACTTACTCACTCTTCTACATAGTTATCTT
CCTTTCCCAGTCTTCATCCCACCCATCTCCATCCTACGGCCTCCCCCCTT
TTGGAATTGCATCCTCTCCCCGTCTACCCTATTCTGAATCATACTCATAT
CTCCCGTCTGAATGTCTCACTTCTCCCCATCTCCATCTGGTCAATGGTCT
ACCGTAACCGCCTACAGAGGCATACAAAACATGAGCAGCCCTCCCCCCCG
CCTTTCAGCAAGTTTGAGCTGGTCCAGTTCGTCATAGCGGTCGGAGACTC
CGTCCTGACGCCCCACATCTGCGTCGAGCGAAAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9979:279..2113-

>mRNA_E_fasciculatus_S2_contig9979.17961.1 ID=mRNA_E_fasciculatus_S2_contig9979.17961.1|Name=mRNA_E_fasciculatus_S2_contig9979.17961.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9979:279..2113- (Ectocarpus fasciculatus EfasUO2)
ATGTTTTGGACATGCTGCAGGAATCTGACGTCACTGGACAGGGAGACGAA
GGCCTTCAAGAGCGTCATGGAGGAGAAGGCTCGCATGACCATTCCTGTCA
GAACCACTACCTCGTTTTTGCCAGCGGAGCGGACCGCCCGAGATGGAAAC
GTGACACGGCTTTCCACGCCCCTAGCAGAGGCTGGCAAGCGTAGCAGCAG
CGGTAACGCCAGCAGCAGGAGGGGGGGGCGTCGTAAGGCACAAGCGCCTC
TCAGGGTAGTCGTGACCTTCGTGAGTTCCGCCGCGTGCTTCCTAACCTGC
TGCCAGCAAGTTTGA
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