mRNA_E_fasciculatus_S2_contig997.17956.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI) HSP 1 Score: 153 bits (387), Expect = 5.460e-40 Identity = 123/132 (93.18%), Postives = 123/132 (93.18%), Query Frame = 3
Query: 51 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTXXTTTTXKKAAPXXXPATAGAAAKKKP 446
MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTE GTFIKVKASYKVSPEAKK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXT XXTTTTXKKAAPXX PA AAKKKP
Sbjct: 1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTXXXTTTTXKKAAPXXKPA--AGAAKKKP 130
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.690e-23 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 3
Query: 54 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
PTYS M AI ALKER GSS+PA+KK I ATYP+LNF PHQ+R ALKKGTE+G FIKVK+SYK+SPEAKK
Sbjct: 7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKK 77
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: Histone (H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI) HSP 1 Score: 103 bits (257), Expect = 2.080e-22 Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 3
Query: 45 GTMPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
T PTY+ M AI LKERNGSS+ AIKK I ATYPTLNF PHQ+R ALKKG E+G FIK+KASYK+S EAKK
Sbjct: 3 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKK 76
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.920e-22 Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 3
Query: 54 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
PTY+ M AI LKERNGSS+ AIKK I ATYPTLNF PHQ+RGALKKG E+G FIK+KASYK+SPEAKK
Sbjct: 99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKK 169
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 3.310e-21 Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 3
Query: 81 AILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
AI ALKER GSS+PA+KK I ATYP+LNF PHQ+R ALKKGTE+G FIKVK+SYK+SPEAKK
Sbjct: 5 AIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKK 66
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.460e-20 Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 3
Query: 51 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
MP+Y +MAK AILALK+R GSS+PAIK +I A YP++ FLPH LR ALKK EAG IKVKASYK+S + KK
Sbjct: 1 MPSYYDMAKAAILALKDRTGSSLPAIKAYITANYPSVKFLPHALRAALKKAVEAGKLIKVKASYKLSADEKK 72
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.750e-19 Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 3
Query: 81 AILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
AI LKERNGSS+ AIKK I ATYPTLNF PHQ+R ALKKG E+G F+K+KASYK+S EAKK
Sbjct: 5 AIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKK 66
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 3.360e-18 Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 3
Query: 81 AILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAKK 266
AI +LKERNGSS+ AIKK I ATYP LNF PHQ+R ALKKG E G FIKVK+SYK+S EAKK
Sbjct: 5 AIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKK 66
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL4_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 4.700e-18 Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 3
Query: 24 LLLVCIP-------GTMPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVSPEAK 263
+L +C P TMPTY EM K A+LALK+R+GSS AIKK+I+A YP + F H LR ALKKG E+G K+KASYK++ +AK
Sbjct: 2 ILTICPPFSCPPPSATMPTYLEMTKAALLALKDRSGSSNSAIKKYIEANYPGVKFAQHSLRAALKKGVESGMLEKIKASYKLTEKAK 88
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Match: H15 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 4.370e-16 Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 3
Query: 51 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTEAGTFIKVKASYKVS 251
MPTY EM A+ ALKERNGSS+ AIKKHI A+YP+L F H LR ALKKG E+G FIKVK SYK+S
Sbjct: 1 MPTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig997.17956.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig997.17956.1 >prot_E_fasciculatus_S2_contig997.17956.1 ID=prot_E_fasciculatus_S2_contig997.17956.1|Name=mRNA_E_fasciculatus_S2_contig997.17956.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=158bp MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKback to top mRNA from alignment at E_fasciculatus_S2_contig997:9062..13958+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig997.17956.1 ID=mRNA_E_fasciculatus_S2_contig997.17956.1|Name=mRNA_E_fasciculatus_S2_contig997.17956.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4897bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig997:9062..13958+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig997:9062..13958+ >mRNA_E_fasciculatus_S2_contig997.17956.1 ID=mRNA_E_fasciculatus_S2_contig997.17956.1|Name=mRNA_E_fasciculatus_S2_contig997.17956.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=474bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig997:9062..13958+ (Ectocarpus fasciculatus EfasUO2)back to top |