mRNA_E_fasciculatus_S2_contig9960.17952.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9960.17952.1
Unique NamemRNA_E_fasciculatus_S2_contig9960.17952.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9960.17952.1 vs.
Match: HOOK (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L192_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 6.930e-84
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:    4 RQVRELEEKFSTGKQEALKAIGRLEANAREQREESTLLLREQMADHEAKMTALTGEFDRYRQTHTVDDVSYHQDVDQWEMIIATKKKMIGNLQGQLGALEKDKRKLEREKTFYWGQAEELRMSSAAGGRADPSRDADHRQLVEQTKELIEENRELRQRAQENDRGXXXXXXXXXXMSTRSGGRW 555
            RQ+REL EKFSTGKQEALKAIGRLE NAR+QREES LLL+EQMADHEAKM AL+GEF RYR+THTVDD+SY+QDVDQWEM IATKKKMIG+LQGQL ALEKDKRKLEREKTFYWG+AEELRMS+AAGGRADPSRDADH QLVEQT+ELIEENRELRQRAQ+N  G          MSTRSGGRW
Sbjct:  805 RQLRELAEKFSTGKQEALKAIGRLETNARDQREESALLLQEQMADHEAKMAALSGEFARYRETHTVDDISYNQDVDQWEMSIATKKKMIGDLQGQLRALEKDKRKLEREKTFYWGRAEELRMSAAAGGRADPSRDADHLQLVEQTRELIEENRELRQRAQDNSDGGGA-------MSTRSGGRW 981
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9960.17952.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
HOOK6.930e-8482.61domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9960contigE_fasciculatus_S2_contig9960:1095..2609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score283.1
Seed ortholog evalue9.3e-74
Seed eggNOG ortholog2880.D7G849
Model size557
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2APQW@1,2RZH8@2759
Cds size555
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842637.8109922-CDS-E_fasciculatus_S2_contig9960:1094..12651696842637.8109922-CDS-E_fasciculatus_S2_contig9960:1094..1265Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9960 1095..1265 +
1696842637.8211157-CDS-E_fasciculatus_S2_contig9960:1442..15771696842637.8211157-CDS-E_fasciculatus_S2_contig9960:1442..1577Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9960 1443..1577 +
1696842637.830472-CDS-E_fasciculatus_S2_contig9960:1945..21221696842637.830472-CDS-E_fasciculatus_S2_contig9960:1945..2122Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9960 1946..2122 +
1696842637.840328-CDS-E_fasciculatus_S2_contig9960:2536..26081696842637.840328-CDS-E_fasciculatus_S2_contig9960:2536..2608Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9960 2537..2608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9960.17952.1prot_E_fasciculatus_S2_contig9960.17952.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9960 1095..2608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9960.17952.1

>prot_E_fasciculatus_S2_contig9960.17952.1 ID=prot_E_fasciculatus_S2_contig9960.17952.1|Name=mRNA_E_fasciculatus_S2_contig9960.17952.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=185bp
KRQVRELEEKFSTGKQEALKAIGRLEANAREQREESTLLLREQMADHEAK
MTALTGEFDRYRQTHTVDDVSYHQDVDQWEMIIATKKKMIGNLQGQLGAL
EKDKRKLEREKTFYWGQAEELRMSSAAGGRADPSRDADHRQLVEQTKELI
EENRELRQRAQENDRGGGGGGGGGGGMSTRSGGRW
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mRNA from alignment at E_fasciculatus_S2_contig9960:1095..2609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9960.17952.1 ID=mRNA_E_fasciculatus_S2_contig9960.17952.1|Name=mRNA_E_fasciculatus_S2_contig9960.17952.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1515bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9960:1095..2609+ (Ectocarpus fasciculatus EfasUO2)
AAGCGACAGGTGCGAGAGCTGGAGGAGAAGTTCTCAACGGGTAAGCAGGA
GGCTCTGAAGGCCATCGGCCGCCTCGAGGCCAACGCTCGCGAGCAGAGGG
AGGAGTCGACGTTGCTGCTGCGGGAGCAGATGGCGGATCACGAAGCGAAG
ATGACTGCGTTGACCGGCGAGGTATTCGCCGTGGGACTTTGTATTTCTCG
TACAATAAACAATAATTGATTTCATAAACCCTGTCTTGCGGGAGGGGAGG
GGGGACGTTCGCACGTTTGACGGCACTGACAAAAAGAGCTTTGAGGTTGA
CTTACCGTTTTCTACTTCCCGGATGTCCCCGCATTTGTTTCGTGTCAGTT
CGACAGGTACCGCCAGACCCACACCGTGGACGACGTCTCGTACCACCAAG
ACGTGGACCAATGGGAGATGATTATCGCCACCAAGAAGAAAATGATAGGA
AATCTCCAGGGTCAACTGGGCGCGCTAGAGAAGGTGAAAAAAAATATATT
TAAGGTATAAATAGTAGCATGAACAAAGTGGATAATGTATTTACAGTCTA
GATTCTCTCAAGGTGGGTAATCGTTTTTCATGCGTTTCCCGTGCCTTCAT
TTTGTTTCGGGAAACGCGTACCTGTTCTGAATACACAGCAGTGTGAGTAT
GTTTCGATGGAACGTGAGCGAGAGACAATGTTGTTCACGATGCGGTGCGA
GAACCTGCTGTGTACTGCAGGGATGCAAAAGGTCCGTTCGTTCATCTGCA
CGTGGTACGGAAGGTGGCCGAATTCAACGAACCACTGTTATAGTTATAGC
AACTGACGTGCCCCTCCTGTTGGGTCTTGTCGATCGATCGACCTTCCGCA
GGACAAGCGCAAGCTCGAGCGCGAGAAGACCTTCTACTGGGGGCAGGCGG
AGGAGCTCAGAATGTCCTCGGCCGCGGGGGGTAGGGCGGACCCCTCCAGA
GATGCCGATCACCGGCAGCTTGTTGAGCAGACGAAGGAGCTTATCGAGGA
GAACCGCGAGCTGAGGCAGAGGGCACAGGTGCCTAATTTAGATGTCACGG
CTTTTCCGTTACGTGTTTTCTTGCTCTTTCCATCCTAGGGTCCCCCCAGA
GGGTAAGAGGGGTACTCTTAAACTAAACGGAATGTGATGGTTTTTAAGGA
CATCTTTGCTCTATCTCTCTTTCTTTTCTTTTACTTCCCGGTGAGGGTTT
GGTCGTTGCCAGGAAAGGCGGTACGCACGCCACGGTCGCACACGTAAAAA
TGAGGGATTTCTGTTTTCATCGCCATTGTATGATGGGCGTCGATCGATCC
GTACGGTTCGCCCGCAGGCGTTTCCTTAAGGAGAACCTGATCGACCGTCG
TTACTGTCGCTCCGCTCATACGCATTCGATCCCCGATCCCCCGCCCCTTG
ATTCGTTCTCCCCCCTCCCCCCCCCGCCCCCCCACCGCGTAGGAGAATGA
CCGTGGTGGCGGTGGTGGTGGTGGGGGTGGTGGTGGGATGAGCACGCGCA
GCGGTGGGCGGTGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9960:1095..2609+

>mRNA_E_fasciculatus_S2_contig9960.17952.1 ID=mRNA_E_fasciculatus_S2_contig9960.17952.1|Name=mRNA_E_fasciculatus_S2_contig9960.17952.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=555bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9960:1095..2609+ (Ectocarpus fasciculatus EfasUO2)
AAGCGACAGGTGCGAGAGCTGGAGGAGAAGTTCTCAACGGGTAAGCAGGA
GGCTCTGAAGGCCATCGGCCGCCTCGAGGCCAACGCTCGCGAGCAGAGGG
AGGAGTCGACGTTGCTGCTGCGGGAGCAGATGGCGGATCACGAAGCGAAG
ATGACTGCGTTGACCGGCGAGTTCGACAGGTACCGCCAGACCCACACCGT
GGACGACGTCTCGTACCACCAAGACGTGGACCAATGGGAGATGATTATCG
CCACCAAGAAGAAAATGATAGGAAATCTCCAGGGTCAACTGGGCGCGCTA
GAGAAGGACAAGCGCAAGCTCGAGCGCGAGAAGACCTTCTACTGGGGGCA
GGCGGAGGAGCTCAGAATGTCCTCGGCCGCGGGGGGTAGGGCGGACCCCT
CCAGAGATGCCGATCACCGGCAGCTTGTTGAGCAGACGAAGGAGCTTATC
GAGGAGAACCGCGAGCTGAGGCAGAGGGCACAGGAGAATGACCGTGGTGG
CGGTGGTGGTGGTGGGGGTGGTGGTGGGATGAGCACGCGCAGCGGTGGGC
GGTGG
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