mRNA_E_fasciculatus_S2_contig996.17951.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig996.17951.1
Unique NamemRNA_E_fasciculatus_S2_contig996.17951.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: Uncharacterized (protein n=1 Tax=Muricauda eckloniae TaxID=346185 RepID=A0A0Q1BW47_9FLAO)

HSP 1 Score: 214 bits (545), Expect = 3.530e-69
Identity = 115/143 (80.42%), Postives = 132/143 (92.31%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRKQR 435
            MNKTLLILF LLLG+N  YAQRPS ERIKTLKVA+ITE ++LT++EAQSFWPIYN FEEKK  +RRKERV+LR+++ESIG+L+S ESSSLLDK+LAIQKEK++LEQ+FISKIKNVIT KKTLLLLKAEEDFKKRLIQQYRK R
Sbjct:    1 MNKTLLILFTLLLGSNWIYAQRPSGERIKTLKVAYITERINLTSKEAQSFWPIYNDFEEKKQVLRRKERVELRAQIESIGNLSSEESSSLLDKHLAIQKEKYNLEQNFISKIKNVITHKKTLLLLKAEEDFKKRLIQQYRKHR 143          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: hypothetical (protein n=1 Tax=Muricauda amphidinii TaxID=2735167 RepID=UPI001492B94E)

HSP 1 Score: 175 bits (444), Expect = 7.580e-54
Identity = 97/143 (67.83%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRKQR 435
            MNK  LIL A LLGT  FYAQ P  +RIKTLKVAFITE V LT+EEAQSFWPIYN  EEK  AIRRKER   R ++   GDL++GE+S+LLDK LA+Q EKH++ + FIS+I+ VI+PKKTLLL+ AEEDFKKRL+QQYRK+R
Sbjct:    1 MNKNRLILLAFLLGTTWFYAQGPVRDRIKTLKVAFITERVGLTSEEAQSFWPIYNEHEEKLEAIRRKER---RERISLSGDLSNGEASALLDKLLALQNEKHEIHKTFISRIRKVISPKKTLLLMGAEEDFKKRLLQQYRKRR 140          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: Uncharacterized (protein n=3 Tax=Muricauda TaxID=111500 RepID=A0A6I1DZI9_9FLAO)

HSP 1 Score: 172 bits (437), Expect = 9.680e-53
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRK 429
            MNK +LILFALL GT   +AQ P  +RIKTLKVAFITE V LT++EAQ FWPIYNA EE    IRRKER +LRS++    DL+  ESS+LL+  +A+QKEKH+ EQDFI+KI+ VI+ KKTLLL+KAEEDFKKRL+QQYRK
Sbjct:    1 MNKRILILFALLAGTAYLHAQGPVRDRIKTLKVAFITERVGLTSQEAQQFWPIYNAHEETLENIRRKERRELRSRISLAQDLSDSESSTLLNNLMALQKEKHNAEQDFITKIRTVISAKKTLLLIKAEEDFKKRLLQQYRK 141          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: Uncharacterized (protein n=2 Tax=Muricauda parva TaxID=1247520 RepID=A0A285MTM3_9FLAO)

HSP 1 Score: 167 bits (423), Expect = 1.430e-50
Identity = 87/131 (66.41%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 SIMNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEE 393
            SIMNK LLILF  L+G + FYAQ P  ERIKTLKVAFITE+V LT +EAQ+FWPIYN +++    IRR+ER++LRS++  I DL+  ESS+LLDK++AIQKEKH  EQDFISK++NV++PKKT+LLLKAEE
Sbjct:    2 SIMNKKLLILFVFLMGPSWFYAQGPGRERIKTLKVAFITEKVGLTAKEAQTFWPIYNEYDKTLETIRRRERLELRSQISMIQDLSDTESSTLLDKFMAIQKEKHAAEQDFISKVRNVLSPKKTVLLLKAEE 132          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: Uncharacterized (protein n=1 Tax=Muricauda nanhaiensis TaxID=2292706 RepID=A0A371JTS7_9FLAO)

HSP 1 Score: 160 bits (405), Expect = 6.650e-48
Identity = 89/144 (61.81%), Postives = 113/144 (78.47%), Query Frame = 1
Query:    7 MNKT-LLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRKQR 435
            MNK  L+IL A LLGT  FYAQ P+ ERIKTLKVAFITE + LT++EAQSFWPIYN  EEK  AIRRKER +   ++    +L++ E+S LLD+ +A+Q EKH+  + F+SKI+ V++P KTLLLLKAEEDFKKRL+QQYRK++
Sbjct:    1 MNKNRLIILLAFLLGTTWFYAQGPARERIKTLKVAFITERIGLTSQEAQSFWPIYNEHEEKLEAIRRKERHE---RISFADNLSNNEASDLLDRLIALQTEKHEANRFFLSKIRKVLSPNKTLLLLKAEEDFKKRLLQQYRKRK 141          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: Uncharacterized (protein n=1 Tax=Flagellimonas hymeniacidonis TaxID=2603628 RepID=A0A5C8V2L6_9FLAO)

HSP 1 Score: 160 bits (405), Expect = 7.310e-48
Identity = 87/143 (60.84%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRKQR 435
            MNK LL L  L++    FYAQ P+ ERIKTLKVAFITE +SLT+EEAQ FWP+YN  E+    IRRKER++L+SK   + +++S ESS+LLD+Y+A+ + K++ EQDFI+KI+ VI  KKTLLLLKAEEDFKKRL+QQ RK++
Sbjct:    1 MNKRLLALCILMMNVTWFYAQGPARERIKTLKVAFITERLSLTSEEAQLFWPVYNEHEKILEGIRRKERLELKSKAVLLENMSSSESSALLDEYVALHEAKYNAEQDFIAKIRKVIPAKKTLLLLKAEEDFKKRLLQQIRKRK 143          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: Uncharacterized (protein n=1 Tax=Muricauda hymeniacidonis TaxID=2517819 RepID=A0A4Q8QGY4_9FLAO)

HSP 1 Score: 160 bits (404), Expect = 1.000e-47
Identity = 85/141 (60.28%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRK 429
            MNK + I   L       YAQRP  +RIKTLKVAFITE +SL++EEAQ+FWPIYNA +EK   IRR+ER++L++++  + DL + ESS+LL KYL+IQ EKH  +Q+FIS ++ V+ PKK LLLLKAEEDFKKRL+QQYRK
Sbjct:    1 MNKRIPIALVLTFFAFSLYAQRPVRDRIKTLKVAFITERLSLSSEEAQAFWPIYNAHDEKLEGIRRRERLELKTRIPLVQDLTNQESSALLKKYLSIQNEKHQADQEFISNLQGVLAPKKILLLLKAEEDFKKRLLQQYRK 141          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: hypothetical (protein n=1 Tax=unclassified Flagellimonas TaxID=2644544 RepID=UPI0013D178B8)

HSP 1 Score: 155 bits (393), Expect = 4.710e-46
Identity = 78/143 (54.55%), Postives = 109/143 (76.22%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRKQR 435
            MN+ LLI F  LLGTN FYAQRP+ +RIKTLKVA++TE++SLT EEAQ FWP+YNA EE    IR+KER    ++ ++I +L+  E+  ++++++ +Q EKH +EQDFI  +++VI  KK +LL +AE  FKKRLIQQYRK++
Sbjct:    1 MNRALLIAFVFLLGTNWFYAQRPAKDRIKTLKVAYLTEQLSLTKEEAQEFWPVYNAHEEVMDNIRKKERQHFGNRFDNISELSESEADKIIEQFIKLQAEKHKIEQDFIKDLQSVIPSKKVILLFRAERSFKKRLIQQYRKRK 143          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: hypothetical (protein n=1 Tax=Flagellimonas sp. S3867 TaxID=2768063 RepID=UPI0016865F3B)

HSP 1 Score: 153 bits (387), Expect = 3.840e-45
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    7 MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTL 372
            MNK LLIL    +GT+ FYAQ P  ERIKTLKVAFITE V LT +EAQSFWPIYN +EE   AIRR+ERV+LRS++  + DL++ ESS LLDK+L I+KEKH+ EQDFISKI+ VI+PKKTL
Sbjct:    1 MNKKLLILLVCFMGTSWFYAQGPGRERIKTLKVAFITERVGLTAKEAQSFWPIYNEYEEILEAIRRRERVELRSQITMLQDLSNAESSVLLDKFLIIRKEKHEAEQDFISKIRTVISPKKTL 122          
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Match: hypothetical (protein n=1 Tax=Muricauda onchidii TaxID=2562684 RepID=UPI0010A62978)

HSP 1 Score: 153 bits (386), Expect = 6.560e-45
Identity = 81/127 (63.78%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    1 SIMNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSFWPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKEKHDLEQDFISKIKNVITPKKTLLLL 381
             IMNK LLILF   LG++ FYAQ P  ERIKTLKVAFITE V LT++EAQSFWPIYN +EE   +IRR+ER++LRS++ +I  L+  ES++LLDK+LAIQK KH  E+DFI+K++NVI+PKK +LLL
Sbjct:    5 KIMNKKLLILFVFFLGSSWFYAQGPGRERIKTLKVAFITERVGLTSKEAQSFWPIYNDYEETLESIRRQERIELRSRIVTIESLSEEESAALLDKFLAIQKAKHLAEKDFIAKVRNVISPKKMVLLL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig996.17951.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.530e-6980.42protein n=1 Tax=Muricauda eckloniae TaxID=346185 R... [more]
hypothetical7.580e-5467.83protein n=1 Tax=Muricauda amphidinii TaxID=2735167... [more]
Uncharacterized9.680e-5366.67protein n=3 Tax=Muricauda TaxID=111500 RepID=A0A6I... [more]
Uncharacterized1.430e-5066.41protein n=2 Tax=Muricauda parva TaxID=1247520 RepI... [more]
Uncharacterized6.650e-4861.81protein n=1 Tax=Muricauda nanhaiensis TaxID=229270... [more]
Uncharacterized7.310e-4860.84protein n=1 Tax=Flagellimonas hymeniacidonis TaxID... [more]
Uncharacterized1.000e-4760.28protein n=1 Tax=Muricauda hymeniacidonis TaxID=251... [more]
hypothetical4.710e-4654.55protein n=1 Tax=unclassified Flagellimonas TaxID=2... [more]
hypothetical3.840e-4567.21protein n=1 Tax=Flagellimonas sp. S3867 TaxID=2768... [more]
hypothetical6.560e-4563.78protein n=1 Tax=Muricauda onchidii TaxID=2562684 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig996contigE_fasciculatus_S2_contig996:24760..25206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score133.7
Seed ortholog evalue7.2e-29
Seed eggNOG ortholog143224.JQMD01000002_gene454
Model size447
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs1I5A4@117743,2DPE1@1,331PZ@2,4NV5C@976
Cds size441
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842637.7737453-CDS-E_fasciculatus_S2_contig996:24759..252001696842637.7737453-CDS-E_fasciculatus_S2_contig996:24759..25200Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig996 24760..25200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842637.7852008-UTR-E_fasciculatus_S2_contig996:25200..252061696842637.7852008-UTR-E_fasciculatus_S2_contig996:25200..25206Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig996 25201..25206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig996.17951.1prot_E_fasciculatus_S2_contig996.17951.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig996 24760..25200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig996.17951.1

>prot_E_fasciculatus_S2_contig996.17951.1 ID=prot_E_fasciculatus_S2_contig996.17951.1|Name=mRNA_E_fasciculatus_S2_contig996.17951.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=147bp
MNKTLLILFALLLGTNLFYAQRPSWERIKTLKVAFITEEVSLTTEEAQSF
WPIYNAFEEKKHAIRRKERVQLRSKVESIGDLNSGESSSLLDKYLAIQKE
KHDLEQDFISKIKNVITPKKTLLLLKAEEDFKKRLIQQYRKQRNEN*
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mRNA from alignment at E_fasciculatus_S2_contig996:24760..25206-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig996.17951.1 ID=mRNA_E_fasciculatus_S2_contig996.17951.1|Name=mRNA_E_fasciculatus_S2_contig996.17951.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig996:24760..25206- (Ectocarpus fasciculatus EfasUO2)
AGTATTATGAATAAAACACTACTTATACTTTTTGCCTTATTATTGGGAAC TAATTTGTTTTATGCCCAGCGCCCTTCGTGGGAACGTATAAAGACTCTCA AGGTTGCCTTTATTACAGAGGAAGTGAGCCTTACGACTGAAGAAGCACAA TCTTTTTGGCCCATATATAATGCTTTCGAAGAAAAAAAGCATGCTATTAG AAGGAAAGAACGAGTTCAACTAAGGTCTAAGGTAGAATCAATCGGTGATT TGAACAGTGGGGAATCTTCTTCACTTTTAGATAAGTATCTTGCTATACAA AAAGAGAAACACGATTTGGAGCAAGATTTTATTTCAAAAATAAAAAATGT CATCACTCCCAAAAAAACCTTATTGCTTTTAAAAGCCGAGGAAGATTTTA AGAAAAGGCTAATACAGCAATATAGAAAGCAACGAAATGAAAACTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig996:24760..25206-

>mRNA_E_fasciculatus_S2_contig996.17951.1 ID=mRNA_E_fasciculatus_S2_contig996.17951.1|Name=mRNA_E_fasciculatus_S2_contig996.17951.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=441bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig996:24760..25206- (Ectocarpus fasciculatus EfasUO2)
ATGAATAAAACACTACTTATACTTTTTGCCTTATTATTGGGAACTAATTT
GTTTTATGCCCAGCGCCCTTCGTGGGAACGTATAAAGACTCTCAAGGTTG
CCTTTATTACAGAGGAAGTGAGCCTTACGACTGAAGAAGCACAATCTTTT
TGGCCCATATATAATGCTTTCGAAGAAAAAAAGCATGCTATTAGAAGGAA
AGAACGAGTTCAACTAAGGTCTAAGGTAGAATCAATCGGTGATTTGAACA
GTGGGGAATCTTCTTCACTTTTAGATAAGTATCTTGCTATACAAAAAGAG
AAACACGATTTGGAGCAAGATTTTATTTCAAAAATAAAAAATGTCATCAC
TCCCAAAAAAACCTTATTGCTTTTAAAAGCCGAGGAAGATTTTAAGAAAA
GGCTAATACAGCAATATAGAAAGCAACGAAATGAAAACTAG
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