mRNA_E_fasciculatus_S2_contig992.17916.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM2_ECTSI) HSP 1 Score: 206 bits (525), Expect = 6.560e-66 Identity = 114/171 (66.67%), Postives = 114/171 (66.67%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIE EWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE
Sbjct: 19 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIE---------------------------------------------------------EWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 132
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Delta (subunit of GMP phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X9_9STRA) HSP 1 Score: 144 bits (362), Expect = 3.870e-41 Identity = 79/170 (46.47%), Postives = 96/170 (56.47%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
G+ M E++A VP+ ILEC AVSRE+NFTSQEEIRQFRLEQR+FL GAC+E EWFFDFGFVIPGSTNSWQQTIE+A + M +LSG++TIET+F DG+T++ KTLVR+FY
Sbjct: 19 GQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLE---------------------------------------------------------EWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFY 131
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY42_9STRA) HSP 1 Score: 133 bits (335), Expect = 7.270e-36 Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
G D+Y E +A +P IL+CSAVSREINF+S EEI QFRLEQRVFLAG+CIE EW F+FG+VIPGSTN+WQQTIESAG + ML E +SG++TIET F +G++ + KT+ RIFY
Sbjct: 114 GDDVYTAEQEARIPASILKCSAVSREINFSSAEEITQFRLEQRVFLAGSCIE---------------------------------------------------------EWLFEFGYVIPGSTNTWQQTIESAGAENMLDPESISGKLTIETAFYEGQSAIAKTVYRIFY 226
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D6C1_SAPPC) HSP 1 Score: 131 bits (330), Expect = 4.200e-35 Identity = 75/170 (44.12%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 10 KDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
KDMY E +A VP+ IL+C AVSREINF+S+EEI+ FRLEQRVFL G C+E EW F FG+VIPGSTNSWQQTIESAG D ML A+ +SG++TIET F D ++ KT+ RI+YE
Sbjct: 116 KDMYEKEQRAVVPKAILQCLAVSREINFSSKEEIQNFRLEQRVFLHGKCLE---------------------------------------------------------EWLFAFGYVIPGSTNSWQQTIESAGADNMLPADVISGKITIETGFYDADMLIAKTVFRIYYE 228
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LLC5_9STRA) HSP 1 Score: 130 bits (327), Expect = 8.620e-35 Identity = 75/170 (44.12%), Postives = 92/170 (54.12%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
G+D+Y E KA +P IL+CSAVSREINF+S EEI QFRLEQRVFL G+CIE EW F+FG+VIPGSTN+WQQTIESAG + ML E +SG++TIET F DG+ + KT+ RI+Y
Sbjct: 103 GEDIYRVEQKARLPMDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIE---------------------------------------------------------EWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 215
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=G4Z211_PHYSP) HSP 1 Score: 129 bits (323), Expect = 3.530e-34 Identity = 75/170 (44.12%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
G D+Y E KA +P IL+CSAVSREINF+S EEI QFRLEQRVFL G+CIE EW F+FG+VIPGSTN+WQQTIESAG + ML E +SG++TIET F DG+ + KT+ RI+Y
Sbjct: 104 GDDIYRVEQKARLPVDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIE---------------------------------------------------------EWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 216
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Aste57867_22049 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ79_9STRA) HSP 1 Score: 129 bits (323), Expect = 4.720e-34 Identity = 71/171 (41.52%), Postives = 90/171 (52.63%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
GKDMY E KA +P+ IL+CS+VSREINF+S EE+++FRLEQRVF G C+E EW F FG+VIP STN+WQQTI++AG D ML A+ +SG +TIET F D ++ KT+ RIFYE
Sbjct: 115 GKDMYEREQKAVIPKAILKCSSVSREINFSSLEEVKEFRLEQRVFFNGQCLE---------------------------------------------------------EWLFSFGYVIPNSTNTWQQTIDAAGPDAMLPADLISGNITIETGFYDADVVIAKTVYRIFYE 228
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Retinal (rod rhodopsin-sensitive cgmp 3-cyclic phosphodiesterase subunit delta n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3K5_PLAHL) HSP 1 Score: 127 bits (319), Expect = 1.410e-33 Identity = 72/170 (42.35%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
G D+YH E KA +P+ IL+CSA+SREINF+S EEI +FRLEQRVFLAG+CIE EW F FG+VIPGSTN+WQQTIES + ML E ++G++TIET F DG+ + KT+ RI+Y
Sbjct: 104 GTDVYHVEQKAHLPKDILKCSAISREINFSSAEEISKFRLEQRVFLAGSCIE---------------------------------------------------------EWIFSFGYVIPGSTNTWQQTIESDEPENMLDPEAMNGKLTIETAFYDGQLPIAKTVYRIYY 216
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Phosphodiesterase (6D, cGMP-specific, rod, delta n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SN63_9TELE) HSP 1 Score: 127 bits (318), Expect = 1.740e-33 Identity = 74/169 (43.79%), Postives = 102/169 (60.36%), Query Frame = 1
Query: 28 ELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQ---TFRKGVPSWSCCYI-SSGPDHE--GGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
E +A VP++IL+C AVSRE+NF+S E++ +FRLEQ+V G C+E R F + ++LA S + R W + SG E G + TR F P P AEWFF+FGFVIP STN+WQ IE+A E +M+ A L+G + IET F D ++ + VR+FY
Sbjct: 44 EHEARVPKKILKCKAVSRELNFSSSEKLEKFRLEQKVLFKGQCLEGRLSSFDAVQFCAVLARSVPDLSRRVLFEHWQVIFACKSGKASEIIVGCLQTRLRFSPSFP-AEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPANVLTGNVVIETKFYDDELLVSTSRVRLFY 211
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: cGMP (3',5'-cyclic phosphodiesterase subunit delta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTW7_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.940e-33 Identity = 73/170 (42.94%), Postives = 88/170 (51.76%), Query Frame = 1
Query: 10 KDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
KDMY E +A VPR IL+C +VSREINFTS EEIR FRLEQRV+ G C+E EW F FG+VIP STNSWQQTIE+AG D ML+A+ +SG +TIET F D ++ KT+ RI+YE
Sbjct: 104 KDMYDREQRAVVPRDILQCPSVSREINFTSVEEIRDFRLEQRVYFHGKCLE---------------------------------------------------------EWLFTFGYVIPNSTNSWQQTIEAAGPDSMLSADLISGHITIETGFYDADMLIAKTVFRIYYE 216 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig992.17916.1 >prot_E_fasciculatus_S2_contig992.17916.1 ID=prot_E_fasciculatus_S2_contig992.17916.1|Name=mRNA_E_fasciculatus_S2_contig992.17916.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=169bp MYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDback to top mRNA from alignment at E_fasciculatus_S2_contig992:22448..23326- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig992.17916.1 ID=mRNA_E_fasciculatus_S2_contig992.17916.1|Name=mRNA_E_fasciculatus_S2_contig992.17916.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=879bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig992:22448..23326- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig992:22448..23326- >mRNA_E_fasciculatus_S2_contig992.17916.1 ID=mRNA_E_fasciculatus_S2_contig992.17916.1|Name=mRNA_E_fasciculatus_S2_contig992.17916.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=507bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig992:22448..23326- (Ectocarpus fasciculatus EfasUO2)back to top |