mRNA_E_fasciculatus_S2_contig992.17916.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig992.17916.1
Unique NamemRNA_E_fasciculatus_S2_contig992.17916.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM2_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 6.560e-66
Identity = 114/171 (66.67%), Postives = 114/171 (66.67%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
            GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIE                                                         EWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE
Sbjct:   19 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIE---------------------------------------------------------EWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 132          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Delta (subunit of GMP phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.870e-41
Identity = 79/170 (46.47%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
            G+ M   E++A VP+ ILEC AVSRE+NFTSQEEIRQFRLEQR+FL GAC+E                                                         EWFFDFGFVIPGSTNSWQQTIE+A  + M    +LSG++TIET+F DG+T++ KTLVR+FY
Sbjct:   19 GQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLE---------------------------------------------------------EWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFY 131          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY42_9STRA)

HSP 1 Score: 133 bits (335), Expect = 7.270e-36
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
            G D+Y  E +A +P  IL+CSAVSREINF+S EEI QFRLEQRVFLAG+CIE                                                         EW F+FG+VIPGSTN+WQQTIESAG + ML  E +SG++TIET F +G++ + KT+ RIFY
Sbjct:  114 GDDVYTAEQEARIPASILKCSAVSREINFSSAEEITQFRLEQRVFLAGSCIE---------------------------------------------------------EWLFEFGYVIPGSTNTWQQTIESAGAENMLDPESISGKLTIETAFYEGQSAIAKTVYRIFY 226          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D6C1_SAPPC)

HSP 1 Score: 131 bits (330), Expect = 4.200e-35
Identity = 75/170 (44.12%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   10 KDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
            KDMY  E +A VP+ IL+C AVSREINF+S+EEI+ FRLEQRVFL G C+E                                                         EW F FG+VIPGSTNSWQQTIESAG D ML A+ +SG++TIET F D   ++ KT+ RI+YE
Sbjct:  116 KDMYEKEQRAVVPKAILQCLAVSREINFSSKEEIQNFRLEQRVFLHGKCLE---------------------------------------------------------EWLFAFGYVIPGSTNSWQQTIESAGADNMLPADVISGKITIETGFYDADMLIAKTVFRIYYE 228          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LLC5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.620e-35
Identity = 75/170 (44.12%), Postives = 92/170 (54.12%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
            G+D+Y  E KA +P  IL+CSAVSREINF+S EEI QFRLEQRVFL G+CIE                                                         EW F+FG+VIPGSTN+WQQTIESAG + ML  E +SG++TIET F DG+  + KT+ RI+Y
Sbjct:  103 GEDIYRVEQKARLPMDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIE---------------------------------------------------------EWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 215          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: GMP_PDE_delta (domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=G4Z211_PHYSP)

HSP 1 Score: 129 bits (323), Expect = 3.530e-34
Identity = 75/170 (44.12%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
            G D+Y  E KA +P  IL+CSAVSREINF+S EEI QFRLEQRVFL G+CIE                                                         EW F+FG+VIPGSTN+WQQTIESAG + ML  E +SG++TIET F DG+  + KT+ RI+Y
Sbjct:  104 GDDIYRVEQKARLPVDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIE---------------------------------------------------------EWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 216          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Aste57867_22049 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ79_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.720e-34
Identity = 71/171 (41.52%), Postives = 90/171 (52.63%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
            GKDMY  E KA +P+ IL+CS+VSREINF+S EE+++FRLEQRVF  G C+E                                                         EW F FG+VIP STN+WQQTI++AG D ML A+ +SG +TIET F D   ++ KT+ RIFYE
Sbjct:  115 GKDMYEREQKAVIPKAILKCSSVSREINFSSLEEVKEFRLEQRVFFNGQCLE---------------------------------------------------------EWLFSFGYVIPNSTNTWQQTIDAAGPDAMLPADLISGNITIETGFYDADVVIAKTVYRIFYE 228          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Retinal (rod rhodopsin-sensitive cgmp 3-cyclic phosphodiesterase subunit delta n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3K5_PLAHL)

HSP 1 Score: 127 bits (319), Expect = 1.410e-33
Identity = 72/170 (42.35%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    7 GKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
            G D+YH E KA +P+ IL+CSA+SREINF+S EEI +FRLEQRVFLAG+CIE                                                         EW F FG+VIPGSTN+WQQTIES   + ML  E ++G++TIET F DG+  + KT+ RI+Y
Sbjct:  104 GTDVYHVEQKAHLPKDILKCSAISREINFSSAEEISKFRLEQRVFLAGSCIE---------------------------------------------------------EWIFSFGYVIPGSTNTWQQTIESDEPENMLDPEAMNGKLTIETAFYDGQLPIAKTVYRIYY 216          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: Phosphodiesterase (6D, cGMP-specific, rod, delta n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SN63_9TELE)

HSP 1 Score: 127 bits (318), Expect = 1.740e-33
Identity = 74/169 (43.79%), Postives = 102/169 (60.36%), Query Frame = 1
Query:   28 ELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQ---TFRKGVPSWSCCYI-SSGPDHE--GGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 516
            E +A VP++IL+C AVSRE+NF+S E++ +FRLEQ+V   G C+E R   F +    ++LA S    + R     W   +   SG   E   G + TR  F P  P AEWFF+FGFVIP STN+WQ  IE+A E +M+ A  L+G + IET F D   ++  + VR+FY
Sbjct:   44 EHEARVPKKILKCKAVSRELNFSSSEKLEKFRLEQKVLFKGQCLEGRLSSFDAVQFCAVLARSVPDLSRRVLFEHWQVIFACKSGKASEIIVGCLQTRLRFSPSFP-AEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPANVLTGNVVIETKFYDDELLVSTSRVRLFY 211          
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Match: cGMP (3',5'-cyclic phosphodiesterase subunit delta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTW7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.940e-33
Identity = 73/170 (42.94%), Postives = 88/170 (51.76%), Query Frame = 1
Query:   10 KDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEDRFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFLPLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 519
            KDMY  E +A VPR IL+C +VSREINFTS EEIR FRLEQRV+  G C+E                                                         EW F FG+VIP STNSWQQTIE+AG D ML+A+ +SG +TIET F D   ++ KT+ RI+YE
Sbjct:  104 KDMYDREQRAVVPRDILQCPSVSREINFTSVEEIRDFRLEQRVYFHGKCLE---------------------------------------------------------EWLFTFGYVIPNSTNSWQQTIEAAGPDSMLSADLISGHITIETGFYDADMLIAKTVFRIYYE 216          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig992.17916.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GMP_PDE_delta6.560e-6666.67domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Delta3.870e-4146.47subunit of GMP phosphodiesterase n=1 Tax=Tribonema... [more]
GMP_PDE_delta7.270e-3644.12domain-containing protein n=1 Tax=Pythium brassicu... [more]
GMP_PDE_delta4.200e-3544.12domain-containing protein n=2 Tax=Saprolegnia TaxI... [more]
GMP_PDE_delta8.620e-3544.12domain-containing protein n=3 Tax=Phytophthora Tax... [more]
GMP_PDE_delta3.530e-3444.12domain-containing protein n=14 Tax=Phytophthora Ta... [more]
Aste57867_220494.720e-3441.52protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Retinal1.410e-3342.35rod rhodopsin-sensitive cgmp 3-cyclic phosphodiest... [more]
Phosphodiesterase1.740e-3343.796D, cGMP-specific, rod, delta n=1 Tax=Paramormyrop... [more]
cGMP1.940e-3342.943',5'-cyclic phosphodiesterase subunit delta n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig992contigE_fasciculatus_S2_contig992:22448..23326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score200.7
Seed ortholog evalue5.5e-49
Seed eggNOG ortholog2880.D7FJM2
Model size522
KEGG rclassRC00296
KEGG koko:K13758
KEGG ReactionR01234
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG4038@1,KOG4038@2759
Cds size507
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842634.7843184-CDS-E_fasciculatus_S2_contig992:22447..225291696842634.7843184-CDS-E_fasciculatus_S2_contig992:22447..22529Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig992 22448..22529 -
1696842634.8012223-CDS-E_fasciculatus_S2_contig992:22697..228301696842634.8012223-CDS-E_fasciculatus_S2_contig992:22697..22830Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig992 22698..22830 -
1696842634.813955-CDS-E_fasciculatus_S2_contig992:22940..230841696842634.813955-CDS-E_fasciculatus_S2_contig992:22940..23084Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig992 22941..23084 -
1696842634.832548-CDS-E_fasciculatus_S2_contig992:23163..233111696842634.832548-CDS-E_fasciculatus_S2_contig992:23163..23311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig992 23164..23311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842634.843379-UTR-E_fasciculatus_S2_contig992:23311..233261696842634.843379-UTR-E_fasciculatus_S2_contig992:23311..23326Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig992 23312..23326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig992.17916.1prot_E_fasciculatus_S2_contig992.17916.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig992 22448..23311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig992.17916.1

>prot_E_fasciculatus_S2_contig992.17916.1 ID=prot_E_fasciculatus_S2_contig992.17916.1|Name=mRNA_E_fasciculatus_S2_contig992.17916.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=169bp
MYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIED
RFLVFLSRMMSSMLALSQTFRKGVPSWSCCYISSGPDHEGGAIFTRHIFL
PLVPPAEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETT
FLDGRTMLFKTLVRIFYE*
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mRNA from alignment at E_fasciculatus_S2_contig992:22448..23326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig992.17916.1 ID=mRNA_E_fasciculatus_S2_contig992.17916.1|Name=mRNA_E_fasciculatus_S2_contig992.17916.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=879bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig992:22448..23326- (Ectocarpus fasciculatus EfasUO2)
GAAAGGGGCAAGGACATGTACCATCACGAGCTGAAGGCGACCGTCCCCCG ACGAATCCTGGAATGCTCCGCCGTGTCAAGGGAGATTAACTTCACGTCCC AGGAGGAGATACGCCAGTTTCGGCTGGAGCAGAGAGTGTTCTTGGCCGGA GCGTGCATCGAAGGTGGGGTTGCTCATTCGTGATCGTGTTTCCTTTGAGT TGTCACTAGTATCTTCCTCCATGAAGGCGTGGCTTGTCGCAGACAGGTTC CTCGTCTTCCTTTCCAGGATGATGAGTTCGATGTTGGCTCTATCGCAAAC GTTTCGCAAGGGGGTTCCATCATGGAGTTGCTGCTACATCAGCAGTGGTC CTGATCACGAGGGGGGTGCAATCTTTACTCGTCACAGTTCTACGTTGCGA CTCCCATACGATGCCTGTTTGACGAGCTTTTCCCCGGCGTTGTAGTGGTG CAAGCCTCACAATTGTACACACCGAACATCTCATGATGCCACTGAGTTTT CCTTCCTCTCGTCCCGCCCGCAGAATGGTTTTTCGACTTTGGCTTCGTTA TTCCGGGATCAACCAACTCCTGGCAACAAACTATCGAGTCGGCTGGAGAA GATCGGATGCTAGCGGCAGAAGACCTGAGGTATGACGGCGCTCTGGTGCT GCTAGTCGGCATGCTAGTCTGCCTTCGAGAAACGAACTGTGACGTCATAT AGATATCAGAATGTCAAGAAACAACACGTAACGCTCGACTCCCGATGCTG TTTTACGTTAACGATACGTGCTTCTCTCGACGTCATGTTGTACGCAGCGG AAGGATGACGATCGAGACAACGTTCTTAGATGGAAGGACGATGCTGTTCA AGACCCTCGTCAGAATATTCTACGAATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig992:22448..23326-

>mRNA_E_fasciculatus_S2_contig992.17916.1 ID=mRNA_E_fasciculatus_S2_contig992.17916.1|Name=mRNA_E_fasciculatus_S2_contig992.17916.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=507bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig992:22448..23326- (Ectocarpus fasciculatus EfasUO2)
ATGTACCATCACGAGCTGAAGGCGACCGTCCCCCGACGAATCCTGGAATG
CTCCGCCGTGTCAAGGGAGATTAACTTCACGTCCCAGGAGGAGATACGCC
AGTTTCGGCTGGAGCAGAGAGTGTTCTTGGCCGGAGCGTGCATCGAAGAC
AGGTTCCTCGTCTTCCTTTCCAGGATGATGAGTTCGATGTTGGCTCTATC
GCAAACGTTTCGCAAGGGGGTTCCATCATGGAGTTGCTGCTACATCAGCA
GTGGTCCTGATCACGAGGGGGGTGCAATCTTTACTCGTCACATTTTCCTT
CCTCTCGTCCCGCCCGCAGAATGGTTTTTCGACTTTGGCTTCGTTATTCC
GGGATCAACCAACTCCTGGCAACAAACTATCGAGTCGGCTGGAGAAGATC
GGATGCTAGCGGCAGAAGACCTGAGCGGAAGGATGACGATCGAGACAACG
TTCTTAGATGGAAGGACGATGCTGTTCAAGACCCTCGTCAGAATATTCTA
CGAATAA
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