mRNA_E_fasciculatus_S2_contig9916.17910.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9916.17910.1
Unique NamemRNA_E_fasciculatus_S2_contig9916.17910.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ06_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 3.280e-78
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 1
Query:    4 QALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRSNFAVVSSLAT---ALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            QALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFR NFAVVSSLAT   ALCGVAAGCTKTSITSHFALKQNMADISAKE
Sbjct:   94 QALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRGNFAVVSSLATVFKALCGVAAGCTKTSITSHFALKQNMADISAKE 225          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UTE8_DIALT)

HSP 1 Score: 160 bits (406), Expect = 9.370e-47
Identity = 79/133 (59.40%), Postives = 103/133 (77.44%), Query Frame = 1
Query:    1 LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRSNFAVVSS---LATALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            LQALCSYLRG+L  TA+L ASGVG+E AS +AAA+ WVLRDGFGM+GSL+F++   S  D  +KEWRLFAD+ NDVGL+LD+VAP+      +++S   +   +CGVAAG T+ SIT+HFAL+ N+AD+S KE
Sbjct:   78 LQALCSYLRGILTTTAILEASGVGNETASPLAAAVAWVLRDGFGMLGSLIFAFCVGSRFDGGVKEWRLFADLINDVGLSLDMVAPLLPHRVLLLTSCGAMCKTMCGVAAGATRASITAHFALRDNLADVSTKE 210          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTD9_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.510e-43
Identity = 80/133 (60.15%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    4 QALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAP-VFRSNFAVVSSLAT---ALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            QALCSYLRG+    A+L + GVGD NASA++AA+ W+LRDG GM+GSLL SY A S  D+++KEWRLFAD+ NDVGLTLD++AP   R  F +V  L T   A+CGV+AG TK+SIT+H AL  N AD++AKE
Sbjct:   40 QALCSYLRGIFSTRAVLVSVGVGDSNASAMSAAVTWILRDGAGMVGSLLLSYGAGSSFDAHLKEWRLFADVINDVGLTLDMLAPHTPRRYFGLVLGLGTVCKAMCGVSAGATKSSITAHMALTGNTADVAAKE 172          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BID4_PYTIN)

HSP 1 Score: 155 bits (393), Expect = 7.700e-43
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1
Query:    1 LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAP----VFRSNFAVVSSLATALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            +QA+CSYLRGVL   ++L + GVGDENA+ +AAA+ WVLRDG GM+G L F+Y    H DSN+K WRLFAD+ NDVGLTLD++AP    VF +    VSS+   +CGVAAG T++S+ +HFA + NMAD +AKE
Sbjct:  124 IQAMCSYLRGVLATQSVLQSVGVGDENATPLAAALQWVLRDGSGMLGGLAFAYGVGPHFDSNVKRWRLFADVINDVGLTLDMLAPYCPAVFVTELLCVSSICKTMCGVAAGATRSSLMTHFAKRDNMADCAAKE 257          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4R7_9STRA)

HSP 1 Score: 154 bits (388), Expect = 8.330e-42
Identity = 82/134 (61.19%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    4 QALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVA--PVFRSNFAVVSSLATA---LCGVAAGCTKTSITSHFALKQNMADISAKE 390
            QALCSYLRG+L   A+L  SGVG E ASA++AAM WV RDG GM  SLLFS  AS   D N+KEWRLFADI+NDVGLTLD++   P  + +F +++ L+T    +CGVAAGCTK+SIT+HF+L+ N+AD+SAKE
Sbjct:   86 QALCSYLRGILTTKAILEGSGVGSEAASALSAAMNWVFRDGVGMACSLLFSSMASISFDCNVKEWRLFADISNDVGLTLDMLTGLPSLKGHFLLLTCLSTVCKTMCGVAAGCTKSSITAHFSLRGNIADVSAKE 219          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DHG9_EMIHU)

HSP 1 Score: 147 bits (371), Expect = 2.250e-41
Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRSNFAVVSSLA---TALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            +QA CSYLR +L   A+L ASGVG+  AS +AAA+ WVLRDGFGM GSLLF+       D N+KEWRLFAD+ NDVGLTL+++AP+    F +V++L    T++CG+ AG T+ SIT+HFAL  N+AD+SAKE
Sbjct:   81 IQAACSYLRAILSTGAILKASGVGEAAASPMAAAVAWVLRDGFGMCGSLLFASLVGVGFDENVKEWRLFADLINDVGLTLNMLAPMAGERFFLVAALGSTCTSICGMVAGATRASITAHFALSGNLADVSAKE 213          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JJT8_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 4.970e-41
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFR----SNFAVVSSLATA---LCGVAAGCTKTSITSHFALKQNMADISAKE 390
            LQA CSYLR +L  +A+L  +GVG + AS +AAA+ WVLRDG GM GSL+FSY   +  D N+KEWRLFADI ND+GLTLD++AP+      +NF VV++L      +CG+ AG T+ SIT+HFAL+ N+AD+SAKE
Sbjct:   99 LQAACSYLRNILTTSAILRGAGVGKDAASPMAAAIAWVLRDGVGMFGSLVFSYLVGTGFDRNVKEWRLFADIINDLGLTLDMLAPLAGPAGGTNFMVVAALGACCKTICGMTAGATRASITNHFALRNNLADVSAKE 235          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJN0_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 2.090e-40
Identity = 72/132 (54.55%), Postives = 94/132 (71.21%), Query Frame = 1
Query:    4 QALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRSNFAVVSSLAT---ALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            QALCSYLRGVL   A     GVG+  A+A AA + WV++DGFGM+GSLLF+     + D+N+K WRLFAD+ N+VGL LD++AP+ +  F +V   AT   A+CGVAAG TK ++T+HFAL  N AD+ AKE
Sbjct:   39 QALCSYLRGVLAAKAWFEGVGVGNTEATAAAATLQWVMKDGFGMVGSLLFASLCGPYFDTNVKSWRLFADLINNVGLFLDMIAPLTQEYFLLVVCFATICKAMCGVAAGATKAALTAHFALNGNNADVQAKE 170          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Hypothetical (protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2E065_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.120e-40
Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRSNF--------AVVSSLATALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            LQ LCSYLRGV+  +A+L A+GVGD +A+AI AAM W +RDG GMIG L FSY  S H DS++KE+RLFAD+ NDVGLTLD++AP   +++        + +  L    CG+AAG TK SIT HFA++ NMAD++AKE
Sbjct:  116 LQGLCSYLRGVVSTSAVLTAAGVGDGDATAIGAAMTWAMRDGLGMIGGLFFSYITSCHFDSHVKEFRLFADVINDVGLTLDMLAPYIAASYGKKCILFVSAMGQLCRVACGMAAGATKGSITQHFAIRGNMADLNAKE 253          
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NUM1_PHYIT)

HSP 1 Score: 148 bits (374), Expect = 4.270e-40
Identity = 76/133 (57.14%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLLFSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRS---NFAVVSSLATALCGVAAGCTKTSITSHFALKQNMADISAKE 390
            LQA+CSYLRGVL   ++L + GVGD+ A+ +AAA+ WVLRDG GMIG L F+Y      D N+K WRLFAD+ NDVGLTLD+VAP F +       VSS+  A+CGVAAG T++S+ +HFA + NMAD +AKE
Sbjct:  101 LQAMCSYLRGVLATQSVLQSVGVGDDKATPLAAALQWVLRDGSGMIGGLTFAYFVGPKFDVNVKRWRLFADVVNDVGLTLDMVAPYFPTLVTEVLCVSSVCKAMCGVAAGATRSSLMTHFAKRDNMADCAAKE 233          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9916.17910.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.280e-7896.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical9.370e-4759.40protein (Fragment) n=1 Tax=Diacronema lutheri TaxI... [more]
Hypothetical1.510e-4360.15protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Uncharacterized7.700e-4357.46protein n=2 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized8.330e-4261.19protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Uncharacterized2.250e-4157.14protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID... [more]
Hypothetical4.970e-4156.20protein (Fragment) n=1 Tax=Haptolina brevifila Tax... [more]
Hypothetical2.090e-4054.55protein (Fragment) n=1 Tax=Lotharella oceanica Tax... [more]
Hypothetical2.120e-4055.80protein n=3 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized4.270e-4057.14protein n=2 Tax=Phytophthora infestans TaxID=4787 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9916contigE_fasciculatus_S2_contig9916:2992..4844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score243.8
Seed ortholog evalue4.4e-62
Seed eggNOG ortholog2880.D7FQ06
Preferred nameC16orf58
Model size390
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
Cds size390
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842634.1567497-CDS-E_fasciculatus_S2_contig9916:2991..30841696842634.1567497-CDS-E_fasciculatus_S2_contig9916:2991..3084Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9916 2992..3084 -
1696842634.1692286-CDS-E_fasciculatus_S2_contig9916:3994..42151696842634.1692286-CDS-E_fasciculatus_S2_contig9916:3994..4215Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9916 3995..4215 -
1696842634.1793187-CDS-E_fasciculatus_S2_contig9916:4768..48441696842634.1793187-CDS-E_fasciculatus_S2_contig9916:4768..4844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9916 4769..4844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9916.17910.1prot_E_fasciculatus_S2_contig9916.17910.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9916 2992..4844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9916.17910.1

>prot_E_fasciculatus_S2_contig9916.17910.1 ID=prot_E_fasciculatus_S2_contig9916.17910.1|Name=mRNA_E_fasciculatus_S2_contig9916.17910.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=130bp
LQALCSYLRGVLCLTAMLHASGVGDENASAIAAAMVWVLRDGFGMIGSLL
FSYAASSHMDSNIKEWRLFADIANDVGLTLDLVAPVFRSNFAVVSSLATA
LCGVAAGCTKTSITSHFALKQNMADISAKE
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mRNA from alignment at E_fasciculatus_S2_contig9916:2992..4844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9916.17910.1 ID=mRNA_E_fasciculatus_S2_contig9916.17910.1|Name=mRNA_E_fasciculatus_S2_contig9916.17910.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1853bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9916:2992..4844- (Ectocarpus fasciculatus EfasUO2)
TTACAGGCTCTCTGCAGCTACCTCCGCGGCGTACTGTGTCTGACCGCCAT GCTTCACGCCTCGGGTGTCGGAGATGGTGAGTGGAGGTTATTTTAGATGC ATGGTCTGTTCGCGTGTACGTCATGTATCACGACTGGGGTCATTCGCGCG ACCTTCTTGGTAAAAAAGGAGTGATGATAACCCCGACCGTAGCAGTTTGA TTTTCACGCCTCAGCAGTATCATTCTCTATCGTTTTCATCCACAAGAGGC AAGTCGGTGTCTATCCTGCACCAATCCCACTTGCCCTACTCAAGCCAAAG CCTGGTCTAGTTTCGCTCGCGGTGCGTTGCGCTTGCTTGCACATACGTAT GGCGACTGTTCTCGGGCGCGAGGTGAAGGGGGTCATTGCGCCAAAGCGGG GCTAGCCGATCGTCCCGCCCCGCCTCCAAAACGCCGCCGCCATCGCCGTG ATTGCCCCGACTGTGCGAGAGCAGCAGCATCGCGTACACCACGATAGACT GCTCGCGCCGCGAAGAGCGGCCGAATCTTTCCCTCCTTCGATTCATCTCT GTTGGACTTATTTGTCTGCCGTCTCGTCTCGATACTCTGCTCAGTTGCTG CCTCGGCTTCCTCCCTTTGCTCCTGCCAGAAAACGCCTCCGCCATCGCTG CGGCGATGGTTTGGGTGCTGCGGGACGGTTTCGGGATGATCGGGAGCCTG CTGTTCTCCTACGCGGCGTCTTCCCACATGGACAGCAACATCAAGGAGTG GAGGCTGTTCGCCGACATCGCCAACGACGTCGGCCTCACGCTCGACCTCG TGGCGCCGGTGTTCAGGAGCAACTTCGCCGTAGTGTCGTCGCTGGCTACC GTTTGCAAGGCAAGAGAAATAAAAAAGCGGGGACGGCAAAGAGGTAGAGG AAACAAGTGGAAAAGGCTGGGGGGGGGTGGTAGTGGCCACGAGGTCGGCA ACAAAGCGAAGTGCTCTCCGTTCGGTGTGCTTAGTTGGGCAAGCGTGGAC TTTGTATCTCCGCTCAGAACCGGTTGCAGTAGCGGAGAGCCGAGGGATAC AGCGGGAGAGCGTAATGTGTTTTGCTCGTGTGCCCAACAAACGGGAAAAA AGGATGTCCCAAGGCCGTCGGGTTGTAAGCTGGGCGGCACGACCTTGAGC AGCAGAAGACACCATCCCGCCCATTGAACCAATTTTCACGACTCGCCTGT TCCACGAGGTGGAAGCGACCAATGTGCGCATGACAACAAATGACGACGAA AAGCTCCAGACGAAACCATCCCAACACGAGTTGTATCCTTCTGGACATAT GTGCCCTCGCTGTTGTGGCGCACTGGAGCTTCAAAAATGGTCCAGGGGGG CGAATGGTATCTTATACCACGACACATGATGCATTTCTGGACTGCTGTGG CGCATCCTTTCCTGATCGTTATGCGTAGCGACTCACAAAAGCGTATTTTG GCTTGAGGCCCTTCCTTTTGTAGTGGTGGCTCTGAATCCCGGTGACACAC TGCCCTTGATACGGCCGTGGCGGGCCTGCAGCAAGCTTGCCCAGAACACA GTATGACGAGTGCCGGGCACGCTTCGCCGGGGGGCTTCGCCTGCGCTTGT GTGCAAGGTACATCAACAATTTCATTTTTGGCAGTTCGATGTGTAAGCAT GCGAACATTCCTCGCTTTTTCGTGGCCTAACGACCTTCACAACCCTCGCT CGCGGATGCGTCGGCTGGGCATTGTGTTGCCATGCCATGTGGTGCTCGTG TGCACCGCAGGCATTGTGTGGAGTCGCGGCGGGTTGCACGAAGACGTCGA TCACCAGTCACTTCGCCCTGAAACAAAACATGGCCGACATTTCTGCGAAG GAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9916:2992..4844-

>mRNA_E_fasciculatus_S2_contig9916.17910.1 ID=mRNA_E_fasciculatus_S2_contig9916.17910.1|Name=mRNA_E_fasciculatus_S2_contig9916.17910.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9916:2992..4844- (Ectocarpus fasciculatus EfasUO2)
TTACAGGCTCTCTGCAGCTACCTCCGCGGCGTACTGTGTCTGACCGCCAT
GCTTCACGCCTCGGGTGTCGGAGATGAAAACGCCTCCGCCATCGCTGCGG
CGATGGTTTGGGTGCTGCGGGACGGTTTCGGGATGATCGGGAGCCTGCTG
TTCTCCTACGCGGCGTCTTCCCACATGGACAGCAACATCAAGGAGTGGAG
GCTGTTCGCCGACATCGCCAACGACGTCGGCCTCACGCTCGACCTCGTGG
CGCCGGTGTTCAGGAGCAACTTCGCCGTAGTGTCGTCGCTGGCTACCGCA
TTGTGTGGAGTCGCGGCGGGTTGCACGAAGACGTCGATCACCAGTCACTT
CGCCCTGAAACAAAACATGGCCGACATTTCTGCGAAGGAA
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