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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9912.17906.1 vs.
Match: Glycosyl (transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI) HSP 1 Score: 557 bits (1435), Expect = 6.370e-190 Identity = 310/379 (81.79%), Postives = 321/379 (84.70%), Query Frame = 1
Query: 1 MLRPVRNDYKPPSPSPLNSPSRGPAAXXXXXXXXXXXXXXXXXXXXKGQWWRGALVGAVSALIACGAGRLLLGXXXXXXXXXX-------DTQDLAEEEIRNHDGRCPVFNAVTGETKVPDDSK-KKIETLIKPGKAYPIQSQDWATRVYAAKSARSQASKGAAPEEIGRAALSKRLAARQQQGPREESGGTAAVLTLLVADAKKPQPFLSALGRRQSWGPEYRATTAAAGAGEAEWAWEEVFVCEEDETALDGILGSLGEGEAWREALERGMVKLVPCSSGGADERRAGELSLACAAGDASVAEFVWLPGPGVAEALGMADAKLLTPSGRGAEVAAELSRVATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVEAGG 1113
MLRPVR +YKPPSPSPLNSPSR P +GQWWRGALVGAVSALI CGAGR+LLG XXXXX DT+ LAEEE RNH RCPVFNAVTGETKVPDDS KKIETLIKPGKAYPI+SQDWATRVYAAKSARSQASKGA P+EIGRAALSKRLAARQ QGPREESGGTAAVLTLLVADAKKPQPFLSALG RQSW PE+RAT AAAGAGEAEWAWEEVFVCEEDE ALDGILGS GEGEAWREALERG VKLVPCSSGGADERRAGELSLACAAGDASV+EFVW+PGP VAEALGMADAK TPSGRGAEV A LSR A ATGVEGVFGVRGWQRTQDAPRPKRQRRGLLV++GG
Sbjct: 1 MLRPVRTEYKPPSPSPLNSPSRLPTGAAAGWPGGRGRGSGSS----RGQWWRGALVGAVSALIVCGAGRVLLGGAGGGXXXXXXXXXXXGDTRGLAEEETRNHGERCPVFNAVTGETKVPDDSPPKKIETLIKPGKAYPIKSQDWATRVYAAKSARSQASKGAGPDEIGRAALSKRLAARQLQGPREESGGTAAVLTLLVADAKKPQPFLSALGGRQSWDPEHRATAAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSGGADERRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVVARLSRAAAATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGG 375
BLAST of mRNA_E_fasciculatus_S2_contig9912.17906.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE) HSP 1 Score: 505 bits (1301), Expect = 1.570e-168 Identity = 291/374 (77.81%), Postives = 306/374 (81.82%), Query Frame = 1
Query: 1 MLRPVRNDYKPPSPSPLNSPSRGPAAXXXXXXXXXXXXXXXXXXXXKGQWWRGALVGAVSALIACGAGRLLLGXXXXXXXXXX--DTQDLAEEEIRNHDGRCPVFNAVTGETKVPDDSK-KKIETLIKPGKAYPIQSQDWATRVYAAKSARSQASKGAAPEEIGRAALSKRLAARQQQGPREESGGTAAVLTLLVADAKKPQPFLSALGRRQSWGPEYRATTAAAGAGEAEWAWEEVFVCEEDETALDGILGSLGEGEAWREALERGMVKLVPCSSGGADERRAGELSLACAAGDASVAEFVWLPGPGVAEALGMADAKLLTPSGRGAEVAAELSRVATATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVEAGG 1113
MLRPVR +YKPPSPSPLNSPSR PA KGQWWRGALVGAVSALIACGAGR+LLGXXXXXXXXXX DT LAEEE R+H RCPVFNAVTGETKVPDDS KKIE LIKPGK YPIQS+DWA+RVYAAKSARSQASKGA P+E GPREESGGTAAVLTLLVAD K+PQPFLSALG RQ+W PE+R TTAAAGAGEAEWAWEEVFVCEEDE ALDGILGS GE EAWREALERG VKLVPCS GGADERRAGELSLACAAGDASV+EFVWLPGP VAEALG ADAK TPSGRGAEV +EL R A+ATGV GVFGVRGWQRTQDAPRPKRQRRGLL+++GG
Sbjct: 1 MLRPVRTEYKPPSPSPLNSPSRLPAGAAAGWPGGRGRGSGSS----KGQWWRGALVGAVSALIACGAGRVLLGXXXXXXXXXXXDDTWGLAEEETRSHGERCPVFNAVTGETKVPDDSPPKKIEKLIKPGKTYPIQSRDWASRVYAAKSARSQASKGAGPDE----------------GPREESGGTAAVLTLLVADTKQPQPFLSALGGRQNWDPEHRTTTAAAGAGEAEWAWEEVFVCEEDEGALDGILGSRGEREAWREALERGAVKLVPCSFGGADERRAGELSLACAAGDASVSEFVWLPGPRVAEALGRADAKRSTPSGRGAEVVSELYRAASATGVGGVFGVRGWQRTQDAPRPKRQRRGLLIQSGG 354
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1113 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 1113 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842633.823681-CDS-E_fasciculatus_S2_contig9912:448..563 | 1696842633.823681-CDS-E_fasciculatus_S2_contig9912:448..563 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9912 449..563 - |
| 1696842633.833941-CDS-E_fasciculatus_S2_contig9912:1667..1861 | 1696842633.833941-CDS-E_fasciculatus_S2_contig9912:1667..1861 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9912 1668..1861 - |
| 1696842633.8425806-CDS-E_fasciculatus_S2_contig9912:2116..2443 | 1696842633.8425806-CDS-E_fasciculatus_S2_contig9912:2116..2443 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9912 2117..2443 - |
| 1696842633.856559-CDS-E_fasciculatus_S2_contig9912:3095..3209 | 1696842633.856559-CDS-E_fasciculatus_S2_contig9912:3095..3209 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9912 3096..3209 - |
| 1696842633.8652053-CDS-E_fasciculatus_S2_contig9912:4029..4089 | 1696842633.8652053-CDS-E_fasciculatus_S2_contig9912:4029..4089 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9912 4030..4089 - |
| 1696842633.8758929-CDS-E_fasciculatus_S2_contig9912:4834..5137 | 1696842633.8758929-CDS-E_fasciculatus_S2_contig9912:4834..5137 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9912 4835..5137 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9912.17906.1 >prot_E_fasciculatus_S2_contig9912.17906.1 ID=prot_E_fasciculatus_S2_contig9912.17906.1|Name=mRNA_E_fasciculatus_S2_contig9912.17906.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=371bp
MLRPVRNDYKPPSPSPLNSPSRGPAAALGAGGWGRGRGSSSSSSSSKGQW
WRGALVGAVSALIACGAGRLLLGGGGSGGGGGGDTQDLAEEEIRNHDGRC
PVFNAVTGETKVPDDSKKKIETLIKPGKAYPIQSQDWATRVYAAKSARSQ
ASKGAAPEEIGRAALSKRLAARQQQGPREESGGTAAVLTLLVADAKKPQP
FLSALGRRQSWGPEYRATTAAAGAGEAEWAWEEVFVCEEDETALDGILGS
LGEGEAWREALERGMVKLVPCSSGGADERRAGELSLACAAGDASVAEFVW
LPGPGVAEALGMADAKLLTPSGRGAEVAAELSRVATATGVEGVFGVRGWQ
RTQDAPRPKRQRRGLLVEAGG back to topmRNA from alignment at E_fasciculatus_S2_contig9912:449..5137- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9912.17906.1 ID=mRNA_E_fasciculatus_S2_contig9912.17906.1|Name=mRNA_E_fasciculatus_S2_contig9912.17906.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4689bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9912:449..5137- (Ectocarpus fasciculatus EfasUO2)
ATGTTGCGCCCCGTCCGAAATGACTACAAGCCGCCGTCGCCGTCGCCGTT
GAATTCTCCTTCGCGCGGCCCCGCCGCCGCCCTCGGCGCTGGCGGGTGGG
GCAGGGGGAGGGGGAGCAGCAGCAGCAGCAGCAGCAGCAAGGGGCAATGG
TGGCGCGGAGCTTTGGTCGGGGCGGTCTCTGCCCTGATCGCGTGCGGCGC
GGGGAGGTTGCTGCTGGGCGGCGGCGGGAGCGGTGGCGGCGGCGGCGGCG
ACACACAGGATCTTGCTGAGGAGGAGATCAGGAACCATGACGGGCGCTGT
CCGGTGAGGTTCGCTTTTTTCTGTGTTCTGTGTTCTTTTGGTGATGTCTG
ACTGCTGTTGTAGGGTGTGAAGGCTTGTTTTGGCCGTGTGTGTTTATGCT
ATCCGCCGAGGCAGGGCCAACGAAACCCACAGGGTCCGGAAAAATAGAAG
TTTTTTGTTTTTGTTTTTTTTGGCGTTTGGCCGCTCGACGCGAAGCCCTC
TATGGCGCGGCCGTGTCGCCCGTGGTGTCAGACACGTTAGGTGGCGGACT
CCGTCGCCACTTTTACGGCGTTTTCGCAGAGGCAAGAGGAAGACCCGACG
AAGCGAGTAGTCATGCAGCATCGCCCGTGACCAACTCTTGATTGAAGCTT
TCCGCGTTGACTCTTGAGGATTTCTTCCGCGAACCCTAATCGTACACGTC
GGGGGTAGTTTTGTCGGCAAAGAAAACGCAGCGTGGGCCATGGGGGCCAC
GGGAGGCGTTCGGCAAGTCAATGGTTGCATGGCCGCTGAGCTGATGTGTT
TTGTTGCTACAGATGGGAGGGGCGTAAGTGGGCCCGTCACCGGCCCGCCC
ACCCCCCTCCCTCGTCTTGCCAGGAATTACATTATACTCGGTTCGGGTTT
TCCATGGGTTTTCCTTGGGTTTTCTTTCCTGGCGGCACTACTGCACGTGC
ATACTTGTGCTGTACATGGGTTTTCCATGGGTTCTCCATGGGTTTTCCGT
AAGTGTTTTTTCCTGCCGGCATCACTATCCATACTCGTGCTGCATCAGGT
TTTCAACGCTGTTACGGGAGAGACGAAGGTTCCGGATGATTCGAAGAAGA
AGATAGAGGTGGGTACCTTTTTCACCCACCGCACTCACTGCTGCTGTTTG
ACTTGTAGAAAGATTTGGTAACCCTCTTTGGGAGTAGTTGGCTTGTGGCT
TGTGGCCACGGAAGGCATCCACGTCAGTTGGACCAGTACGCGTATGAAAA
GGTACTGAGCGGAGACCGGAACGGTTTTGAATGCGAAAACAACAACAGCA
ACAACAACAACAACAACAACAACAACAACATGAATGGTCACGTAACTGTA
TCTGTTGTATGAACCAATCCAGCTACATTATCCTTCTATAGGCCGTTCCC
CAAACCATCCCCCACGCCCGGTGTTTCCACTACCGTAGTACCACCAATGC
CCCTGCCAAGTCAATCTGGAAGCTGCTGAAAAGCGCGGCCTCTCATCTGG
ACACAGCGGTATTCCAAACGCGTGGTCGAGCAAAGAAGTCACATCCTCCT
GCGTCTATTGTCCGAGCTTCCATCCGTGGAGACATCTCGGGTTCTGCAAG
TGACGAGCATTGCAGCTTGTTTTCGGGGAAAACTATCTCCATCCATGTAT
CTGGGTCGGCCGGTGCATGTTCATGGCTGCAAGTATTTCGTGGACCCAAC
ACCGCTGATAAGAATCCTGTTTCTTCGCTCTGCCCCCCCCCCAGGGCTTG
CGTTTGTTTCATCCAAGTCCAGCAAGTCCAGACCAAAGTATCTCCCATTG
ACCCTGCCCCCAATACCCCACAAAGGTGTCATACCCACCACCACCACCAT
CACCACCCCACCGCACCGCTTCGCCCTTGTGGCCGTCCACCCCCTCTCGC
CGCTTAACCCTTGTGCCCGTCCCATCAGACGCTGATCAAGCCCGGGAAGG
CTTATCCCATTCAGTCTCAGGACTGGGCCACACGCGTGTACGCGGCTAAG
TCGGCGAGGAGCCAGGCTTCCAAGGGGGCGGCACCGGAAGAGGTGTGGTT
TGCATTGATTCGTGCAGCACTCGGGCACTACCCTGCGGGGAAATTTTTTT
GTGTTCTCTTTCTCTATATTTCGTGTATCTCGCTTTGATTAGTCGGGCCT
GTGATGCTGCGCACCCGATGGTCCCCGTTCAACAGTGTCGCCGCTTGTTT
AGGATAAATGCGTACCTCGATCAGGAACGTAATTTACCTCGTACATGGAG
TACCTGGTCTGTTGAAAAAATGCTGGAAATATCGGCGACGAAGTTCCTGG
GGGGGAGGTTAGGCGGTAGTGTTGAGGGCATTGATTGGCCCGACCTGCAA
TAGTGGAGACGAAAAAACGCGGGGTGATGATGGTGGTGTCATGGGCCGAC
TTAAATGGAGTTGAACCAAGCGCGAGTCACCGGCGCTGTGGCAGGATAGG
GCAGACCCAAACGACTACGGATCGCCTCACCTTTGAGATTTTTGTCGCCA
CGATACGTTAAGGTCACACTACAATATTGGAGGGGGAGGACGAACCAGCT
ACCTTCGTGTGAAAACTGCGGCAGCAACAAGCGTCAAATATTAGCGGTGT
CTCAATCTGGTTGTCAACGTCGATAGGCATGTAGGACACCAAGGCCAGTC
GACAAAGGCAAACGAACACCCTCCCCCCCCCCCCCCCCCGTCAGATCGGT
CGGGCCGCGCTCTCCAAGCGGTTGGCTGCGCGGCAGCAACAGGGGCCACG
GGAAGAAAGCGGCGGAACTGCTGCCGTTTTGACTCTCCTGGTGGCCGACG
CCAAGAAGCCGCAGCCGTTCCTGTCTGCTCTCGGGCGAAGACAGAGCTGG
GGCCCTGAGTATCGCGCGACAACGGCGGCGGCAGGGGCGGGAGAGGCTGA
GTGGGCTTGGGAAGAGGTGTTTGTCTGCGAGGAGGACGAGACAGCCCTGG
ATGGGATCTTGGGCTCGCTGGGGGAGGGCGAGGCGTGGCGAGAGGCGCTC
GAACGAGGGATGGTGAAGCTGGTGCGTTTTTGCGACTGGCCTGTCGGAGA
GCTGGGAGTTGTCTTTCTCTCTTCCTTCCCTGCCTGCAAGTATTGTTTCC
CCTCGGCTCTTGCTCCGCGCCGGCGCATTAGAGGTATCGCGAGAGGTTAT
GGCACGAGACAGCTAGATAGGCCTACAAATGAGCACGCCCCACTGCCACC
CTGCTGACAGTTTGCAAGAAACCGAAGTAACGTCCAGCGCTGTTTCACAT
AAACGATACACACACACACACCGCAGGTGCCCTGTAGCTCCGGCGGGGCG
GACGAGCGGCGAGCCGGCGAGCTGTCCCTCGCGTGCGCCGCCGGCGACGC
CTCCGTGGCGGAGTTCGTGTGGCTGCCGGGGCCGGGCGTGGCGGAGGCGC
TGGGGATGGCGGACGCGAAGCTGTTGACCCCATCGGGCAGGGGTGCGGAG
GTCGCAGCGGAGCTCTCCAGGTGCGAGGTAGATGGTTGGGTGCAGTATTG
GTAGTTCTTACTTTACGGGATTGTTTTTGACGTTCTTCAAGTGTGCTTCC
AAGGATTTGTTCGAGCACTCTCAAGGTAGGGGAGTAGTTCGTGGGTGACA
CTACTATGGAATATGTTATTGAATGTTCTCCAAGCGTGAAGTCAAGCATT
CTTCAAGAGCTGTCGGCGTACGAAGTAGAGAAATATTGCATGGGTGACAC
TACTATGGAACTGTTTTTTCTTTTACTTTTTTCAAGCGTGCTTAGAGCGT
GATTTCAATATTTTTCTTGGAGAATTCTCGAGGAACGGAGAGGCTAGCGT
CGTTGTAGCTTTAGAAACAGCGTTGGATTGGATAGGTGTCTGGCGTGATG
GCCTCTTGTTTTGCCCTGCTACACACCCGCACGCACAACCCTCCTCCCCG
ATACCAGTTATATGTCTTTAGTGCTTGCGTCGTACGAACGGACAGCACCC
GATGGCATCGGAGATGCCGTTACCACTGCTTGATGCGTATTTCGGATGCC
CCCCCATCTGTCGGGGGATGGGTTAGCGCTATAATACGTTCTTGACAGAT
GGATGCGTACCATGATCGTTAGTTTTTGCAGGTCAGACCAACGTCAAAGA
CACCTAACCCTAGCCCTAACCCTAAAGACCCTATGGTGGCGGCCAATACG
AACAAGAATCATAGGGGGGTAAATTGAGGAAGGGTTCGCGTTCCAAACAC
GACAATCAACAGTAAATAGGGGCGCCCGAAAAATAAAGAGAGGTGTTGGC
AGTGTCTCGACTCGGAGAACAGACGGACGGTGTTACGTCTCTGAAAGTGG
GGCGTGGTTCATAGAGTCAAGCGAATCAAGGCGAGCAAAAACCAAGTCCG
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCGGCTTTTTTTTTTTTGTTT
TTGTCTGCGGGGAATCAAGGCGAGCAAAAACCAAGTCCGACCCCCCCCAC
CCACCCACCCACCCACCCACCCACCCCGGCGCCATCACCATTTGCGTCCC
TCCCGTCGATGGGTTTCTTTGCAGGGTTGCTACTGCGACGGGAGTGGAAG
GCGTTTTCGGTGTGCGGGGATGGCAGCGCACGCAGGACGCGCCCCGACCG
AAGCGACAACGCCGCGGTCTGCTGGTAGAGGCAGGTGGG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9912:449..5137- >mRNA_E_fasciculatus_S2_contig9912.17906.1 ID=mRNA_E_fasciculatus_S2_contig9912.17906.1|Name=mRNA_E_fasciculatus_S2_contig9912.17906.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1113bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9912:449..5137- (Ectocarpus fasciculatus EfasUO2)
ATGTTGCGCCCCGTCCGAAATGACTACAAGCCGCCGTCGCCGTCGCCGTT
GAATTCTCCTTCGCGCGGCCCCGCCGCCGCCCTCGGCGCTGGCGGGTGGG
GCAGGGGGAGGGGGAGCAGCAGCAGCAGCAGCAGCAGCAAGGGGCAATGG
TGGCGCGGAGCTTTGGTCGGGGCGGTCTCTGCCCTGATCGCGTGCGGCGC
GGGGAGGTTGCTGCTGGGCGGCGGCGGGAGCGGTGGCGGCGGCGGCGGCG
ACACACAGGATCTTGCTGAGGAGGAGATCAGGAACCATGACGGGCGCTGT
CCGGTTTTCAACGCTGTTACGGGAGAGACGAAGGTTCCGGATGATTCGAA
GAAGAAGATAGAGACGCTGATCAAGCCCGGGAAGGCTTATCCCATTCAGT
CTCAGGACTGGGCCACACGCGTGTACGCGGCTAAGTCGGCGAGGAGCCAG
GCTTCCAAGGGGGCGGCACCGGAAGAGATCGGTCGGGCCGCGCTCTCCAA
GCGGTTGGCTGCGCGGCAGCAACAGGGGCCACGGGAAGAAAGCGGCGGAA
CTGCTGCCGTTTTGACTCTCCTGGTGGCCGACGCCAAGAAGCCGCAGCCG
TTCCTGTCTGCTCTCGGGCGAAGACAGAGCTGGGGCCCTGAGTATCGCGC
GACAACGGCGGCGGCAGGGGCGGGAGAGGCTGAGTGGGCTTGGGAAGAGG
TGTTTGTCTGCGAGGAGGACGAGACAGCCCTGGATGGGATCTTGGGCTCG
CTGGGGGAGGGCGAGGCGTGGCGAGAGGCGCTCGAACGAGGGATGGTGAA
GCTGGTGCCCTGTAGCTCCGGCGGGGCGGACGAGCGGCGAGCCGGCGAGC
TGTCCCTCGCGTGCGCCGCCGGCGACGCCTCCGTGGCGGAGTTCGTGTGG
CTGCCGGGGCCGGGCGTGGCGGAGGCGCTGGGGATGGCGGACGCGAAGCT
GTTGACCCCATCGGGCAGGGGTGCGGAGGTCGCAGCGGAGCTCTCCAGGG
TTGCTACTGCGACGGGAGTGGAAGGCGTTTTCGGTGTGCGGGGATGGCAG
CGCACGCAGGACGCGCCCCGACCGAAGCGACAACGCCGCGGTCTGCTGGT
AGAGGCAGGTGGG back to top
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