mRNA_E_fasciculatus_S2_contig9898.17891.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9898.17891.1
Unique NamemRNA_E_fasciculatus_S2_contig9898.17891.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9898.17891.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 489 bits (1259), Expect = 3.200e-161
Identity = 251/262 (95.80%), Postives = 255/262 (97.33%), Query Frame = 1 
Query:  103 RPSNQTETRRASGDSGGLSKRRGAPPMGPIPSMTDAALKDLIETSLNEEKTARAPLLRTSTSPSPAPLKVVLMGRVLIPSSKGTSIPTGSNGRDKPRVSRSRVHSVCLVMEDRTSSAGSYWSGSVRDITVHPGPEGREVAEKTVVTNRGWNIKGLSGVEKRDGSRETEGAAFTLTFETGRSSSPTAVGQESSYTCEGVNAAACDEILWGLLTLNRAMQEGDELEPVNVSLKELDATAVYHGLATKHPLVPKLARQMRADERS 888
            RPS Q ETRRASGDSGGLSKRRGAPPMGP+PSMTDAALKDLIETSLNEEKTARAPLLRTSTSP+P PLKVVLMGRVLIPSSKG SIPTGSNGRDKPR SRSRVHSVC+VMEDRTSSAGSYWSGSVRDITVHPGPEGRE AEKTVVTNRGWNIKGLSGVEKRDG+RETEGAAFTLTFETGRSSSPTAVGQESSYT EGVNAAACDEILWGLLTLNRAMQEGDELEPVNVSLKELDATAVYHGLATKHPLVPKLARQMRADERS
Sbjct:  109 RPSTQVETRRASGDSGGLSKRRGAPPMGPVPSMTDAALKDLIETSLNEEKTARAPLLRTSTSPNPTPLKVVLMGRVLIPSSKGASIPTGSNGRDKPRASRSRVHSVCIVMEDRTSSAGSYWSGSVRDITVHPGPEGREFAEKTVVTNRGWNIKGLSGVEKRDGTRETEGAAFTLTFETGRSSSPTAVGQESSYTWEGVNAAACDEILWGLLTLNRAMQEGDELEPVNVSLKELDATAVYHGLATKHPLVPKLARQMRADERS 370
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9898.17891.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.200e-16195.80protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9898contigE_fasciculatus_S2_contig9898:660..5263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score495.7
Seed ortholog evalue1.5e-137
Seed eggNOG ortholog2880.D7G3Y9
Model size892
KEGG koko:K18412,ko:K19983
Hectar predicted targeting categoryother localisation
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
Exons7
EggNOG free text desc.exocyst localization
EggNOG OGsKOG2148@1,KOG2148@2759
Cds size888
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9898.17891.1prot_E_fasciculatus_S2_contig9898.17891.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9898 660..5261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842632.1867602-CDS-E_fasciculatus_S2_contig9898:659..9051696842632.1867602-CDS-E_fasciculatus_S2_contig9898:659..905Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 660..905 +
1696842632.2047477-CDS-E_fasciculatus_S2_contig9898:2144..22061696842632.2047477-CDS-E_fasciculatus_S2_contig9898:2144..2206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 2145..2206 +
1696842632.2206147-CDS-E_fasciculatus_S2_contig9898:2544..26651696842632.2206147-CDS-E_fasciculatus_S2_contig9898:2544..2665Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 2545..2665 +
1696842632.2317927-CDS-E_fasciculatus_S2_contig9898:2999..31021696842632.2317927-CDS-E_fasciculatus_S2_contig9898:2999..3102Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 3000..3102 +
1696842632.2413924-CDS-E_fasciculatus_S2_contig9898:3879..39911696842632.2413924-CDS-E_fasciculatus_S2_contig9898:3879..3991Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 3880..3991 +
1696842632.2509224-CDS-E_fasciculatus_S2_contig9898:4314..44651696842632.2509224-CDS-E_fasciculatus_S2_contig9898:4314..4465Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 4315..4465 +
1696842632.2606876-CDS-E_fasciculatus_S2_contig9898:5168..52611696842632.2606876-CDS-E_fasciculatus_S2_contig9898:5168..5261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9898 5169..5261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9898.17891.1

>prot_E_fasciculatus_S2_contig9898.17891.1 ID=prot_E_fasciculatus_S2_contig9898.17891.1|Name=mRNA_E_fasciculatus_S2_contig9898.17891.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=296bp
GKSRGPSGGSRRGSAESTSDQRQRQGGGQRRRSSRPSNQTETRRASGDSG
GLSKRRGAPPMGPIPSMTDAALKDLIETSLNEEKTARAPLLRTSTSPSPA
PLKVVLMGRVLIPSSKGTSIPTGSNGRDKPRVSRSRVHSVCLVMEDRTSS
AGSYWSGSVRDITVHPGPEGREVAEKTVVTNRGWNIKGLSGVEKRDGSRE
TEGAAFTLTFETGRSSSPTAVGQESSYTCEGVNAAACDEILWGLLTLNRA
MQEGDELEPVNVSLKELDATAVYHGLATKHPLVPKLARQMRADERS
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mRNA from alignment at E_fasciculatus_S2_contig9898:660..5263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9898.17891.1 ID=mRNA_E_fasciculatus_S2_contig9898.17891.1|Name=mRNA_E_fasciculatus_S2_contig9898.17891.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4604bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9898:660..5263+ (Ectocarpus fasciculatus EfasUO2)
GGCAAGAGCAGGGGGCCCTCTGGCGGCAGTCGTAGGGGCTCCGCAGAATC
CACTTCGGACCAACGGCAGCGGCAAGGCGGGGGGCAGCGGCGTCGGTCGA
GCCGGCCTTCCAACCAGACGGAAACCCGACGGGCTAGCGGCGACTCTGGT
GGCCTGTCGAAGAGACGCGGAGCCCCCCCGATGGGGCCGATCCCGTCCAT
GACCGACGCCGCCCTCAAGGACCTGATCGAAACCTCGCTCAACGAGGTGC
GCTATGCTATGCCCTTCTCCGTTGTGTGCGTTTGGTCTTATGTTTTTTTG
CGTGTTTTGTCTGTTGGTCCAGCAGCAGTGGTAGTCGCTGAATACGGCCG
CGTAGTACCAAGGATGTGGTCGGCCTTTTGTACCGGTCACCAGGTACTTA
ATATTCAGAGTAATGAAACAAGGTGATTGTTGTTCGATCAGTATCACCGG
CCTTGCACCGGGCGACCAGACATATTTGTGCGGTCTCACTACTGTGGTTC
AGCTCCGCTCGTTGGTGCCATATTCCATTTTCACGACAAACCGTTCCTTG
TTGTTGTTGCTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTCGTCGGTTTC
ACACTGTTAAGAATTGTTTTCCGGTCTGTCTCTGCTCAGTGCTGTACCTT
CTGACACATCCGTACTGGTCCAACTGACGCGGAGCCCTTCCGTGGTCACA
AGCCAACTACCCTAAAAGGGGGTACACCTTCTAATGTCCGTACTGGCCCA
ACTGACGCGGACTCCTTTCATGGTCATAACCCAACTACCCTAAAAGGGGG
TACACCTTCTAATGTCCGTGCTGGTCCAACTGACGCGGACTCCTCCCGTG
GTCACAGACCAACAACATGTACCTGAAAACAGAATGGAGTGGTACATACA
CGCTACGATAATGCAAAAGAGAAACGTACAACTGTTTTCATTTGTCGCGC
CGTTTTTCTCAAACGCTATATGAATTTCCTCATGCAAAGCTAGCTCTCAC
TCCAATGCATGTCGCGCTTTCGAAAGCTGTCTGTGTGTACATGGAGGCGT
GTTTCGTCAAAAACAATCTGGATTTCAAGGTTTGTTCTGTTGTGTTGGTT
CGGCACTTTACGTTGTGATGATGTAGACAGATACACACGAGTTTCGGTGA
GGTTTTTTTTTTTACCCCTGACTTTGGTTGTTTTTGGGTGTACGGCATGC
ACACTCTGCAACCGCTGGCGGGCCTCGATTGCCTCCGATCGTCTTCGACA
CGTTCGCTGGCATTGGCGTGGTGCTGATGAGATCCCCCCAATCCGAATGC
CCGAACCACCTTTGGCAAAATAGTTTGGCTGTAGGTGATCGGTGCTCTGT
GGGAACAATGCTCCGTCCTGTCAAGGACGCATCCTCAATGTTCGTAACAT
TTCAGGCATGCAAAATGCGTACACCCCCCTCCCCAAGTTCGCACTCACGG
CACCCCTCTTGTGCGTGTTATTTCTTACGTCGCAGGAGAAGACAGCGAGA
GCACCGCTCCTCAGGACATCCACCTCTCCCAGCCCCGCGCCTCTCAAGTA
AGTGCACCCCCGCACCTCTCAAGTAAGTGCACCGCCCATGTCTCCCCCCC
CTTCCGGCCTGTGTACCAGTAGTGCTGCGTTGCGTTCTTGGTTGAGGCAA
GGTGGGTAGGGGCCCACATATTCCAAAGAGGGTGAAAGAGCTTGGGGGTG
TCGACTCATCAGTGGCTTGAATCAAGCCACCTTGGACTACTGGTGCGTTC
TTCCCGAGCGGAAAACATCTAAGCAAACCGGCAGTGAAAACAACACTTTG
GACGCCATAGGTTCGCGCCCAACCGCTCATCAAAGCGAGCCACATCACAC
GGAATCCTACTCGCTACGCTCTTGTGCTTTTGCAGGGTGGTGCTAATGGG
ACGTGTGTTGATTCCCTCCTCCAAGGGGACGTCCATCCCGACGGGCTCCA
ACGGACGGGATAAGCCCAGAGTCAGTCGATCAAGGGTGCACTCCGTCTGC
CTGGTGGTAAGTGCCAAGACACAGACTGCCGTTTCGCTCGCAGCCGTTTG
TGCTAGTCAGCGGCGCGTACACACACGGACGACCGGCGCTGCATCCGGGG
TGGTCCAACTGACTCGGGCGAGCTCCGTGGTGTTTGTGAAAAAAAAATGT
TCTGTTACGTATGTCGATGTATAGACTGTAATGGAATCAGATGGAACAGC
ATCAGCTCCGCGGGTCCTGTATTGGTCAGTTTATATTTATATTTATATTT
TCTTATGCGTCGACCGCACTAATCGGCTGACCAATGCTCATGTGTATCTT
TCATTTTCTGTGTCTTTGTCGATATACATGATGTAATCAGATGGAAGACA
GGACCAGCTCGGCGGGATCCTATTGGTCAGGGTCCGTGAGGGATATCACC
GTGCACCCGGGCCCAGAAGGCCGCGAGGTCGCGGAGAAGACAGGTCGGGT
GGCCTGACCTTACCTCACCCCTTGTCCTGAGGGCTGACACCTGCTTGTGG
CACTTCAGACCCAAAACCCAGGCTACAGCCACCAACTAAAAGAACAGCGT
GTGCGTTTTTTGGGGGCATTCGATTTGCGAGCATACGTACGTCTGAGCTA
GTGGGGCAGTTATTGCTTCCTGTTCTACTGAGAGGGGCGTTGAAAACGGA
AAAGAAGAGAATGTATCCATCGAATCATCCGCAATCGGCGGAGTTATGGT
ATTGATTCCGACGACCGACTGGGTGTTGCTTATTGACAGGTTTCTATTGA
CCCGCGTTTGTTTGCGGAGAGATTTGAATAAACAACCAAGCGTCCCGCTG
ACTTTCTCATCCACACCAGCTCTGGCGCGCAGTTTGAGTGGAGATGGCCT
TGGAAAATCACTCTTTCTTTTTTCCAAAAGGCACGTTGTTTGTTTTATCT
CCTGCCAGCAGTTCTTCTCTACGCCAACATGTGCTGTTGCCCCGATCCAG
TCGTCACCACGTCCTCCGCTTGACTTAGGAAATATTCAAAAGTCACGCTT
GTGTTTTCGTAGTCTCGTGACGGCAGTGCTCCTGTATGTCGACGTGTGCT
TTGACGCTATTGCGGTTGCCACCACTCCGCGGCAGCTCCATGGCGCATCT
GTCTTGCCAGTCGCGATTGTTGTCAAGTCAAACTTGTTTGTCTGTTCCTC
GTGAGTAGTGCTTCTGCCTGGCGACGTGACCTTGACCCTGTTGTCCGTGT
TGCTCTTGCTGTTGTCCCAGTCGTGACGAACCGTGGGTGGAATATTAAGG
GGCTTTCTGGTGTCGAGAAGAGAGACGGGAGCAGGGAGACGGAGGGAGCG
GCGTTCACCCTTACCTTCGAGACGGGCAGAAGGTATGACGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGCGTTCTTGTTG
TTGTTGTTGTCGGTGGTGAGGATGATGGCGGTGACGCAATGGCAACAAAG
TGGGGAGAGAATTGTCGAATTGAATCAAGCCCCTCAAGAACACTGTGCCT
TGGTCAGCTAGTTCGTCCCATTCGCTCTAGTTTTTTGTAGCTCAAATGCA
GTGAAGCAAATGTTGTCGTAACCGTTTTAATCCCCTTCGTCCCGTGCGCC
GATTTTTTTGTTTTCCATTTGCAACGACACATCATTTATAAAAAAATAAA
AACAGCTCCTCGCCGACGGCGGTCGGTCAAGAGTCCAGCTACACCTGCGA
AGGCGTCAACGCGGCGGCGTGCGACGAGATCCTTTGGGGTCTTCTCACGC
TCAACAGGGCAATGCAGGAGGGTGACGAGCTAGAGCCCGTCAACGTCAGC
CTCAAGGTGATGGTGTTGCTTTCGTGTGGTGCTACGGGGAAAAGACCGCT
TCTAAGAGAGACGTTGTGGAGTATAGGGTTGTTATTTTGTCGTTGTGGTC
TACGCGTACCATGGGTATACCGCAGTGTAGGAAAGGGGAGCTCGCGGAGT
GTATGGATACCGTGAGGGAAGGAGGTGTGTATGAACCCCTTTTTCGTGGC
ACGACGATTTCGTCCGCCGTGGCCCCCCATCCGAAGCTCTCTATTCAACA
AGGAGCAAGGCCTTTCGCGCCGCAGAGACAGGGTATTGGAGCGACCGATA
AGAAGTGGGACGATTACGATCACACACGCCATCATACCGCACCACGGAAA
GAGTGTTGTGGCACATATACCGGCGGCGCCGCTATGGAATACGTGGACCA
AACAACGGTTGCCAAGGAGAAGAGGGCAATGACAAGAAACAAAACCAGTG
CCTTGGCTTACACAAACTCAAAAATATGCCCAGTTTCCGGCCTGTTTCCC
TCCACTCACAGAAAAGACTTGAGGACATACACCCCTTTCGACTGCTGCGG
TTTTATCTCGAACGGCTACTCGTTCTGTATGTTTTATGGATTTTTTCTCA
CAACAGCAGTGGCCACGAAAACATACGCTGGTATTCGGCACCAAAACGCC
AATCTTTCATGTCTCGTTCAACACACCTCACGCACGGCGCCTCCTACCCC
CCGCAACAGGAGTTAGACGCGACGGCAGTGTACCACGGCTTGGCCACGAA
GCACCCGCTCGTCCCAAAGCTGGCCAGGCAAATGCGAGCGGACGAGCGCA
GTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9898:660..5263+

>mRNA_E_fasciculatus_S2_contig9898.17891.1 ID=mRNA_E_fasciculatus_S2_contig9898.17891.1|Name=mRNA_E_fasciculatus_S2_contig9898.17891.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=888bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9898:660..5263+ (Ectocarpus fasciculatus EfasUO2)
GGCAAGAGCAGGGGGCCCTCTGGCGGCAGTCGTAGGGGCTCCGCAGAATC
CACTTCGGACCAACGGCAGCGGCAAGGCGGGGGGCAGCGGCGTCGGTCGA
GCCGGCCTTCCAACCAGACGGAAACCCGACGGGCTAGCGGCGACTCTGGT
GGCCTGTCGAAGAGACGCGGAGCCCCCCCGATGGGGCCGATCCCGTCCAT
GACCGACGCCGCCCTCAAGGACCTGATCGAAACCTCGCTCAACGAGGAGA
AGACAGCGAGAGCACCGCTCCTCAGGACATCCACCTCTCCCAGCCCCGCG
CCTCTCAAGGTGGTGCTAATGGGACGTGTGTTGATTCCCTCCTCCAAGGG
GACGTCCATCCCGACGGGCTCCAACGGACGGGATAAGCCCAGAGTCAGTC
GATCAAGGGTGCACTCCGTCTGCCTGGTGATGGAAGACAGGACCAGCTCG
GCGGGATCCTATTGGTCAGGGTCCGTGAGGGATATCACCGTGCACCCGGG
CCCAGAAGGCCGCGAGGTCGCGGAGAAGACAGTCGTGACGAACCGTGGGT
GGAATATTAAGGGGCTTTCTGGTGTCGAGAAGAGAGACGGGAGCAGGGAG
ACGGAGGGAGCGGCGTTCACCCTTACCTTCGAGACGGGCAGAAGCTCCTC
GCCGACGGCGGTCGGTCAAGAGTCCAGCTACACCTGCGAAGGCGTCAACG
CGGCGGCGTGCGACGAGATCCTTTGGGGTCTTCTCACGCTCAACAGGGCA
ATGCAGGAGGGTGACGAGCTAGAGCCCGTCAACGTCAGCCTCAAGGAGTT
AGACGCGACGGCAGTGTACCACGGCTTGGCCACGAAGCACCCGCTCGTCC
CAAAGCTGGCCAGGCAAATGCGAGCGGACGAGCGCAGT
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