mRNA_E_fasciculatus_S2_contig9879.17877.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 3.180e-8 Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2 Query: 11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
GC+ PSYGKD SKKAEFCSQHA++GM+NV KRCG
Sbjct: 252 GCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRCG 287
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 9.590e-8 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 2 Query: 11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
GCT PSYG DGSKKAEFCS+H++ GM NV +KRCG
Sbjct: 35 GCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCG 70
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 1.380e-7 Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 2 Query: 11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRC 115
GCTK PSYG GSKK EFC+QHA+KGM+N+R +RC
Sbjct: 113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R1_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 1.440e-7 Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 2 Query: 5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMI 94
HPGC K+PS+G DGSKKAEFCSQHAQ+GM+
Sbjct: 358 HPGCIKIPSFGNDGSKKAEFCSQHAQQGMV 387
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ5_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 2.120e-7 Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 Query: 5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
HPG TK PS GKDGSKKAE CSQH Q+GMIN+ K+ G
Sbjct: 86 HPGFTKEPSCGKDGSKKAEVCSQHVQRGMINLVSKKWG 123
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU4_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 2.300e-7 Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 2 Query: 11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
GC++ PSYGKD +KKAEFC+QH Q+GM+NV K CG
Sbjct: 25 GCSRRPSYGKDNTKKAEFCAQHRQQGMVNVAHKMCG 60
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 4.240e-7 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 2 Query: 5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMI 94
HPGCTK PSYG DGSKKAE C+QHA +GM+
Sbjct: 11 HPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV0_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 4.930e-7 Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 2 Query: 5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINV 100
HPGC K PS+G DGS KAEFCSQHA KGM+NV
Sbjct: 39 HPGCIKRPSFGNDGSTKAEFCSQHAWKGMVNV 70
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 7.010e-7 Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 2 Query: 5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRC 115
H CTK P+YG GSKK EFCSQHA+ GM+NV KRC
Sbjct: 6 HANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 8.190e-7 Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 2 Query: 5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRC 115
H CTK P+YG GSKK EFCSQHA+ GM+NV KRC
Sbjct: 66 HENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9879.17877.1 >prot_E_fasciculatus_S2_contig9879.17877.1 ID=prot_E_fasciculatus_S2_contig9879.17877.1|Name=mRNA_E_fasciculatus_S2_contig9879.17877.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=52bp MINVRRKRCGHPGCTKRPSYGNPGSKKAEFCTQHAQHDMVNVRREFYQESback to top mRNA from alignment at E_fasciculatus_S2_contig9879:5051..5693+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9879.17877.1 ID=mRNA_E_fasciculatus_S2_contig9879.17877.1|Name=mRNA_E_fasciculatus_S2_contig9879.17877.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=643bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9879:5051..5693+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9879:5051..5693+ >mRNA_E_fasciculatus_S2_contig9879.17877.1 ID=mRNA_E_fasciculatus_S2_contig9879.17877.1|Name=mRNA_E_fasciculatus_S2_contig9879.17877.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=156bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9879:5051..5693+ (Ectocarpus fasciculatus EfasUO2)back to top |