mRNA_E_fasciculatus_S2_contig9875.17874.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9875.17874.1
Unique Name	mRNA_E_fasciculatus_S2_contig9875.17874.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 5.620e-53
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 1

Query:   10 NQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGFLVATGVGWLVG 327
            ++G+AGYALGAALLQSGV AKQVTLYI AFSAMTPLGILIGAI+Q+DADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSL++GFLVATGVGWLVG
Sbjct:  248 HKGIAGYALGAALLQSGVHAKQVTLYILAFSAMTPLGILIGAIIQQDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFLVATGVGWLVG 353

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.570e-46
Identity = 85/106 (80.19%), Postives = 100/106 (94.34%), Query Frame = 1

Query:   10 NQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGFLVATGVGWLVG 327
            ++GLA YALGA+LLQSGV  KQVTL++ AFSAMTPLGIL+GA+++KD ++DSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSL++GF+V+ GVGWLVG
Sbjct:  294 HKGLAAYALGASLLQSGVYGKQVTLFVIAFSAMTPLGILLGALIEKDGEDDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFVVSAGVGWLVG 399

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5ABV8_PHYSP)

HSP 1 Score: 85.9 bits (211), Expect = 1.490e-14
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1

Query:    4 LSNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGA-VCVALAAGTFLYVSLMEVLPPELASTENGWSKMG 276
            + ++GLA +ALG+ L+QS +P   V LY+F FS M+ +GI++G I+  D+  DS  A +CVALA+GTF+YV++MEV+P E     +G    G
Sbjct:  215 IMHKGLAAFALGSGLVQSAMPVTYVMLYMFVFSFMSIIGIVVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHGGGDEG 306

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: ZIP (family transporter n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8INX4_CHLRE)

HSP 1 Score: 84.0 bits (206), Expect = 1.310e-13
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  + +    I  F+A TPLGIL+G  +   A N   GA   ALA+GTFLYV+ MEV+P ELA  +N   KMG  L+G+
Sbjct:  309 AHKGLAAYALGASIVESGASSTRFWTVIGLFAAATPLGILMGYGLSSSA-NSKPGAALSALASGTFLYVAFMEVIPKELADGKNRLLKMGVFLLGY 403

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AZN8_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.500e-13
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  +++    I  FS  TPLGI  G  +   + N + GA   ALA+GTFLYV+ MEV+P ELA  ++  +KM + L+G+
Sbjct:  319 AHKGLAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRMAKMAAFLLGY 414

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GAD1_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 3.560e-13
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  +++    I  FS  TPLGI  G  +   + N + GA   ALA+GTFLYV+ MEV+P ELA  ++  +KM + L+G+
Sbjct:  330 AHKGLAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRLAKMAAFLLGY 425

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCW4_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 3.580e-13
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  + +    I AFS  TP+GI  G  +  +A+N   GA   ALA+GTFLYV+ MEV+P ELA  ++   KM   L+G+
Sbjct:  331 AHKGLAAYALGASIVESGASSTRFWTVISAFSLATPIGIFSGFAMSSNANNSKSGAALSALASGTFLYVAFMEVIPKELADGKHRALKMLVFLIGY 426

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BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GMX7_GONPE)

HSP 1 Score: 80.9 bits (198), Expect = 1.320e-12
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  + +    I  FS  TP+GI  G  +   A + SG A+  ALA+GTFLYV+ MEV+P ELA   +  +KMG+ L+G+
Sbjct:  310 AHKGLAAYALGASIVESGASSNRFWTVIGCFSMATPIGIFAGYGMSSAASSKSGAALS-ALASGTFLYVAFMEVIPKELADGRHRAAKMGAFLLGY 404

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VTT3_CHLIN)

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-12
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  + +    I  F+A TPLGI IG  +   A N   GA   ALA+GTFLYV+ MEV+P ELA  ++   KMG  L+G+
Sbjct:  252 AHKGLAAYALGASIVESGASSARFWTVIGCFAAATPLGIGIGYGLSSSA-NSRPGAALSALASGTFLYVAFMEVIPKELADGKHRLLKMGVFLLGY 346

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B7N2_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 2.670e-12
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1

Query:    7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
            +++GLA YALGA++++SG  + +    I  F+A TPLGI +G  +   A N   GA   ALA+GTFLYV+ MEV+P ELA   +   KMG  L+G+
Sbjct:  251 AHKGLAAYALGASIVESGAGSVRFWTVIGCFAAATPLGICLGYGLSSSA-NSRPGAALSALASGTFLYVAFMEVIPKELADGRHRLLKMGVFLLGY 345

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	5.620e-53	91.51	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7...	[more]
Uncharacterized	3.570e-46	80.19	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8...	[more]
Uncharacterized	1.490e-14	45.65	protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5AB...	[more]
ZIP	1.310e-13	47.92	family transporter n=1 Tax=Chlamydomonas reinhardt...	[more]
Uncharacterized	2.500e-13	43.75	protein n=1 Tax=Volvox africanus TaxID=51714 RepID...	[more]
Uncharacterized	3.560e-13	43.75	protein n=1 Tax=Volvox reticuliferus TaxID=1737510...	[more]
Uncharacterized	3.580e-13	44.79	protein n=1 Tax=Edaphochlamys debaryana TaxID=4728...	[more]
Uncharacterized	1.320e-12	44.79	protein n=1 Tax=Gonium pectorale TaxID=33097 RepID...	[more]
Uncharacterized	1.500e-12	46.88	protein n=1 Tax=Chlamydomonas incerta TaxID=51695 ...	[more]
Uncharacterized	2.670e-12	45.83	protein n=1 Tax=Chlamydomonas schloesseri TaxID=20...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9875	contig	E_fasciculatus_S2_contig9875:257..2005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	146.0
Seed ortholog evalue	7.2e-33
Seed eggNOG ortholog	2880.D7FLN7
Model size	1749
KEGG ko	ko:K14709
KEGG TC	2.A.5.1,2.A.5.3,2.A.5.6
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	zinc ion transmembrane transporter activity
EggNOG OGs	KOG1558@1,KOG1558@2759
Cds size	225
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko02000

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842630.2934704-UTR-E_fasciculatus_S2_contig9875:256..361	1696842630.2934704-UTR-E_fasciculatus_S2_contig9875:256..361	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig9875 257..361 +
1696842630.330577-UTR-E_fasciculatus_S2_contig9875:586..2005	1696842630.330577-UTR-E_fasciculatus_S2_contig9875:586..2005	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig9875 587..2005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842630.312109-CDS-E_fasciculatus_S2_contig9875:361..586	1696842630.312109-CDS-E_fasciculatus_S2_contig9875:361..586	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9875 362..586 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9875.17874.1	prot_E_fasciculatus_S2_contig9875.17874.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9875 362..586 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9875:257..2005+
coding sequence from alignment at E_fasciculatus_S2_contig9875:257..2005+

protein sequence of mRNA_E_fasciculatus_S2_contig9875.17874.1

>prot_E_fasciculatus_S2_contig9875.17874.1 ID=prot_E_fasciculatus_S2_contig9875.17874.1|Name=mRNA_E_fasciculatus_S2_contig9875.17874.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=75bp
MTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTE
NGWSKMGSLLMGFLVATGVGWLVG*

mRNA from alignment at E_fasciculatus_S2_contig9875:257..2005+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9875.17874.1 ID=mRNA_E_fasciculatus_S2_contig9875.17874.1|Name=mRNA_E_fasciculatus_S2_contig9875.17874.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:257..2005+ (Ectocarpus fasciculatus EfasUO2)
TTCCTTTCAAACCAGGGGCTCGCCGGGTACGCGCTAGGCGCCGCCCTACT
CCAGAGTGGCGTCCCCGCAAAGCAGGTCACCCTGTACATCTTCGCCTTCT
CCGCCATGACCCCCCTGGGCATCCTCATTGGAGCCATCGTCCAAAAGGAC
GCCGATAACGACTCGGGCGGTGCCGTGTGCGTAGCGCTGGCCGCTGGAAC
GTTCCTCTATGTTTCCTTGATGGAGGTTCTCCCGCCGGAGCTCGCTTCTA
CGGAGAACGGATGGAGCAAGATGGGGTCCCTGCTGATGGGATTCTTGGTC
GCGACGGGGGTGGGTTGGCTCGTGGGGTGATCCGGTTTGGTTCATTGGGT
CGTCGGTATACGGGTCGTTCGGGTGTCTGTGGTCTATTGGAGTAAAAGTG
AGAAAGCGAGGAGCTAGCATACAAGAGATTTCCCCAGAGAAAAGGATTGG
GATGCAGCTTTTTGGTTGGCCATCTCTGAAAAAAGATTGCCCCACGAGGC
TTTTTGACCAATGAGAAGCCTAAGTGTTCACGGGGTCGACCGCTTTACTT
GCGTGTAGCGTACAGGTGTTTTTTTGCCAAGTGTACATGGTACATGAGTT
AAGTTACATGCGTGGTTCGGACGGCGGAGTGGTGATGGGTTGGATAGGAT
GGGCGTGATTTTGGTTCAAGCGGGGGATTGGATGTTGTTTGGGTAACGCG
GCTTGTGTAGGAGACGTCAGGACTATGTAGTCTGCAATGCTGCTGTGAGG
TTCTAGACTTGGAAAGCGACGCCTGCCGTGTAGTTGCTCCTATTTCGAGA
GGTTGTGCACGTCGTCTTCGATGCGGTTTTGAGGTTCAGACTTCGAAAGC
GCCGCCTGCCGTGTTTTTGCTGTCAACGTCTCAGCCAACGCTAAAAGGTG
GGAAGCGCAGTCTCAATCGTGTGGTTTATTGAACACCTCAACTGAGATAC
TGAGATACACCTGTGACAGTGCCTGGAGCAGACAATAGCAGGCGACGTGT
AGCATGTTTGTGCTCGAGGCTTCGTTCATGCATGGTGTTCGTCCGCTTGA
AAGGCAGGTCGCACTATTTAGTCGTTCGTTGGCGCCATACCCTGTTGAGT
TTGGACGCTACCACCCACCTCCATCGTAGGTTTCCACGCTTTCTAGTAGT
CGTTTGTCGATATATACATGCACCACGTACATGGCAGTGGGGAGCGCGGG
CGTTAGCTACTTGTAGCCCCCCCTCCTCCTCCCCCTCATTTTGGTGTTTG
ATGGTGCACCGTAGGCGGCGTCATGGGGGGGTGGATCGGGGGTTTTGGCA
CAGATGTCGGGATGGGCTACAGCAGGAGTTTATTGAGTCACTTCGTACCC
TAGCAATTGTTTTCAGTGTGCAACCACGTCTGCGTGTGGGGAAAGCTGAG
AGGCTGGGTCGTTATTGATGTGCTCTTCTTTGTCTTTCGGGTATTCCCCC
GATCCTTGTCGTATCTGTGGGAGAGTGGAGTTCTGAGTCGTGTTGAAAGT
TGTGTGGGCGGATGTGGTTCGTTCGTGTTTTTGTAGAAGGCAGGTCGTAC
AGATCTTGCCTCGTACATAGGAGTAGTTAAAGATTTTTCCTGCCAGCATT
TGTTTTTTCATAACAGGTACAAGGAGTCAGTACAATGGAACGACACACGT
TGTCCGGTGCCACCGGTCTGTTCTTGGATGTGGCATCACCGCCATTTACG
CAGTGTTCGCAACATGTTGTTGTCTTCTCTTCTTACTCATACCTTCCAC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9875:257..2005+

>mRNA_E_fasciculatus_S2_contig9875.17874.1 ID=mRNA_E_fasciculatus_S2_contig9875.17874.1|Name=mRNA_E_fasciculatus_S2_contig9875.17874.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=225bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:257..2005+ (Ectocarpus fasciculatus EfasUO2)
ATGACCCCCCTGGGCATCCTCATTGGAGCCATCGTCCAAAAGGACGCCGA
TAACGACTCGGGCGGTGCCGTGTGCGTAGCGCTGGCCGCTGGAACGTTCC
TCTATGTTTCCTTGATGGAGGTTCTCCCGCCGGAGCTCGCTTCTACGGAG
AACGGATGGAGCAAGATGGGGTCCCTGCTGATGGGATTCTTGGTCGCGAC
GGGGGTGGGTTGGCTCGTGGGGTGA