mRNA_E_fasciculatus_S2_contig9875.17874.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI) HSP 1 Score: 194 bits (492), Expect = 5.620e-53 Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 1 Query: 10 NQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGFLVATGVGWLVG 327
++G+AGYALGAALLQSGV AKQVTLYI AFSAMTPLGILIGAI+Q+DADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSL++GFLVATGVGWLVG
Sbjct: 248 HKGIAGYALGAALLQSGVHAKQVTLYILAFSAMTPLGILIGAIIQQDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFLVATGVGWLVG 353
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI) HSP 1 Score: 177 bits (448), Expect = 3.570e-46 Identity = 85/106 (80.19%), Postives = 100/106 (94.34%), Query Frame = 1 Query: 10 NQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGFLVATGVGWLVG 327
++GLA YALGA+LLQSGV KQVTL++ AFSAMTPLGIL+GA+++KD ++DSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSL++GF+V+ GVGWLVG
Sbjct: 294 HKGLAAYALGASLLQSGVYGKQVTLFVIAFSAMTPLGILLGALIEKDGEDDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFVVSAGVGWLVG 399
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5ABV8_PHYSP) HSP 1 Score: 85.9 bits (211), Expect = 1.490e-14 Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 4 LSNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGA-VCVALAAGTFLYVSLMEVLPPELASTENGWSKMG 276
+ ++GLA +ALG+ L+QS +P V LY+F FS M+ +GI++G I+ D+ DS A +CVALA+GTF+YV++MEV+P E +G G
Sbjct: 215 IMHKGLAAFALGSGLVQSAMPVTYVMLYMFVFSFMSIIGIVVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHGGGDEG 306
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: ZIP (family transporter n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8INX4_CHLRE) HSP 1 Score: 84.0 bits (206), Expect = 1.310e-13 Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG + + I F+A TPLGIL+G + A N GA ALA+GTFLYV+ MEV+P ELA +N KMG L+G+
Sbjct: 309 AHKGLAAYALGASIVESGASSTRFWTVIGLFAAATPLGILMGYGLSSSA-NSKPGAALSALASGTFLYVAFMEVIPKELADGKNRLLKMGVFLLGY 403
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AZN8_9CHLO) HSP 1 Score: 83.2 bits (204), Expect = 2.500e-13 Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG +++ I FS TPLGI G + + N + GA ALA+GTFLYV+ MEV+P ELA ++ +KM + L+G+
Sbjct: 319 AHKGLAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRMAKMAAFLLGY 414
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GAD1_9CHLO) HSP 1 Score: 82.8 bits (203), Expect = 3.560e-13 Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG +++ I FS TPLGI G + + N + GA ALA+GTFLYV+ MEV+P ELA ++ +KM + L+G+
Sbjct: 330 AHKGLAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRLAKMAAFLLGY 425
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCW4_9CHLO) HSP 1 Score: 82.8 bits (203), Expect = 3.580e-13 Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG + + I AFS TP+GI G + +A+N GA ALA+GTFLYV+ MEV+P ELA ++ KM L+G+
Sbjct: 331 AHKGLAAYALGASIVESGASSTRFWTVISAFSLATPIGIFSGFAMSSNANNSKSGAALSALASGTFLYVAFMEVIPKELADGKHRALKMLVFLIGY 426
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GMX7_GONPE) HSP 1 Score: 80.9 bits (198), Expect = 1.320e-12 Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG + + I FS TP+GI G + A + SG A+ ALA+GTFLYV+ MEV+P ELA + +KMG+ L+G+
Sbjct: 310 AHKGLAAYALGASIVESGASSNRFWTVIGCFSMATPIGIFAGYGMSSAASSKSGAALS-ALASGTFLYVAFMEVIPKELADGRHRAAKMGAFLLGY 404
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VTT3_CHLIN) HSP 1 Score: 80.1 bits (196), Expect = 1.500e-12 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG + + I F+A TPLGI IG + A N GA ALA+GTFLYV+ MEV+P ELA ++ KMG L+G+
Sbjct: 252 AHKGLAAYALGASIVESGASSARFWTVIGCFAAATPLGIGIGYGLSSSA-NSRPGAALSALASGTFLYVAFMEVIPKELADGKHRLLKMGVFLLGY 346
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B7N2_9CHLO) HSP 1 Score: 79.3 bits (194), Expect = 2.670e-12 Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 Query: 7 SNQGLAGYALGAALLQSGVPAKQVTLYIFAFSAMTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLLMGF 294
+++GLA YALGA++++SG + + I F+A TPLGI +G + A N GA ALA+GTFLYV+ MEV+P ELA + KMG L+G+
Sbjct: 251 AHKGLAAYALGASIVESGAGSVRFWTVIGCFAAATPLGICLGYGLSSSA-NSRPGAALSALASGTFLYVAFMEVIPKELADGRHRLLKMGVFLLGY 345 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9875.17874.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9875.17874.1 >prot_E_fasciculatus_S2_contig9875.17874.1 ID=prot_E_fasciculatus_S2_contig9875.17874.1|Name=mRNA_E_fasciculatus_S2_contig9875.17874.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=75bp MTPLGILIGAIVQKDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTEback to top mRNA from alignment at E_fasciculatus_S2_contig9875:257..2005+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9875.17874.1 ID=mRNA_E_fasciculatus_S2_contig9875.17874.1|Name=mRNA_E_fasciculatus_S2_contig9875.17874.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:257..2005+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9875:257..2005+ >mRNA_E_fasciculatus_S2_contig9875.17874.1 ID=mRNA_E_fasciculatus_S2_contig9875.17874.1|Name=mRNA_E_fasciculatus_S2_contig9875.17874.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=225bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:257..2005+ (Ectocarpus fasciculatus EfasUO2)back to top |