mRNA_E_fasciculatus_S2_contig9873.17872.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9873.17872.1
Unique NamemRNA_E_fasciculatus_S2_contig9873.17872.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.210e-26
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:   58 FFATGMTCNFSLATAMGGSRSLPELYVLQTSYSVFLPVLMFGIPVVVDFWVQSLPMH 228
            FFA GM CNFSLATAMGGS SLPELYVLQT+Y+VFLPVLMFGIP+VVDFWVQSLPMH
Sbjct:  130 FFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMH 186
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BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.800e-25
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:   73 MTCNFSLATAMGGSRSLPELYVLQTSYSVFLPVLMFGIPVVVDFWVQSLPMH 228
            M CNFSLATAMGGSRSLPELYVLQT+Y+VFLPVLMFGIP++VDFWVQSLPMH
Sbjct:    1 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMH 52
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.050e-16
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   91 LATAMGGSRSLPELYVLQTSYSVFLPVLMFGIPVVVDFWVQSLPMH 228
            L  + G +RSLPELYVLQTSYSVFLPVLMFGIP+VVDFW QSLPMH
Sbjct:   17 LGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMH 62
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 9.310e-5
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1 
Query:  163 LPVLMFGIPVVVDFWVQSLPMH 228
            LPVLMFGIP+VVDFWVQSLPMH
Sbjct:    3 LPVLMFGIPIVVDFWVQSLPMH 24
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized3.210e-2689.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.800e-2590.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.050e-1682.61protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.310e-595.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9873contigE_fasciculatus_S2_contig9873:238..3078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size250
Hectar predicted targeting categorymitochondrion
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.1655562-CDS-E_fasciculatus_S2_contig9873:237..4301696842630.1655562-CDS-E_fasciculatus_S2_contig9873:237..430Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 238..430 -
1696842630.1750934-CDS-E_fasciculatus_S2_contig9873:3022..30781696842630.1750934-CDS-E_fasciculatus_S2_contig9873:3022..3078Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 3023..3078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9873.17872.1prot_E_fasciculatus_S2_contig9873.17872.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9873 238..3078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9873.17872.1

>prot_E_fasciculatus_S2_contig9873.17872.1 ID=prot_E_fasciculatus_S2_contig9873.17872.1|Name=mRNA_E_fasciculatus_S2_contig9873.17872.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
FARKLWSGSSCRIAGGEICFFATGMTCNFSLATAMGGSRSLPELYVLQTS
YSVFLPVLMFGIPVVVDFWVQSLPMHVSEQAI*
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mRNA from alignment at E_fasciculatus_S2_contig9873:238..3078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9873.17872.1 ID=mRNA_E_fasciculatus_S2_contig9873.17872.1|Name=mRNA_E_fasciculatus_S2_contig9873.17872.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2841bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:238..3078- (Ectocarpus fasciculatus EfasUO2)
TTCGCCAGGAAACTGTGGTCGGGAAGCAGCTGCAGAATCGCAGGCGGGGA
AATATGGTGAGAGGGGCTTAGCGACGGTGACCCTTTTTGTTGCGGGCGTC
TTATCGTTCTCGGTGATTGGCCCCTTCTTTTCTTTCGCGACAGACAGACT
GTTAAAAAGTACAGCATATCCACTATGCTTCAAGGCAGCTTACTTTTATT
AAGGTGTACAGCATATCCACGATGCTAAAAGTCAGCGCTGCCTTTTAGCA
TAGTGGATATGCTGTACATCTTAACACAGGCCATGCGGCAAAAGATATCA
TCCACAACGACATCTTTGCGAAACGGAGCGCCACTCCTACACCGAGTGGG
ATGCGACCCGCACCACCCATGATGACTCTGTAGGCAAGTCTCCGCAGCCG
ATGGATGTTGCAGTTGTGCAGCGAAGCGTACAGCCGTCGGACAGAGCACA
CCAACGCAGCGACTGGCAAATACATATGGTTTCTTGTCCATATACTTGTA
TATTGTAGTATATGCTAATGGCTTGGTCGCTCACATGCATCGGCAGGCTC
TGCACCCAGAAGTCCACGACAATCGGGATTCCGAACATCAGAACCGGGAG
AAACACCGAATAATTTGTTTGTAAAACATACAACTCCGGCAGTGAAAGGC
TACCGCCCATTGCCATCGCCCGGAAGAAGTTGCACGTCATTCCTACGGCA
AAGAAGCTTCGGTGCCAACGGCGACAGAGAGCATAGTAGGGGGCGATGGA
CAAGAAGGGACAGAGGGCGGAGGTGCTCTTGAGAGGTTTTTCTCTGCAGT
TTGCGCGCACGCTTAAAAACTTGGCAGCCAAGATTTTCATGCTCGACACT
AAGTGAACAATTTGTCAGAACACACGTAGTCTACGTGTTGTCGGCTCAAT
TCACTCACGCGTTGATGGGTTAGTCTATTAGGAAAAAATAATTGAGTCCC
TACGTGTAGCTGCCATTGGTAGGGCCGAAGAACCCCAGCCTCAACCAAAA
CTAGAGGTGTGATTCGGATCTCATCTACATGTACTTCCATCTGCGACTGG
GCAACAACTTCGTGCACCGGCGACGAACTGAGGTCGTGTTTCCGACAGGT
GTTTTTAAACCACGTAGACTACATGTAGCAGTAAAATTTCCCTTCAAATA
CGAATAGTCTATACACGCACCTGCCACAGAGCAGCACCCGAAAGCGCATG
AGGGCTGGTCTGGAGCTCCGATGAACTCTCGAAAGGTGGTGAAACTTGTT
CACATGCCACAGGAGAAATATCGAGGTGAAGAGAGAAGTGACAGCGATTG
TGGCGTATGCCGTGACAAGAACAGACCTCGGGACACACGACGAACGGCCC
ATTGAGTCTCTCGATGCATATCCCCAGTCACACACGCACGTGCTAGCCCC
GGAGACGGTTGTACAAGCCCCGTTTCCACCCCACAGCGGGTGTCGGCACC
CACTGACGCAGCCTGCCATTGGCAGTACTATAATAGTAGCTTTATATACG
AATCACATAGCGCTCGCGGGTTCCATGCTCTCGGGACCTCCATTTGGTAC
AATGTACGTACGGCCGCGCCGAAAAGAGCGGGTAATTAGGCCGCATCCTA
AAAAACAAAAAACAAAAAAAAACTGTAACCGGCAAGATATCCTCGAACGG
GCACATCTTCTAAAGTTCACCTTTTAGTGCCCTAGATGTGTAGTCCATGA
GTCTCCCAGTCTTTCTTATCTGCCGCCTGTCCATGAAGACTAATAATAGT
GGTATAGACATGTAGGTAGACTTTGTAGAATAGACATGTGTTTGTTTCGT
CTCTTTGAGACAACAACACGATCCGAGAGCGTGACGACTCAGTCAACCCA
AGTAGTAACAGCTACAAGTTAGGCCAGGCTTGACACCAGACTGCTTCTGT
TTTAGAATGACAGCTTGCGTCAGCGGGTGTCGACACCCGCTGTGGGGTGG
AAACGGGGCGTGCACAACCGTCTCCGGGGCTAGCACGTGCGTGTGTGACT
GGGGATATGCATCGAGAGACTCAATGGGCCGTTCGTCGTGTGTCCCGAGG
TCTGTTCTTGTCACGGCATACGCCACAATCACTGCTATTTCTCTCTTCAC
CGCGATCTATCTCCTGTGGCATGCGAACAAGTTTCGCCGCCTTTCGAGAG
TTCATCGGAGCTCCAGACCGGCCCTCATGCGTTTTCGGGTTCTACTCTGT
GGCAGGTGCGCGTGCAAGTTCATATTGCGAAAGCGAACTTTAGGAAACCA
AGTTGGTCATGCAACGTCATGATTTCATCGCTAATCGCCGAACGCTACAA
TATGCATGCTGTAGTGTCATCTGCGGATAGCGAAGAAGACTACATGCAGA
CTAAAAGAAGTCTAGTCTAATTTTCGGCTGTCCCTTTTGTGATCAAAAAC
ACTTGCGTAGTGCTTTCTGTCACTTTTCGGCCATCCAAATAGAGACAAAC
CTCACCTCCTGTGCCTTGCTACGGTAAGAATCATGAACCGAAGACTACTG
TAGTCTACATACTGAACATCTTGTCGACCACCAGCAGCAGATGAACTTCA
AAATGCATGAAAGACCTTTCAGGAGCACACACCCACCTTCTGCCCCTGTC
GCCCACCCCCCCAAAACTGTCCGCTCTATCTCGCCATGGGCACCGAAGCT
TCTTTGCCACAGGAATGACGTGCAACTTCTCGCTGGCGACGGCAATGGGC
GGTAGCCGTTCACTCCCGGAGTTGTACGTCCTGCAAACAAGCTACTCGGT
GTTTCTCCCGGTTCTCATGTTCGGGATCCCGGTTGTCGTGGACTTCTGGG
TGCAGAGCTTACCGATGCATGTGAGCGAGCAAGCCATATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9873:238..3078-

>mRNA_E_fasciculatus_S2_contig9873.17872.1 ID=mRNA_E_fasciculatus_S2_contig9873.17872.1|Name=mRNA_E_fasciculatus_S2_contig9873.17872.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:238..3078- (Ectocarpus fasciculatus EfasUO2)
TTCGCCAGGAAACTGTGGTCGGGAAGCAGCTGCAGAATCGCAGGCGGGGA
AATATGCTTCTTTGCCACAGGAATGACGTGCAACTTCTCGCTGGCGACGG
CAATGGGCGGTAGCCGTTCACTCCCGGAGTTGTACGTCCTGCAAACAAGC
TACTCGGTGTTTCTCCCGGTTCTCATGTTCGGGATCCCGGTTGTCGTGGA
CTTCTGGGTGCAGAGCTTACCGATGCATGTGAGCGAGCAAGCCATATGA
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