mRNA_E_fasciculatus_S2_contig9873.17872.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 3.210e-26 Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1 Query: 58 FFATGMTCNFSLATAMGGSRSLPELYVLQTSYSVFLPVLMFGIPVVVDFWVQSLPMH 228
FFA GM CNFSLATAMGGS SLPELYVLQT+Y+VFLPVLMFGIP+VVDFWVQSLPMH
Sbjct: 130 FFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMH 186
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.800e-25 Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 1 Query: 73 MTCNFSLATAMGGSRSLPELYVLQTSYSVFLPVLMFGIPVVVDFWVQSLPMH 228
M CNFSLATAMGGSRSLPELYVLQT+Y+VFLPVLMFGIP++VDFWVQSLPMH
Sbjct: 1 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMH 52
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.050e-16 Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 Query: 91 LATAMGGSRSLPELYVLQTSYSVFLPVLMFGIPVVVDFWVQSLPMH 228
L + G +RSLPELYVLQTSYSVFLPVLMFGIP+VVDFW QSLPMH
Sbjct: 17 LGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMH 62
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE) HSP 1 Score: 48.5 bits (114), Expect = 9.310e-5 Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1 Query: 163 LPVLMFGIPVVVDFWVQSLPMH 228
LPVLMFGIP+VVDFWVQSLPMH
Sbjct: 3 LPVLMFGIPIVVDFWVQSLPMH 24 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9873.17872.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9873.17872.1 >prot_E_fasciculatus_S2_contig9873.17872.1 ID=prot_E_fasciculatus_S2_contig9873.17872.1|Name=mRNA_E_fasciculatus_S2_contig9873.17872.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp FARKLWSGSSCRIAGGEICFFATGMTCNFSLATAMGGSRSLPELYVLQTSback to top mRNA from alignment at E_fasciculatus_S2_contig9873:238..3078- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9873.17872.1 ID=mRNA_E_fasciculatus_S2_contig9873.17872.1|Name=mRNA_E_fasciculatus_S2_contig9873.17872.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2841bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:238..3078- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9873:238..3078- >mRNA_E_fasciculatus_S2_contig9873.17872.1 ID=mRNA_E_fasciculatus_S2_contig9873.17872.1|Name=mRNA_E_fasciculatus_S2_contig9873.17872.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:238..3078- (Ectocarpus fasciculatus EfasUO2)back to top |