mRNA_E_fasciculatus_S2_contig9870.17869.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9870.17869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE) HSP 1 Score: 920 bits (2379), Expect = 0.000e+0 Identity = 743/1038 (71.58%), Postives = 751/1038 (72.35%), Query Frame = 1 Query: 1 MQQQHFASXXXXXXXXG-TDQRWEQLKQAPHHPQPQHHPAGPASWSGGVNTLAGVGARTNSLAITHNQHQHQ--HAPYVQQXXXXXXXXXXXXAPPLAPPPHPVYDTSRRSSNGAAELFPPAPAPAALWAANRVPTAGPPADNRATNQHPVGRSVSVSYSPPLRAVAAPATGAGATDGSAHRPLLVXXXXXXXXXXXX---------RPTSRGTYPASGNSLSGFAQQPNGXXXXXXXXGS------------LSGAQNAGGKQKE-SGGKAPAARETARVSSGIWRGRGGXXXXXXXXXXXXXXXXGSLDLSNLRNSMPGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAAATAGKPSAVERGEERGIAYNDRRGENAERSPERGTASAAAAAAVDEEIEEGEWCWQATTEERPMSEQPGAAAGAXXVAAVGGR-SPSGG-RENGDRSSSAWDGSRGGSPIRPPSISGKRGREQSSLSPPRAPAKYTARSGRDPRGFRAAXXXXXXXXXXXXXXXXXXXXXXXXXP-SAGQDWRQERRPPSLALPSPAAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVSFVSLPAASPASPPRPLLSLPQPPHGAPRLMYAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSTAAPLSLPMPMAPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLKLTVRVSDAEPSAQEAPVFSSXXXXXXXXXXXRGGVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAMNNTPPRRLSPPPEAFPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGAFDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVAFLQPLAPSKTPFTIAAHQRHRRVSQEQKQK 3030
MQQQH+ XXXXXXXX DQRWEQ+KQA H P PQ HPA ASWSGGVNTLA VG RTNSLAI HNQHQHQ APYVQQ XXXXXXXXXXX WAANRVP A PPADNRATNQHP GR+VS YSPPLRAVA PA GATDGSAHRP XXXXXXXXXXXX RPTSRGTYPA GNSLSGFAQQPNGXXXXXXXX L+GA+NAGGKQ+E S GKAPAARETARVSSGIWRGRG XXXXXXXXXXXXXXXX LDLSNLR SMPGR XXXXXXXXXXXXXX XXXXXXXXXX EVAAAA KPSAV RGEER A NDRR ENAERSPERGTASA A DEEIEEGEWCWQ TE P SEQPGAAAG X R SPSGG R NG+RSSS WDGSRGGSP RPPS SGKRGREQSSLSPPR PAKYTARSGRDPRGF XXXXXXXXXXXXXXXXXXXXXXXXX SAGQDWRQERRPPSLALPSPAAQA XXXX XXXXXXXXXXXX VSFVSLPAASPA PPRPLLSLP PPHG PRLMYAV XXXXXXXX XXXX XXXX APSTA PLSLPMPMAPAAP X XXXXXXXXXXX XXX GLKLTVRVSDAEPSAQEAPVFSS G VSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGA+NNTPPRRLSPPPEA PDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGA DLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVV FLQPLAPSKTPFTIAAHQRHRRVSQEQKQK
Sbjct: 1 MQQQHYXXXXXXXXXXXXNDQRWEQVKQAQHQPHPQQHPAA-ASWSGGVNTLASVGGRTNSLAIAHNQHQHQLQQAPYVQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXSWAANRVP-APPPADNRATNQHPAGRNVS--YSPPLRAVAPPA--GGATDGSAHRPXXXXXXXXXXXXXXXXXXXXXXXXRPTSRGTYPACGNSLSGFAQQPNGXXXXXXXXXXXXXXXXXXXXXXLTGAKNAGGKQQEESHGKAPAARETARVSSGIWRGRGXXXXXXXXXXXXXXXXXXXLDLSNLRTSMPGR------------------XXXXXXXXXXXXXXVAGRATALNSIEAEKSGSXXXXXXXXXXIEEGEAGEEVAAAA---KPSAVARGEERAAALNDRRSENAERSPERGTASATAXXXADEEIEEGEWCWQEKTEGSPKSEQPGAAAGVGXXXXXXXRRSPSGGGRANGNRSSSTWDGSRGGSPTRPPSTSGKRGREQSSLSPPRGPAKYTARSGRDPRGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQDWRQERRPPSLALPSPAAQAAATAPGTSPSXXXXQQLQPSYGAXXXXXXXXXXXXX-VSFVSLPAASPAPPPRPLLSLPHPPHGPPRLMYAVLPPXXXXXXXXPQPXXXXPQFVIQPGMTVTVPGTTLGAAAGPIMLRPPAPLLFTPPPVTAXXXXVAPSTAVPLSLPMPMAPAAPPRPXTFXXXXXXXXXXXRKPRRGGLKKPSQGXXXXGLKLTVRVSDAEPSAQEAPVFSSDDEDDDKP----GRVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHRRVSQEQKQK 1001
BLAST of mRNA_E_fasciculatus_S2_contig9870.17869.1 vs.
Match: Ankyrin (repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI) HSP 1 Score: 443 bits (1139), Expect = 1.070e-143 Identity = 218/236 (92.37%), Postives = 220/236 (93.22%), Query Frame = 1 Query: 2278 LKLTVRVSDAEPSAQEAPVFSSXXXXXXXXXXXRGGVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAMNNTPPRRLSPPPEAFPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGAFDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVAFLQPLAPSKTPFTIA 2985
LKLTVRVSDAEPSAQEAPVFSS GGVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAG+RDCVEGA+NNTPPRRLSPPPEA PDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGA DLVKDLAERKADPAVKDSHGNLPVDLAAMQGKD VV FLQPLAPSKTPFTIA
Sbjct: 45 LKLTVRVSDAEPSAQEAPVFSSDDDDDKP-----GGVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGNRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
BLAST of mRNA_E_fasciculatus_S2_contig9870.17869.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJJ4_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.630e-13 Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 2671 SVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGAFDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVAFLQPL 2955
S+L KRM+RAI++A R + EP++ L+ G S N+ R + ET L AAAYCG D+ K L E ADP DS GN V LA +QG +++ ++ L
Sbjct: 471 SILAKRMDRAIWDAFRSAEFEPLLSLLDHGASANYSRLSKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLARVQGHNQLAEYIHGL 565
BLAST of mRNA_E_fasciculatus_S2_contig9870.17869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL10_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 3.200e-7 Identity = 62/227 (27.31%), Postives = 85/227 (37.44%), Query Frame = 1 Query: 2419 HEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRA---GDRDCVEGAMNN--TPPRRLS--------------------------PPPEAFPDEREWPEYPKTMTRNKDGTS-----------------------VLEKRMERAIYEAIRLGDTEP----IVGLIRAGVSPNFKRPAGETCLHAAAYCGAFDLVKDLAERKADPAVKDSHGNLPVDLAAMQGK 2925
H F++R C +C VRIC+AC +C+ C+R G C G + +PP S P PE D W K G + L+ R++RAIY A E ++ L+R N++R GET LHAAAY GA + + + AD DSHGN P+DLA G+
Sbjct: 700 HRFRYRNVTAPG---CTLCELTHVRICSACSRCVCCYREERFGPACCETGDESGRWSPPTDASSXXXXXXXXXXXXXXXXXXXXXILRKPKPEIAGDA--WRPGGKRDAGGGGGGNDXXXXXXXXXXXXXXPAGAPKLHTLQGRVDRAIYAAFTSDGKEERFAALLALLRHSGLHNYRRQTGETALHAAAYHGALRAARAMLDGGADADASDSHGNTPLDLARQHGR 921
BLAST of mRNA_E_fasciculatus_S2_contig9870.17869.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA) HSP 1 Score: 58.5 bits (140), Expect = 1.790e-6 Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 1 Query: 2686 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGAFDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVAFLQPL 2955
R R + + +G T L++ G PN R G T LH AA G D V+ L ADP +D ++P DLAA G ++V +FLQ L
Sbjct: 36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9870.17869.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9870.17869.1 >prot_E_fasciculatus_S2_contig9870.17869.1 ID=prot_E_fasciculatus_S2_contig9870.17869.1|Name=mRNA_E_fasciculatus_S2_contig9870.17869.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1166bp MQQQHFASGGGAAAAGGTDQRWEQLKQAPHHPQPQHHPAGPASWSGGVNTback to top mRNA from alignment at E_fasciculatus_S2_contig9870:397..4701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9870.17869.1 ID=mRNA_E_fasciculatus_S2_contig9870.17869.1|Name=mRNA_E_fasciculatus_S2_contig9870.17869.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4305bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9870:397..4701- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9870:397..4701- >mRNA_E_fasciculatus_S2_contig9870.17869.1 ID=mRNA_E_fasciculatus_S2_contig9870.17869.1|Name=mRNA_E_fasciculatus_S2_contig9870.17869.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3498bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9870:397..4701- (Ectocarpus fasciculatus EfasUO2)back to top |