mRNA_E_fasciculatus_S2_contig985.17854.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK1_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 1.080e-129
Identity = 219/237 (92.41%), Postives = 223/237 (94.09%), Query Frame = 1

Query:    1 SCRDGFLWRTRSYLRAWDRGIAVVVRVSSXXXXXXXXXXXXXXXXXXXLAAAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE 711
            SC DGFLWRTRSYLRAWDRGIAVVV  S XXXXXXXXXXXXXXXXX    AAEPSGRLCEGV+LLETALGVAEG LPP QFQQFWTALAS +DLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSL RRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGG VEEAVRG GWDGWREEGGALSPEGTQMRDMLENVGVRR+GPAEASILLDKRLKGDRLAVLGYLSAAAG+
Sbjct:  242 SCLDGFLWRTRSYLRAWDRGIAVVVHASXXXXXXXXXXXXXXXXXXSF--AAEPSGRLCEGVQLLETALGVAEGCLPPGQFQQFWTALASGLDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGGSVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGK 476

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BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 7.200e-121
Identity = 224/263 (85.17%), Postives = 228/263 (86.69%), Query Frame = 1

Query:    1 SCRDGFLWRTRSYLRAWDRGIAVVVRVSSXXXXXXXXXXXXXXXXXXXLAAAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEK--------------------------SQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE 711
            SCRDGFLWRTRSYLRAWDRGIAVVVR  +XXXXXXXXXXXXXXXXXXX   AEPSGRLCEGVELLETALGVAEG LPP QFQQFWTALASE+DLTLVKQIVARRVEM+QDEGLQLLADLKVLMGPFDSL RRRPERHFPALAEAAVLLSLEK                          SQLRSLSSGLDAHGGGVEEAVRG GWDGWREEGGALSPEGTQMRDMLENVGVRR+GPAEASILLDKRLKGDRLAVLGYLSAAAGE
Sbjct:  795 SCRDGFLWRTRSYLRAWDRGIAVVVR--AXXXXXXXXXXXXXXXXXXXXXXAEPSGRLCEGVELLETALGVAEGCLPPGQFQQFWTALASELDLTLVKQIVARRVEMSQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEKDGRTHARKGMNTTKRTLHIEGSLFAQSQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGE 1055

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BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: RAD50-interacting (protein 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86F44)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-5
Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 1

Query:  175 CEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEKSQLRSLSSGLD---AHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRD---MLENVGVRRLGPAEASILLDKR 657
            C   E+L   L   + +L      Q W  L S+++  L ++++       +   LQL  D+   + P  S    +PE HF  + E   LL++ K     L   LD     G   EE           EEG A   +GT +R    +L  +GV +L P+EA ++LD R
Sbjct:  674 CPMFEVLSEHLHWLKDTLSIHLLSQAWQILCSDLNKFLYQKLILVN-NFNEGGALQLQFDMTRNLFPLFSQFTEKPENHFKEIKEVCFLLTISKGSALLLREALDFPNRQGSSSEED----------EEGTAKQKDGTSLRGPARVLAEMGVHKLTPSEAKVILDLR 829

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
Uncharacterized	1.080e-129	92.41	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	7.200e-121	85.17	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
RAD50-interacting	1.220e-5	28.14	protein 1 n=1 Tax=Ischnura elegans TaxID=197161 Re...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig985	contig	E_fasciculatus_S2_contig985:309..4553 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig985:309..4553+
coding sequence from alignment at E_fasciculatus_S2_contig985:309..4553+

protein sequence of mRNA_E_fasciculatus_S2_contig985.17854.1

>prot_E_fasciculatus_S2_contig985.17854.1 ID=prot_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
SCRDGFLWRTRSYLRAWDRGIAVVVRVSSSAAATASSALPGGPSSSSSLA
AAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQI
VARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSL
EKSQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLE
NVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE

mRNA from alignment at E_fasciculatus_S2_contig985:309..4553+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig985.17854.1 ID=mRNA_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4245bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:309..4553+ (Ectocarpus fasciculatus EfasUO2)
TCCTGCCGCGATGGTTTCCTGTGGCGCACGAGGTCGTACCTGCGCGCGTG
GGACAGGGGTATCGCCGTCGTCGTGCGCGTCTCCTCCTCGGCGGCGGCGA
CGGCTTCTTCGGCCCTGCCCGGTGGTCCGTCGTCATCGTCGTCGTTAGCA
GCAGCCGAACCCTCGGGGCGTCTTTGCGAGGGGGTGGAGCTGCTCGAGAC
GGCCTTGGGAGTGGCTGAAGGGAGTCTCCCCCCGGTGAGTCAATCAGCGA
AACGGTCATGGCCTACATTTTGCCCATCCCGGCCTATCGCCGACTAGGCG
GCTGAGAGAGCTTTTTCTGGACGAAGTTGTAGCAGTGGTAAGTGGCTTCG
TTAGGTGAGGGGAAGGTCGGTCAGGCCACAGGGCAGTCTCATCCAACGAG
TAGCCTTTTGCGCCTGGTACAATGCGAGGTGTTGGAGGTATCGCCCGGAA
AGGCAGGACATGACGAAAAGAAAAAGTCGTCTATACCGAACGGCAGTTCT
GTTCGTTGGGCCTTGCCTGTCTGTCTTTCTGTCTATGTGGAATTGTCGTT
TTTGTAGCGATCTTCTTCGCTGCGATCACTTGGGTGAACGTGTCTCGACG
AGATTGATCTTTCCAACACCACCCTTTGCTCTTTGCCCTTTGCGGCATTG
ACAACATTGACAACATTGACAACATTGACAACATTGACAACATTGACAAC
ATTGACAACATTGACTACCTCTTGGTTGTGGAGCTATCGAGCCGTGACGC
GCGAGTCTCGGAGGGTTTGCGGTCACCGGCACAAACACGGCGGTAGCAAT
GCGTGATGCGACTTGTCTTTGCTTTGGCGGTCGAGATATCGTCGAGGCGA
CGAGTTGTAGAGCGACGCCGGACACGAGAGGTCCAAAGGCCAGGGAGTGC
AACAGACTCAATAAATGGGATTTGGTCTCTGCATGGGCGAATGAGAAAAC
TCCCATCGCCTGTCCAGCGAAGTGTCCGAAAGATGCCAAGGGCGAACGTA
CGACAACGAATACACGACTCCCGTATATGTTATGAGGGTGCCAGGGCCGT
TTGGTACATAGTAGGATAATTGATGGTATTTTTCTCTTCCTCATGTATTC
ACGTCCCCGCCTTCCTCCTCCTCCTCTTCTTGTTGCTCTTCCTCTTCTTT
TTTCACGGAAACAGGCCCAGTTCCAGCAGTTCTGGACGGCACTGGCGAGC
GAGGTGGACCTGACGCTCGTAAAGCAGATCGTCGCCCGCAGGGTGGAGAT
GACCCAGGACGAGGTAGGATATCACAGTAGCCGCAGTGTTCTCTGTACCG
CCACGGCCAAGGGAAGCGCGGGTTTGCTGTCATCTGCTTGAGTTGAAGGA
GAGGGCGTGCGCGACGGCGGCACACTCACCGCCCGTTCCTTGCTGCTCGT
GGCATGCCCGCATCGTGTATCACTCCTCGCTGGGCAGTCTTGGCGTCTGT
GTGTATCACTTTTATCACTTTGCATGCACCACCCGTCCACAGCTTCTCGG
TGAAGACGATGATGATAATGAGGGGGATGATGTTGAGGTACGCGACGGTG
GTACACACATACACATGTGCCGACGACGGCGTAGTGACTCCCTCCCGCAG
GACTGTTAATGTTGGTGGTGGTGACGCCGATCGCGCCGATGACACCTACG
AGAAGATGTGTTAATTTTTTATTTTGTCTTCACTTCAATTCAAAATCAGC
GCTCACAGCACACTTGTGCCGTTTTCTCCAACCCGTGGCCACATCACACA
GAAGGTAAGGGACGATGGTCTAACAATATACAATGGTTGATTTCGCGTCG
ACGGCGGCGTGCAGGGGCTACAGCTGTTGGCGGACCTGAAGGTGCTGATG
GGGCCCTTCGACTCCCTCACGCGGCGCCGGCCGGAGAGACACTTCCCGGC
CTTAGCCGAGGCGGCGGTGCTGCTGTCGCTGGAAAAGGTACGGATGATGG
TGGATTTGCGATTGTTTTTTCTCAACCAGGTATGGACGCCAGGATGGTCA
GCGTTTTCCACCGTATCGATCGATGCACACCCACGCAAGGGCATGGATCC
GAAAGAATAGGGACGCTAGCGAACTACAAGTAGTACAAACATTCTTGTAG
GGTCTTTCTTTACTTGGGGTGATTTCCCACTAACGCGACCAGTGGTGTGT
GTTTGGTGTGTGGGAAACGAAGGCTAATGTTAATGTTCGCACGAAGGCAT
TGCTCACACCTACCCACGACCTTACAGTAGTTTGACCGGGTTCGCTCGGG
CATGCTTGGCACTTCCTCGCCACGTACCGACGAAGACAGACTGACCCTGC
TAGCCTCCAGTGGTACTACTGTAGTAGGCTGATAGAATACCACGTTACGT
CATGCTACTTTTATTACTCTAACTCTACGCGACAGTTGAGGTTCCAACGA
TTTGACTCCACGATGGTTAGTTGAGACCTCAAAGATCAATTTCCTTCTCG
AAGGAGCGCTGGTGTTCTGAAACAGCCTGACCATCACCTTCTTAGAGCGT
GAGCGTTTTGAAACAACCGGACCATGGCCAGGATAAAGAACGCTCCCATG
AAGGGGTTCCAGACAACATCCTGCTATGTTGACAAATTTTGAAAACAAAC
GCAACAGCGCCAGAAAATGAATGCACAAGAGACACACAAGACCAGTCGGA
AGGCATCGCAAAAAAACAAATCCAAAGTTACAGGGCGGCAGTAGAGGCTG
CTCAAACCATGCCTTTCGGGCGTCTATCTCCACACGCCTCCTTTGAAACC
AAGATAAAATTCACGCCATTCTCAATTCAAGTCTAAAGAGCCAAAACGGA
AGGCGCTCAAACAAAGCCGGTGTTGCTAAAAACCTGGTCCGTTGTACTAT
TATAATTTCACTAGAGGACACCCTATAGCAGCGGGAGGGGGGTGTTGGCA
CGCTCAGATCTTCTTCTGTGGTGGTGATATCGAGGGTCGTAGTGGTGGCC
CACACTCTCCGCACATCTCCGCAAATTAGACCGTCACCCAATGTCTTGTA
CTGCTCGTGCTCGCCGCCACTGAACCCAATCTCCTGAACTGCGGGTTTAC
AGGAGTAGCTGGCGCCACTAGCTCCTGTTGACGACCCGTAGTTGAGGGGG
TTGCGGTCCGTGGTGGTGAGCACGACTGTGACAAATGTTGGGTGTCGCTT
GGTTCCGGCGCAGATTCGGACTGTTCTCAGAGGCTTCTGCGACCTTCGAT
TTTTCCGCCCCAGTAGCAACCCTGGACGTGCCAGCACGCACGACGCCTCT
TGATGGCATCCTCTACTGTTTGTCTAGCACAACGCACCAGGTTCCTCCGG
CGGGAAGGTTGTTTTCTTTCTTTGTATGGGTATAAAGTATAAGAGAAAAG
CCAGCGTGAAAATTCCTTGTCTGGGTCCCCTGAAGTCGATAGAAGACAAA
AACAAAACACGACCGAGGCCCTCACCCCACGACGAAACCTCTCCCCCTGT
TTTTGGAAACGCGTCTTTTTCTTCTTTTTCGTCATGGTCCAGTCTCAGCT
GCGGTCCCTGTCTTCGGGCCTGGATGCCCATGGTGGGGGTGTGGAGGAGG
CAGTGAGGGGGGTCGGTTGGGACGGCTGGCGCGAAGAGGGAGGCGCTCTT
TCGCCGGAAGGCACACAGGTTCGGGCGGGGGCGTGTTGTAGGGGGCGTAA
AAAAGCGCCGGCAGGCGGACAAGGAAGGGGACAGACGGGCATAATGGCAT
AACAGACAGGCAGACGCAAAGAGTCGGCACGATTTCGGCCACTGCAGTGC
CCGCCTGCGTTCCTTAGTTTCCATCCTCCTAGATCCCAGCAGTCACTCAC
GGCATGCGTTTATACCCACAGCAGCAATCGAACACTCCACCATCCCGTGG
GGGCATGCTAACGTCCACCCCGCACCCTCTACGGGACCCCATCTCTCTCT
CCGTTTGACTCCTCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGCCACACGGGCGCCCGGGTGGTGGCGNNNNNNNNNNAAG
TTTCGGGGGGATGGGATTTCAAACTTTTGCTCTTCCGCTCCCCCCCCCCG
GGCCCCCCCCCCCCCCCCCCTTTGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACGAGGCAGATGCGTGACATGCTCGAGAACGTGGGCGTTCGACGG
CTGGGGCCAGCGGAGGCCTCCATCCTCCTGGATAAGCGGCTCAAGGGAGA
CCGCCTTGCGGTGCTGGGGTACCTCTCCGCTGCCGCCGGCGAGAA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:309..4553+

>mRNA_E_fasciculatus_S2_contig985.17854.1 ID=mRNA_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:309..4553+ (Ectocarpus fasciculatus EfasUO2)
TCCTGCCGCGATGGTTTCCTGTGGCGCACGAGGTCGTACCTGCGCGCGTG
GGACAGGGGTATCGCCGTCGTCGTGCGCGTCTCCTCCTCGGCGGCGGCGA
CGGCTTCTTCGGCCCTGCCCGGTGGTCCGTCGTCATCGTCGTCGTTAGCA
GCAGCCGAACCCTCGGGGCGTCTTTGCGAGGGGGTGGAGCTGCTCGAGAC
GGCCTTGGGAGTGGCTGAAGGGAGTCTCCCCCCGGCCCAGTTCCAGCAGT
TCTGGACGGCACTGGCGAGCGAGGTGGACCTGACGCTCGTAAAGCAGATC
GTCGCCCGCAGGGTGGAGATGACCCAGGACGAGGGGCTACAGCTGTTGGC
GGACCTGAAGGTGCTGATGGGGCCCTTCGACTCCCTCACGCGGCGCCGGC
CGGAGAGACACTTCCCGGCCTTAGCCGAGGCGGCGGTGCTGCTGTCGCTG
GAAAAGTCTCAGCTGCGGTCCCTGTCTTCGGGCCTGGATGCCCATGGTGG
GGGTGTGGAGGAGGCAGTGAGGGGGGTCGGTTGGGACGGCTGGCGCGAAG
AGGGAGGCGCTCTTTCGCCGGAAGGCACACAGATGCGTGACATGCTCGAG
AACGTGGGCGTTCGACGGCTGGGGCCAGCGGAGGCCTCCATCCTCCTGGA
TAAGCGGCTCAAGGGAGACCGCCTTGCGGTGCTGGGGTACCTCTCCGCTG
CCGCCGGCGAG