mRNA_E_fasciculatus_S2_contig9841.17848.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9841.17848.1
Unique NamemRNA_E_fasciculatus_S2_contig9841.17848.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.130e-36
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 MRAYACLAALVATKVASHPLCVIDERQPDYDQVLTFCDNSIAATGACCTAXXXXXDDEEAQVVIDFNAATPVGEELTGECSDLYKQVMC 267
            MR++ACLAALVAT+VASHPLC ID++  DYDQVLTFCDNSIA++GACCT      DDEEAQVV+DFNA TPVGEELTG+C DLYKQV+C
Sbjct:    2 MRSFACLAALVATQVASHPLCFIDDKPTDYDQVLTFCDNSIASSGACCT------DDEEAQVVVDFNAVTPVGEELTGDCPDLYKQVVC 84          
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G959_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.690e-33
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 MRAYACLAALVATKV-ASHPLCVIDERQPDYDQVLTFCDNSIAATGACCTAXXXXXDDEEAQVVIDFNAATPVGEELTGECSDLYKQVM 264
            MR +ACLAALV TKV +SHPLC  D+RQPDYDQVLTFCDNSI + GACCT      DDEEA V+ +F+A TP G ELTG+CSDLYKQV+
Sbjct:    2 MRFFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSITSYGACCT------DDEEALVMANFSAVTPEGVELTGDCSDLYKQVV 84          
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Match: Glucose (sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 9.870e-28
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 MRAYACLAALVATKVA-SHPLCVIDERQPDYDQVLTFCDNSIAATGACCTAXXXXXDDEEAQVVIDFNAATPVGEELTGECSDLYKQVMCG 270
            MRA+ACLAALV  KV  SHPLC  D+R  DY++VLTFCD SIAA GACCT      DDEE QV+ DF+  TP G ELTG+CS+LYK+V+CG
Sbjct:    2 MRAFACLAALVGIKVVTSHPLCFFDDRPTDYNEVLTFCDTSIAAYGACCT------DDEEVQVMKDFSGVTPEGVELTGDCSNLYKEVVCG 86          
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K353_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.880e-27
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 MRAYACLAALVATKVASHPLCVIDERQPDYDQVLTFCDNSIAATGACCTAXXXXXDDEEAQVVIDFNAATPVGEELTGECSDLYKQ 258
            MRAYACLAAL ATKVA+HPLC  D+R  DYDQVLTFCDNSIA +GACCT      D+EE QV  +F+AA   G   + EC+ LYK+
Sbjct:    1 MRAYACLAALAATKVAAHPLCYFDDRPTDYDQVLTFCDNSIAMSGACCT------DEEEGQVEANFDAAFAEGVVPSSECAALYKE 80          
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Match: Glucose (sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.520e-25
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 MRAYACLAALVATKVASHPLCVIDERQPDYDQVLTFCDNSIAATGACCTAXXXXXDDEEAQVVIDFNAATPVGEELTGECSDLYKQVMCGL 273
            MRAYACLAAL ATKVA+HPLC ID++  DYDQVLT+CDNSIA +GACCT      ++EE  V  +FNAA  VG   +  C+ LYKQV+CG+
Sbjct:    1 MRAYACLAALAATKVAAHPLCFIDDKPTDYDQVLTYCDNSIAMSGACCT------NEEEDIVEANFNAAFGVGVVPSTACAALYKQVVCGV 85          
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.160e-11
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   19 LAALVATKVASHPLCVIDERQPDYDQVLTFCDNSIAATGACCTAXXXXXDDEEAQVVIDFNAATPVGEELTGECSDLYKQVMCGLTNKLDG 291
            L AL+ T  ASHPLC +D+R  D D++L FC    A +GACCT      D EEA V +   A   VG  LTG+C DLYKQV+CG+     G
Sbjct:   15 LGALI-TLCASHPLCYVDDRPTDPDEILEFCPE--AQSGACCT------DAEEALVQLRHEA---VGN-LTGDCDDLYKQVVCGVCGSYSG 92          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9841.17848.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized1.130e-3676.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.690e-3369.66protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Glucose9.870e-2864.84sorbosone dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
Uncharacterized7.880e-2762.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Glucose3.520e-2561.54sorbosone dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
WSC1.160e-1148.35domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9841contigE_fasciculatus_S2_contig9841:1097..1541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score142.5
Seed ortholog evalue1e-31
Seed eggNOG ortholog2880.D7G957
Model size294
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003090.1
EC1.1.3.9,1.2.3.15,3.2.1.59
Cds size294
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.804641-CDS-E_fasciculatus_S2_contig9841:1096..11921696842627.804641-CDS-E_fasciculatus_S2_contig9841:1096..1192Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9841 1097..1192 +
1696842627.8197517-CDS-E_fasciculatus_S2_contig9841:1343..15411696842627.8197517-CDS-E_fasciculatus_S2_contig9841:1343..1541Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9841 1344..1541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9841.17848.1prot_E_fasciculatus_S2_contig9841.17848.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9841 1097..1541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9841.17848.1

>prot_E_fasciculatus_S2_contig9841.17848.1 ID=prot_E_fasciculatus_S2_contig9841.17848.1|Name=mRNA_E_fasciculatus_S2_contig9841.17848.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
MRAYACLAALVATKVASHPLCVIDERQPDYDQVLTFCDNSIAATGACCTA
GACCTDDEEAQVVIDFNAATPVGEELTGECSDLYKQVMCGLTNKLDG*
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mRNA from alignment at E_fasciculatus_S2_contig9841:1097..1541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9841.17848.1 ID=mRNA_E_fasciculatus_S2_contig9841.17848.1|Name=mRNA_E_fasciculatus_S2_contig9841.17848.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=445bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9841:1097..1541+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTGCCTACGCGTGTCTAGCCGCGCTGGTCGCCACCAAGGTGGCGTC GCACCCTCTCTGCGTTATCGATGAGAGACAGCCGGATTATGACCAGGTGA GTTCGTATTGCCTCTAATTGCTTGGGTATTCGACAGTCACCAGTGTGAGC AAAGTTGTAGACACTATATCCCTTCGAGATTATTACCACGACCACAGCAG GTTCATGCTACAACCTTCCATTTTTCCGTCGGCACGCACAACAACAGGTC TTGACATTCTGCGACAATTCGATCGCGGCGACCGGTGCTTGCTGTACGGC CGGTGCTTGCTGCACGGACGATGAGGAAGCACAAGTGGTGATCGACTTCA ACGCTGCGACGCCTGTAGGGGAGGAGCTCACTGGCGAGTGCTCTGATCTC TACAAGCAGGTGATGTGTGGGTTGACAAATAAATTGGATGGTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9841:1097..1541+

>mRNA_E_fasciculatus_S2_contig9841.17848.1 ID=mRNA_E_fasciculatus_S2_contig9841.17848.1|Name=mRNA_E_fasciculatus_S2_contig9841.17848.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9841:1097..1541+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTGCCTACGCGTGTCTAGCCGCGCTGGTCGCCACCAAGGTGGCGTC
GCACCCTCTCTGCGTTATCGATGAGAGACAGCCGGATTATGACCAGGTCT
TGACATTCTGCGACAATTCGATCGCGGCGACCGGTGCTTGCTGTACGGCC
GGTGCTTGCTGCACGGACGATGAGGAAGCACAAGTGGTGATCGACTTCAA
CGCTGCGACGCCTGTAGGGGAGGAGCTCACTGGCGAGTGCTCTGATCTCT
ACAAGCAGGTGATGTGTGGGTTGACAAATAAATTGGATGGTTGA
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