mRNA_E_fasciculatus_S2_contig984.17845.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: P4Hc (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 3.500e-147 Identity = 255/450 (56.67%), Postives = 258/450 (57.33%), Query Frame = 1 Query: 334 SVAATSALQFAQLGQQLLPQQQLHGFGEIGSSVAPAALVPQAQLAGIYPSASLTTTTSVDTAVSTHVVDGGVAXXXXXXXXXXXXXXXXLSDIGGAVVPLPAANSGPTFTFNGXXXXXXXVEPLAGPVFQPGFNPTALQNQQQPAPVFTTPSSTRFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVQQQXXXXXXXXXXXXXQLQPGTPAASITAAFTPFPAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 1683
SV ATSALQFAQLGQQLLP QQLHGFG IGSSVAPAALVP AQLAGI+P+ASLTT TSVDT LYPGLRNL ETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVM LTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQP+K GMAVVFFPATLDG LDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI
Sbjct: 28 SVPATSALQFAQLGQQLLPHQQLHGFGGIGSSVAPAALVPPAQLAGIHPTASLTTATSVDTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRK-GMAVVFFPATLDGVLDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 294
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ8_9PHAE) HSP 1 Score: 362 bits (928), Expect = 6.420e-117 Identity = 261/356 (73.31%), Postives = 272/356 (76.40%), Query Frame = 1 Query: 7 GSSSDKSGTASHAALQQVGVYSGSYAAVPGVFGGQTL--QHGGGSTASQPSDRPPTTAPTQPPHAASSINGTANHMVLDNAPSLHHPXXXXXXXXXXXXXXXXXXXXARQGSVAATSALQFAQLGQQLLPQQQLHGFGEIGSSVAPAALVPQAQLAGIYPSASLTTTTSVDTAVSTHVVDGGVAXXXXXXXXXXXXXXXXLSDIGGAVVPLPAANSGPTFTFNGXXXXXXXVEPLAGPVFQPGFNPTALQNQQQPAPVFTTPSSTRFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVQQQXXXXXXXXXXXXXQLQPGTPAASITAAFTPFPAQSFLQLNPL 1068
G SD +GT SH QQ GVYSGSYA VPGVFGGQT+ QHGGGS PS P AP+QPP AA SI TANHMVLDN PSL HP +Q S+AATS LQFAQLGQQLLPQQQLHGF IGSSVAPAALVP AQLAGI+P+ASLT+TTSVDTAVSTHVVD GVA LSDIGGAVVPLP ANSGPT+TFNG XXXX +PL PVFQPGFNPTALQNQQQPAPVFTTPSST FPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPV QQ XXXXXXXXXXXX PGTPAASITAAF PFP QSFLQLNP+
Sbjct: 19 GGRSDTNGTVSHVTSQQAGVYSGSYA-VPGVFGGQTVTSQHGGGSAPRPPSVSAPPAAPSQPPQAAGSIKSTANHMVLDNDPSLDHPPAVTSVAWGGATIASPAVLFGQQESIAATSTLQFAQLGQQLLPQQQLHGFRGIGSSVAPAALVPPAQLAGIHPTASLTSTTSVDTAVSTHVVDCGVAGGGAVTSVLQQHPPPPLSDIGGAVVPLPVANSGPTYTFNGGGXXXXVSDPLTRPVFQPGFNPTALQNQQQPAPVFTTPSSTGFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQQXXXXXXXXXXXXX--PGTPAASITAAFAPFPPQSFLQLNPV 371
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA) HSP 1 Score: 279 bits (714), Expect = 1.980e-87 Identity = 138/216 (63.89%), Postives = 162/216 (75.00%), Query Frame = 1 Query: 1036 PAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 1683
P + +L LNP YPGL + PP++ V F S ECD LI A +M +PVVGAG GEVS SRTSS+C+LAREDLPT+C KV LTG P+EHLELPQVGRY + Y H+DAFD ++ DGRRFAQNGGQRV TVLVYLNDV GGCT+F +LG+ +QPKK G A+VFFPA+LDG LD LHAAEPA+D KWVSQIWIRQ AY+G + RI I
Sbjct: 27 PPRQYLPLNPAYPGLTAVHTDPPVFTVAIFLSEAECDDLINSAQGHMTPAPVVGAGNGEVSVSRTSSTCYLAREDLPTICTKVCALTGCPVEHLELPQVGRYRGGEFYKAHYDAFDTSSPDGRRFAQNGGQRVATVLVYLNDVARGGCTSFSKLGLSIQPKK-GTALVFFPASLDGMLDQHYLHAAEPALDLKWVSQIWIRQKAYNGLASVRIAPI 241
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA) HSP 1 Score: 273 bits (698), Expect = 2.250e-85 Identity = 131/200 (65.50%), Postives = 153/200 (76.50%), Query Frame = 1 Query: 1075 GLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
G+R L PP YVV+ F S EC+ LI A +M SPVVG G GE+S SRTS+SC+ AREDLP++CHKV LTGKP +HLELPQVGRY +Q YA H DAFDL T+DG RFAQNGGQRV TVL+YLNDVP GG T+FP+LG+ V P++ GMAVVFFP+TLDG D LH AEPA+D K+VSQIWIRQG Y G PT R+
Sbjct: 16 GVRQLHGHPPFYVVEGFLSTQECEGLIRQADGFMCTSPVVGKGNGEISPSRTSTSCYFAREDLPSICHKVCMLTGKPADHLELPQVGRYLPTQFYAPHLDAFDLKTQDGMRFAQNGGQRVATVLIYLNDVPRGGNTSFPRLGLSVTPRR-GMAVVFFPSTLDGCADELALHTAEPAVDVKYVSQIWIRQGLYTGEPTRRL 214
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA) HSP 1 Score: 276 bits (706), Expect = 5.740e-84 Identity = 138/229 (60.26%), Postives = 166/229 (72.49%), Query Frame = 1 Query: 991 PGTPAASITAAFTPFPAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIP 1677
P A ++T P + +NP YPGLR L TPP++ VD+F S EC L+ +A + +PVVG GAGEVS SRTSS+C+LAREDLP KV LTGKPIEH ELPQVGRY+ SQ+Y H+DAFDL+ EDGRRFA NGGQR TVLVYLNDV GG T+FP L + VQP++ GMA+VFFPAT+DG LD LHAA PA+DTK+VSQ+WIRQG Y G P+ R+P
Sbjct: 158 PPESATALTVQERPLIPPVYNGVNPHYPGLRLLNATPPIFAVDNFLSPFECQFLMEVAQDSFGPAPVVGKGAGEVSPSRTSSTCYLAREDLPDYLRKVSLLTGKPIEHCELPQVGRYFPSQQYLQHFDAFDLSNEDGRRFASNGGQRTVTVLVYLNDVHQGGATSFPALNLDVQPRR-GMAIVFFPATVDGYLDKMALHAANPAVDTKYVSQVWIRQGEYKGQPSKRLP 385
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KY14_9STRA) HSP 1 Score: 275 bits (702), Expect = 5.270e-83 Identity = 134/223 (60.09%), Postives = 166/223 (74.44%), Query Frame = 1 Query: 1012 ITAAFTPFPAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPA 1680
+T P A + +NP YPGLR L +PP++ V++F S ECD LI A + +PVVG G+GE+S SRTSS+C+LAREDLP + KV LTGKPI+H ELPQVGRY SQ+Y H+DAFDL+TEDGRRFA NGGQR TVL+YLNDV GG T FP L + VQP + GMA++FFPAT+DG LD LHAA PA+DTK+VSQ+WIRQG+Y+G P+ R+PA
Sbjct: 175 LTVQDRPMTAPVYNGVNPHYPGLRVLHNSPPVFCVENFLSPHECDFLINAAHDSFGPAPVVGKGSGEISPSRTSSTCYLAREDLPDLMRKVTLLTGKPIDHCELPQVGRYMASQQYLQHYDAFDLSTEDGRRFASNGGQRTITVLIYLNDVHQGGATRFPALNLDVQPVR-GMALIFFPATIDGMLDQMSLHAALPAVDTKYVSQVWIRQGSYNGQPSKRLPA 396
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA87_9STRA) HSP 1 Score: 265 bits (678), Expect = 2.360e-81 Identity = 128/206 (62.14%), Postives = 157/206 (76.21%), Query Frame = 1 Query: 1057 LNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
+NP YPGL L +PP++ VD+F S ECD LIA + + +PVVG G GEVSE+RTSS+C+LAREDLP +K+M LTGKP+EH ELPQ+GRY SQKY H+DAFDL E GRRFA NGGQR TVL+YLNDV +GG T FP L ++V+P++ GMA+VFFPAT+DG LD LHAA PAIDTK+VSQ+WIRQG Y G P+ +
Sbjct: 55 VNPSYPGLHVLNSSPPVFCVDNFLSPEECDFLIASSLDSFAPAPVVGKGGGEVSETRTSSTCYLAREDLPLYMNKIMALTGKPLEHCELPQIGRYLPSQKYLQHFDAFDLGDEHGRRFASNGGQRTVTVLLYLNDVMNGGHTTFPSLNLEVKPRR-GMAIVFFPATIDGYLDKMALHAALPAIDTKFVSQVWIRQGNYEGQPSKHL 259
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I918_9STRA) HSP 1 Score: 268 bits (684), Expect = 3.940e-81 Identity = 134/213 (62.91%), Postives = 158/213 (74.18%), Query Frame = 1 Query: 1036 PAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
PA F +NP YPGLR L PP++ VDDF S ECD LI A + + +PVVG G GEVS++RTSS+CFLAREDLP KV LTGKP H ELPQVGRY SQ Y H+DAFDL T+DGRR A GGQR TVLVYLNDV +GG TAFP+L + V+PK+ G AVVFFPAT+DG LD R+LHAA PA+D K+VSQ+WIRQGA+ G P+ R+
Sbjct: 137 PAPVFNGVNPDYPGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGRYLQSQHYQQHYDAFDLGTDDGRRVASKGGQRTVTVLVYLNDVENGGETAFPELKLAVKPKR-GKAVVFFPATVDGYLDQRVLHAATPAVDVKYVSQVWIRQGAHDGVPSKRL 348
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7N8_9STRA) HSP 1 Score: 261 bits (668), Expect = 1.090e-80 Identity = 131/209 (62.68%), Postives = 155/209 (74.16%), Query Frame = 1 Query: 1048 FLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
F +NP PGLR L PP++ VDDF S ECD LI A + + +PVVG G GEVS++RTSS+CFLAREDLP KV LTGKP H ELPQVGRY SQ Y H+DAFDL T+DGRR A GGQR TVLVYLNDV +GG TAFP+L + V+PK+ G AVVFFPAT+DG LD R+LHAA PA+D K+VSQ+WIRQGA+ G P+ R+
Sbjct: 1 FNGVNPDSPGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGRYLQSQHYQQHYDAFDLGTDDGRRVASKGGQRTVTVLVYLNDVENGGETAFPELKLAVKPKR-GKAVVFFPATVDGYLDQRVLHAATPAVDVKYVSQVWIRQGAHDGVPSKRL 208
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: P4Hc (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHE4_FISSO) HSP 1 Score: 261 bits (666), Expect = 4.930e-80 Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 1 Query: 1057 LNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
+NP YPGLR L +PP++ V++F + ECD LI A + + +PVVG GAGE+S SRTSS+C+LAREDL + KV LTGKP EH ELPQVGRY+ +KY H+DAFDL+TEDGRRFA NGGQR TVL+YLNDV GG T FP L + +QP++ GMA+VFFPAT+DG LD LHAA PAIDTK+VSQ+WIRQ Y+G P+ R+
Sbjct: 9 VNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDALGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVSLLTGKPPEHCELPQVGRYFYQEKYLQHFDAFDLSTEDGRRFAANGGQRTVTVLIYLNDVMRGGATRFPALNLDIQPRR-GMALVFFPATVDGMLDKMALHAALPAIDTKFVSQVWIRQSIYNGQPSKRL 213 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig984.17845.1 >prot_E_fasciculatus_S2_contig984.17845.1 ID=prot_E_fasciculatus_S2_contig984.17845.1|Name=mRNA_E_fasciculatus_S2_contig984.17845.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=562bp MGGSSSDKSGTASHAALQQVGVYSGSYAAVPGVFGGQTLQHGGGSTASQPback to top mRNA from alignment at E_fasciculatus_S2_contig984:3898..9608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig984.17845.1 ID=mRNA_E_fasciculatus_S2_contig984.17845.1|Name=mRNA_E_fasciculatus_S2_contig984.17845.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig984:3898..9608- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig984:3898..9608- >mRNA_E_fasciculatus_S2_contig984.17845.1 ID=mRNA_E_fasciculatus_S2_contig984.17845.1|Name=mRNA_E_fasciculatus_S2_contig984.17845.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1686bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig984:3898..9608- (Ectocarpus fasciculatus EfasUO2)back to top |