mRNA_E_fasciculatus_S2_contig9836.17844.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9836.17844.1
Unique NamemRNA_E_fasciculatus_S2_contig9836.17844.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9836.17844.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY7_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 9.450e-91
Identity = 158/180 (87.78%), Postives = 160/180 (88.89%), Query Frame = 1 
Query:  220 GEDDQERGFVEKRVDELEQQEAAALAAALAAASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGK-QQCRSLEDAFQAAEGESARGGDAERSAEPPEVGLIIPAWAPPSPVFEAEVEAEAGATAATXXXXPPPVSTDDDLPDIPITVADTPMGSVG 756
            GE DQERGFVEKRVDELEQQEAAAL      ASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGK QQCRSLEDAFQAAEGESARGGDAERSAEPPEVGL+IPAWAPPSPVFE E E EAGATAA     P P+STD DLPDIPITVADTP  SVG
Sbjct:  103 GEGDQERGFVEKRVDELEQQEAAALXXXXXXASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGKLQQCRSLEDAFQAAEGESARGGDAERSAEPPEVGLVIPAWAPPSPVFEREEEVEAGATAAXSAAAPHPLSTDGDLPDIPITVADTPTESVG 282
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BLAST of mRNA_E_fasciculatus_S2_contig9836.17844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E6_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 4.420e-68
Identity = 152/196 (77.55%), Postives = 158/196 (80.61%), Query Frame = 1 
Query:  229 DQERG-----------FVEKRVDELEQQEAAALAAALAAASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGKQQCRSLEDAFQAAEGESARGGDAERSAE----PPEVGLIIPAWAPPSPVFEAEVEAEAGATAATXXXXPP----PVSTDDDLPDIPITVADTPMGSVGS 759
            DQERG           FVEK VDELEQQEAAALAAALAAASTLPS+SLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASER SEWHTAGAAAGK  CRSLEDAF AAEGESARGGDA+RSAE    PPE+GLIIPAWAPP PVFE E EAEAG     XXXX      P+S+D DLPDIPITVADT   S+GS
Sbjct:  420 DQERGCAEGWAGGLKKFVEKGVDELEQQEAAALAAALAAASTLPSYSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERGSEWHTAGAAAGK--CRSLEDAFHAAEGESARGGDAQRSAERSTEPPEMGLIIPAWAPPGPVFEREGEAEAGXXXXXXXXXXXXXXTPLSSDGDLPDIPITVADTSTESLGS 613
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9836.17844.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.450e-9187.78protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized4.420e-6877.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9836contigE_fasciculatus_S2_contig9836:3362..5297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size780
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005090.1
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.4245842-CDS-E_fasciculatus_S2_contig9836:3361..36551696842627.4245842-CDS-E_fasciculatus_S2_contig9836:3361..3655Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9836 3362..3655 -
1696842627.4370756-CDS-E_fasciculatus_S2_contig9836:4569..48131696842627.4370756-CDS-E_fasciculatus_S2_contig9836:4569..4813Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9836 4570..4813 -
1696842627.4466736-CDS-E_fasciculatus_S2_contig9836:5055..52971696842627.4466736-CDS-E_fasciculatus_S2_contig9836:5055..5297Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9836 5056..5297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9836.17844.1prot_E_fasciculatus_S2_contig9836.17844.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9836 3362..5297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9836.17844.1

>prot_E_fasciculatus_S2_contig9836.17844.1 ID=prot_E_fasciculatus_S2_contig9836.17844.1|Name=mRNA_E_fasciculatus_S2_contig9836.17844.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=260bp
GEEDASLSGSSKGEKEDDRTTSVEMETEKTGGRLERKGEDEGEMERQRQL
EARAKTAEAAAAERSRAAAAATEGEDDQERGFVEKRVDELEQQEAAALAA
ALAAASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERD
SEWHTAGAAAGKQQCRSLEDAFQAAEGESARGGDAERSAEPPEVGLIIPA
WAPPSPVFEAEVEAEAGATAATSAAAPPPVSTDDDLPDIPITVADTPMGS
VGSSTESAGS
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mRNA from alignment at E_fasciculatus_S2_contig9836:3362..5297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9836.17844.1 ID=mRNA_E_fasciculatus_S2_contig9836.17844.1|Name=mRNA_E_fasciculatus_S2_contig9836.17844.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1936bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9836:3362..5297- (Ectocarpus fasciculatus EfasUO2)
GGCGAAGAAGACGCGTCGCTTTCGGGTTCGTCGAAGGGAGAGAAGGAAGA
CGACAGAACAACTTCTGTGGAAATGGAGACAGAGAAGACCGGGGGGCGCT
TGGAGAGGAAGGGGGAGGACGAGGGAGAGATGGAAAGGCAGCGGCAGTTG
GAGGCTCGGGCGAAGACGGCGGAGGCGGCGGCGGCGGAGAGATCGAGGGC
TGCTGCTGCTGCTACCGAGGGAGAGGACGACCAAGAACGCGGGTGCGCTG
AGGGATGGGAGGGGGGTTGAAGAGGTTCTTTGGGGGGGCTTGCGTTCCCG
CCACCGCCGGGGGCTGTTTTTTTTGTTTTTTTTTGCATGGCCCGACAAAA
GTGGTACAATCATGCGTGTGTCGACACAACTTACCGTAGGGGCTAACGGC
CCGTTCAACTCGCGGTCCTGCTCCTCTTTTCTTTTTGGTCTCGTGATAAC
CACGAAACACGGCCTATATGTTAATCCAACACAGGTTTGTCGAGAAGCGG
GTCGACGAGCTTGAGCAGCAGGAGGCCGCAGCCCTCGCCGCCGCTCTCGC
GGCGGCCTCGACCCTCCCCTCCTTCTCGCTGCCCCCCCGCCGCTACACCG
CCGGCGTCATCTCCCCGAGGCTGGGCAGCCCGACGTACCTCGCGTCGAAG
GGCTTCGGGAGCTTCAGTGGGATGAGCGCCTCCGAGCGGGACTCGGAGTG
GCACACGGCGGGCGCGGCGGCTGGGAAGGTAAAGTGGTGATGTCTGTCCG
GTTCTCGTATGAATACCTGCAATTTTTGTTTTTTTGTGGCCTCAGAAAGT
GAGGTGCGGTCGGTCCACGGATTGTCTTTTCGTTGCTCGGGGAGAAAAGA
GAAACAGGGTCGGGTCAGTTGACGACGTTTCCCTCCGCCCGTACGTGATG
GGCGAGTAACGCGTGCGGTCACGCATGTAAGGCTTGTGGTTGCCTCCGAG
AAATTGCACGGCATGCACACATTTGAGTTGCTTCCTATGCAAGCGCCCCG
TGTTGAGTTCCTTTCGGGGATTTAGTGATTCTTGCTCCCTCGGCCACCTT
TCAAGAACCTACCCCGCATGGCACGCCGAAACGACGCCATTGCTGCCCCG
TGTTGGGATTGGTGTGATGTGCGGAGTGAGTGACTTGGCGCCAGATGTTC
TTCGACAGATGCTGTGGAATCAACGTCGTTCCTTACTCGTAGGTGTCAAT
CTGTGGGCTGAAGTAAAAGACTCCGTGCGTAAATGTCTGAGAAAGAGCGA
ATTAATATAAAAACGATGGCTGCCCCGGCCGATTTCCTTGCTCTCTGTAA
AACCCAGAATCCCCGTATTCCTGGGGGGCGAGCCGCGTGTTTAGGGGGAA
ATAGCATCCGGTAAAGGCGCTTGACGAACCATTTTAACCTCCATCGAATT
CAACGAGTACATGGCCCCATGAAGCACAAACATCAAAGCCTCTACATACC
TTCCACCGCGTGGCTCCTCTTGCTGTACGGAGCGGGTAGAGAGTCACGGG
TTACCTTTCGACGCGTGCGTCTCCGGTGAAGCAAGCCATTCGAAATCCTT
CCACCAATTCATTCCCGGTTACCTAACTGCACCCGTCCCCCCCTACGCAC
CCCGTACGGGCAAAACAACAACGGGCCCTTGCTCGGCAACAGCAGCAGTG
CCGATCCCTGGAAGACGCTTTCCAAGCAGCGGAAGGAGAAAGTGCGAGGG
GGGGCGACGCGGAACGGTCTGCGGAACCACCAGAGGTCGGGCTCATCATC
CCAGCCTGGGCCCCGCCCAGCCCCGTTTTCGAGGCGGAGGTGGAGGCGGA
GGCGGGGGCGACGGCAGCTACATCTGCAGCTGCACCACCCCCCGTTAGTA
CCGACGACGATCTGCCGGACATCCCCATCACGGTCGCGGATACGCCGATG
GGGTCGGTTGGATCGTCGACGGAATCGGCGGGTTCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9836:3362..5297-

>mRNA_E_fasciculatus_S2_contig9836.17844.1 ID=mRNA_E_fasciculatus_S2_contig9836.17844.1|Name=mRNA_E_fasciculatus_S2_contig9836.17844.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9836:3362..5297- (Ectocarpus fasciculatus EfasUO2)
GGCGAAGAAGACGCGTCGCTTTCGGGTTCGTCGAAGGGAGAGAAGGAAGA
CGACAGAACAACTTCTGTGGAAATGGAGACAGAGAAGACCGGGGGGCGCT
TGGAGAGGAAGGGGGAGGACGAGGGAGAGATGGAAAGGCAGCGGCAGTTG
GAGGCTCGGGCGAAGACGGCGGAGGCGGCGGCGGCGGAGAGATCGAGGGC
TGCTGCTGCTGCTACCGAGGGAGAGGACGACCAAGAACGCGGGTTTGTCG
AGAAGCGGGTCGACGAGCTTGAGCAGCAGGAGGCCGCAGCCCTCGCCGCC
GCTCTCGCGGCGGCCTCGACCCTCCCCTCCTTCTCGCTGCCCCCCCGCCG
CTACACCGCCGGCGTCATCTCCCCGAGGCTGGGCAGCCCGACGTACCTCG
CGTCGAAGGGCTTCGGGAGCTTCAGTGGGATGAGCGCCTCCGAGCGGGAC
TCGGAGTGGCACACGGCGGGCGCGGCGGCTGGGAAGCAGCAGTGCCGATC
CCTGGAAGACGCTTTCCAAGCAGCGGAAGGAGAAAGTGCGAGGGGGGGCG
ACGCGGAACGGTCTGCGGAACCACCAGAGGTCGGGCTCATCATCCCAGCC
TGGGCCCCGCCCAGCCCCGTTTTCGAGGCGGAGGTGGAGGCGGAGGCGGG
GGCGACGGCAGCTACATCTGCAGCTGCACCACCCCCCGTTAGTACCGACG
ACGATCTGCCGGACATCCCCATCACGGTCGCGGATACGCCGATGGGGTCG
GTTGGATCGTCGACGGAATCGGCGGGTTCT
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