mRNA_E_fasciculatus_S2_contig983.17840.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig983.17840.1
Unique NamemRNA_E_fasciculatus_S2_contig983.17840.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: PUB (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.530e-16
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   10 RLVSSSCDRLEDSTIAIRYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRE 198
            R V+ S    ED T A++YL N+  HP E KYR +KK N RF +EVWL PGIR  F AIGFRE
Sbjct:   12 RCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFRE 74          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: PUB (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.880e-15
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   10 RLVSSSCDRLEDSTIAIRYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRE 198
            R V+ S  + EDST+ ++YL NV+NHP + KYR +K  N++F +EVWL  G+R  FLA+GFR+
Sbjct:   34 RCVALSRRQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRK 96          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQI1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.410e-6
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   58 IRYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRED 201
            ++YL N++ HP E KYRKI+  N++F +EVW     R  FLA GF+E+
Sbjct:  376 LKYLTNILRHPSERKYRKIRTANKKFYAEVW-NTAARGLFLAAGFKEE 422          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: UBX (domain-containing protein 6-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DWD2_9ASCI)

HSP 1 Score: 52.0 bits (123), Expect = 6.640e-6
Identity = 25/71 (35.21%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    4 LARLVSSSCDRLEDSTIAI-RYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFREDREAS 213
            + ++++ + D++E +T  I +YL NV+ HP E KYRKI+K+NR F+ +V    G      A GF+   + +
Sbjct:  148 MIKMLNKNPDKIEAATATINKYLSNVMAHPDEEKYRKIRKNNRVFSEKVSSVEGCEEFLEACGFKRSLDGT 218          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFY3_SALR5)

HSP 1 Score: 52.0 bits (123), Expect = 6.790e-6
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   61 RYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFREDRE 207
            + L N+V+HP +PKYR+++K+N     +++  PG   A LAIGFRE  E
Sbjct:  241 KLLGNLVDHPDDPKYRRVRKENAALQRDLFGHPGGVEAVLAIGFRESEE 289          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: Putative (ubiquitin regulatory protein n=2 Tax=Phlebotominae TaxID=7198 RepID=A0A7G3B0L4_LUTLO)

HSP 1 Score: 51.6 bits (122), Expect = 9.110e-6
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    7 ARLVSSSCDRLEDSTIAI----RYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRE 198
            A L+  +C+  E +   +    +YLEN++NHP E KYRKI+  NR F+ +V    G      A GF E
Sbjct:  158 ACLIIQNCNTKEKADACVETLTKYLENIINHPDEEKYRKIRMSNRIFSEKVRNVEGSMEFLFAAGFEE 225          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: CSON009594 (protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336M5Y8_CULSO)

HSP 1 Score: 51.6 bits (122), Expect = 9.130e-6
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1
Query:   58 IRYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRE 198
            IRY+EN++NHP E KYRKI+  NR F  +V    G      AIGF E
Sbjct:  197 IRYIENIINHPDEEKYRKIRMSNRIFQEKVEHVEGALDFLRAIGFTE 243          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: UBX (domain-containing protein 6-like n=2 Tax=Ciona intestinalis TaxID=7719 RepID=H2XTR2_CIOIN)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 23/66 (34.85%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    4 LARLVSSSCDRLEDST-IAIRYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRE 198
            + + +++S D+++ +  I IRY++N++ HPGE KY+KI+K+N+ F  +V    G      A GF++
Sbjct:  159 MMKTLNTSQDKVQAAVDIIIRYIDNIIAHPGEEKYQKIRKNNKVFTEKVASVEGAEEFLEAAGFQK 224          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HJY3_9CRYP)

HSP 1 Score: 51.2 bits (121), Expect = 1.280e-5
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    4 LARLVSSSCDRLEDSTIAIRYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFREDRE 207
            L R   S  + +  +   + ++ N VNHP EPKYRKI+K N  F + +  + G   A +A GF+E  E
Sbjct:  414 LKRSCGSDSEFISATKTLLTFISNCVNHPTEPKYRKIRKGNTTFQARLGNKQGGVEALVAFGFKEVSE 481          
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Match: UBX (domain-containing protein 6 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D431CE)

HSP 1 Score: 50.4 bits (119), Expect = 2.340e-5
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1
Query:   13 LVSSSCDRLEDSTIAI----RYLENVVNHPGEPKYRKIKKDNRRFASEVWLQPGIRTAFLAIGFRE 198
            L+  +C+  E ST  I    +YL+N++ HP + KYRKI++ NR F  +V    G     LA GF E
Sbjct:  167 LIILNCNTKEKSTACIETLSKYLQNIIQHPDDEKYRKIRQSNRIFCEKVQPCEGALDFLLAAGFIE 232          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig983.17840.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
PUB4.530e-1657.14domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
PUB4.880e-1550.79domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical1.410e-647.92protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
UBX6.640e-635.21domain-containing protein 6-like n=1 Tax=Phallusia... [more]
Uncharacterized6.790e-644.90protein n=1 Tax=Salpingoeca rosetta (strain ATCC 5... [more]
Putative9.110e-638.24ubiquitin regulatory protein n=2 Tax=Phlebotominae... [more]
CSON0095949.130e-651.06protein n=1 Tax=Culicoides sonorensis TaxID=179676... [more]
UBX1.240e-534.85domain-containing protein 6-like n=2 Tax=Ciona int... [more]
Hypothetical1.280e-536.76protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S... [more]
UBX2.340e-539.39domain-containing protein 6 n=1 Tax=Contarinia nas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig983contigE_fasciculatus_S2_contig983:24438..25345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.0887916-CDS-E_fasciculatus_S2_contig983:24437..245431696842627.0887916-CDS-E_fasciculatus_S2_contig983:24437..24543Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 24438..24543 -
1696842627.105137-CDS-E_fasciculatus_S2_contig983:25217..253451696842627.105137-CDS-E_fasciculatus_S2_contig983:25217..25345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 25218..25345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig983.17840.1prot_E_fasciculatus_S2_contig983.17840.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig983 24438..25345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig983.17840.1

>prot_E_fasciculatus_S2_contig983.17840.1 ID=prot_E_fasciculatus_S2_contig983.17840.1|Name=mRNA_E_fasciculatus_S2_contig983.17840.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
SLARLVSSSCDRLEDSTIAIRYLENVVNHPGEPKYRKIKKDNRRFASEVW
LQPGIRTAFLAIGFREDREASAKDRSS*
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mRNA from alignment at E_fasciculatus_S2_contig983:24438..25345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig983.17840.1 ID=mRNA_E_fasciculatus_S2_contig983.17840.1|Name=mRNA_E_fasciculatus_S2_contig983.17840.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=908bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:24438..25345- (Ectocarpus fasciculatus EfasUO2)
TCTCTTGCCCGACTCGTCTCGTCGTCGTGTGACAGGTTAGAGGACAGCAC CATCGCGATCCGATACCTCGAGAATGTCGTCAATCACCCAGGCGAACCAA AGTATCGAAAGATAAAGAAGGACAATCGGTGCGTGGGAGAGCTCAGTTCT GGGTTTCGTCGTTACGAAATGATTATTTTGGGCGGGCTGTACTATTTTTA GGAGTAAGATCATCCCGTAAACAACAGCAGGAACGCTCCACTTTGATCTA TGTACTTCGTACATGCCTCTTGTTGTTGTTGGTGCCAAAGAATTCGTGCG CACGCAACAAACTAGTTTTACGGTCGAGGGACGGGAATGACTTGATCCTT CTCACGATAATAACCATGGCAGGGACCGCGTAAGATGGAAAAAAAAATAG GCTTTTTGTACTCCTACTGCTCTGCGTGCCTGCATTCTGTGTTCCCCGAC CGACTGTGTACTACAACAGTCCAGAGAATAACACTAACTGACCTCATCCA CACGACCAGACGCCTTCCTTTCTTCCGTAGACAAGACGCCTCACGATGGG TTCATGATGTTATGTGACCTGTACTTTTGTTTCTACCATTCCTCGCCTCT CTAAGTCTATTATTACTACTTTGGACTGGACAGGAAAGACATGCACCAAA CAAAGTATCTAAAAAGTTTGCTGCCCCCTTTTTGCATATCAATACGTTGA CGTGTGCTTGTCGACTCGTCCTGGCTCGCACTGTAGTGCTGGCGTTGACA TATTGCAGACATTTACTATTTGTATTTTTTTGTTTCAACACGCTTGAGGC AGGAGGTTCGCGAGCGAGGTCTGGCTCCAGCCGGGCATTAGGACGGCCTT CCTCGCCATTGGTTTTCGAGAGGACCGCGAGGCAAGTGCAAAGGATCGTT CATCATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig983:24438..25345-

>mRNA_E_fasciculatus_S2_contig983.17840.1 ID=mRNA_E_fasciculatus_S2_contig983.17840.1|Name=mRNA_E_fasciculatus_S2_contig983.17840.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:24438..25345- (Ectocarpus fasciculatus EfasUO2)
TCTCTTGCCCGACTCGTCTCGTCGTCGTGTGACAGGTTAGAGGACAGCAC
CATCGCGATCCGATACCTCGAGAATGTCGTCAATCACCCAGGCGAACCAA
AGTATCGAAAGATAAAGAAGGACAATCGGAGGTTCGCGAGCGAGGTCTGG
CTCCAGCCGGGCATTAGGACGGCCTTCCTCGCCATTGGTTTTCGAGAGGA
CCGCGAGGCAAGTGCAAAGGATCGTTCATCATAA
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