mRNA_E_fasciculatus_S2_contig983.17838.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig983.17838.1
Unique NamemRNA_E_fasciculatus_S2_contig983.17838.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig983.17838.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig983contigE_fasciculatus_S2_contig983:20291..21282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842626.9622862-CDS-E_fasciculatus_S2_contig983:20290..203241696842626.9622862-CDS-E_fasciculatus_S2_contig983:20290..20324Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 20291..20324 -
1696842626.9737227-CDS-E_fasciculatus_S2_contig983:21187..212821696842626.9737227-CDS-E_fasciculatus_S2_contig983:21187..21282Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 21188..21282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig983.17838.1prot_E_fasciculatus_S2_contig983.17838.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig983 20291..21282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig983.17838.1

>prot_E_fasciculatus_S2_contig983.17838.1 ID=prot_E_fasciculatus_S2_contig983.17838.1|Name=mRNA_E_fasciculatus_S2_contig983.17838.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=43bp
LVLYAREERLAEQSPWRSKHRGKMPPPPGPGSGGRPRRGPWG*
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mRNA from alignment at E_fasciculatus_S2_contig983:20291..21282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig983.17838.1 ID=mRNA_E_fasciculatus_S2_contig983.17838.1|Name=mRNA_E_fasciculatus_S2_contig983.17838.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=992bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:20291..21282- (Ectocarpus fasciculatus EfasUO2)
CTCGTGCTGTACGCCAGGGAGGAACGCTTGGCGGAACAATCTCCATGGCG
TAGCAAACATCGCGGCAAGATGCCACCCCCGCCAGGACCGGGCAGGTATT
TTGTGTGATTTTTTCGTTGCAGTTCTCTCTTGGAATGTACAAAGTGTGGC
GTTTGTTGAACCCACTAGATCATGGCCAGCTTCCATACAGCAGTGACGGC
CTTCTGACGAGAAACTTCACTTTAGCGGTAGGTTGAAAGCCTTATCTACG
TTAGCTCAGAATCATGTCTTCCCGAGTTCTTGAAAACATGGCAACATTGA
GAACGTGTTCCCACGCATGCGGTACACTGCGACTGCGGTGTGGAAACATG
CCTGTACTCTGTCCTGTACATGCATCACACGGCCCATACTCGAGCGTTCC
ATATGGTGTCTGCTCTTGTCTCTTTGAGAGGGCTCTCATTGAGTCCTCTT
GATGCCCTCCCGGACCGGCTTGCTCTAGAATCCCCCCACGGTACACCCAA
GTTGGGCTCCGGCAATACCCAGGCCCCGATGTGGGCGGTTCCTTATCGAC
CTGGGGGGGGCGTGAGCTCCCTTCTTTCCGCTCTCTGTTCTTCCACGGCA
GGCCGGTTTTGTCTTGTACATGTAGGTTGTGTTACCGTAGATTCCGCTGA
GCCCAAGTCCTTGGAGCAAGTTCGTTTCAAATATAACTAGACATTAAACG
CATCATGGTCACTACGTGAAGACCGTTCGAAATATGTCTTCTTCTGTTTC
CTGGTGTTCCGATGCGCGGGCCTCTATTGTGTATCGTGCGAGTGTGAAGC
ACGTGACCCGTACAACAATGGCCATCGCGTCACACATTCTCATTTTCGGT
GCCTGGCCAATGCCTCGAAGGGAATCGTACACATGCTCTCGAGGACAATA
TAGTCGCTTGAACGCCGTCTGTTCTTCTCCCGCGTTTGTCGCGGGTCTTG
CCTTGCAGCGGAGGCAGGCCGCGCAGAGGTCCTTGGGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig983:20291..21282-

>mRNA_E_fasciculatus_S2_contig983.17838.1 ID=mRNA_E_fasciculatus_S2_contig983.17838.1|Name=mRNA_E_fasciculatus_S2_contig983.17838.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=129bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:20291..21282- (Ectocarpus fasciculatus EfasUO2)
CTCGTGCTGTACGCCAGGGAGGAACGCTTGGCGGAACAATCTCCATGGCG
TAGCAAACATCGCGGCAAGATGCCACCCCCGCCAGGACCGGGCAGCGGAG
GCAGGCCGCGCAGAGGTCCTTGGGGGTGA
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