mRNA_E_fasciculatus_S2_contig983.17837.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig983.17837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN9_9PHAE) HSP 1 Score: 1320 bits (3417), Expect = 0.000e+0 Identity = 768/1046 (73.42%), Postives = 805/1046 (76.96%), Query Frame = 1 Query: 1 MTPPAVVAAEDLDGEHSNEYGDEGFESDVPRSRPSRDDRELASAEKGVDGAAVLGSETGLDDTDLQISASSSDAGTAGKKSAPLARQTGFELAQEEQELNKIQTPQLVDGENGIDEEGKGVAFGNAQESRAEDIDKREGGETGLKERDLSFRVPTDGDGDNDDGAREYPSLDMNFDTPVFSLDDDRNPPPEKFLGRTGSVELSSNDLFSPQPFGARE-EEFRVGDGVQLEQQSQPKPNGDRCKTRGRPTEQDIRGARSRTLNPRNRSKESDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLAIQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHRNPPPPGRISPVERNLSYTTLVRQLDMGGRQARMLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAEVWGKSSITPRGIRSPTTGEFGPTIGTEGSIGSSGRVARSGNDNFPAVQGQEAKQQMAGVRAEMLQRALANMRKKA-------KGELEAARVEIDGLKEDKAVLTHALETKAREIRMQLLQ-------------------------------------------------------VNRLKRELQHLSAGAIKLEEASCVVAAASLPLRARGISSAAAAAGETSALAVTKLHEGRAKSAVYSRPALAGGVASINLLDRSQPPPRPDRRLRSEREPWGARARLSDQFSPMGWDRDWGGDGAVAAPAAGTGTPDAAGEGTNTGTPPIAAAMAGEVVSGALGRALSGLQADEAAKNAXXXXXXXXXXXVKLGSLQGKQEDVVAKPEEVEDIAAXXXXXXXPAAGGEVTHLHPCPLAGIMDMSEPPLRSHRRSYYNEDDGKVYNIPRTSDGVIAAELTEVPREDERSKCVVDFQGIVRHGEGCALSKLAPPSERGSSATSRKQSLNNTSV---QGPDQERLLLPGENPMSIGVSVRTWHRDNISGWDPTGEGTTARLPV 2940
M PAVVAAEDL EHSNEYGDEGFESDVPRSRPSRD RE S+EK V+ + VLG +TGLDD DLQ TG ELAQ EQELNK Q +LV+GEN IDEEGKGVA+ N+Q R E +D REG ETGLKERDL FRV TDGDGDNDDGARE PSLDMNFD VFS DDDRN PPEKFLGRTGSVELSSNDL SPQPFGA E EE VG VQLEQQ KP+GDRC+TRGR E+DIRGARSR NP+ RS+ESDGR RLRASSQSRA+A GAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLA+QLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHRNPPPPGRISPVERNLSYTTLVRQLDMGGRQAR LKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAE GQE KQQMA V+AEML+RALANMRKKA KGELEAARVEIDGLKEDKAVLT ALETKAREIRMQLLQ VNRLKRE+QHLSAGAIKLEEASCVVAAAS PLRARGISSAAAAAGETSALAVTKLHEGRAKSAVYSRP GG AS+NLLDRSQPPPRPDR LRSEREPWGARARLS QFSPMGW+R WGGDGAV APAA TGTPDAAGE T G PP AAA+AGEVVSGALGRALSGLQADEAAK+A VKLGS++GKQE+VVAKPE+VEDIAA A GGE TH HPCPLAG+MDMS+PPLRSHRRSYYNEDDGKVY+IPRTSD V AAELTEVPR+DERS CVVDFQGIVRHG GCALS+LAP S R SSATSRKQ LN+TS Q PDQERLLLPGENP+SIG+SVRTWHRD+ S WDPTGEG T +
Sbjct: 1 MAQPAVVAAEDL--EHSNEYGDEGFESDVPRSRPSRDGRE--SSEKCVEESVVLGLDTGLDDADLQ---------------------TGSELAQGEQELNKTQAQRLVEGENAIDEEGKGVAYRNSQGGRTEGMDDREGSETGLKERDLPFRVSTDGDGDNDDGARENPSLDMNFDKAVFSPDDDRNFPPEKFLGRTGSVELSSNDLSSPQPFGAPEKEELHVGGEVQLEQQLPHKPHGDRCETRGREKERDIRGARSRNFNPKYRSQESDGRIRLRASSQSRANARGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHRNPPPPGRISPVERNLSYTTLVRQLDMGGRQARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAE------------------------------------------------GQETKQQMADVKAEMLERALANMRKKARTVLDVAKGELEAARVEIDGLKEDKAVLTQALETKAREIRMQLLQAPKCSNPYVQLCPSNGMDSASANQNPMVPDAEQGLAFFRPQPHKPETRPPPLRVQVNRLKREIQHLSAGAIKLEEASCVVAAASFPLRARGISSAAAAAGETSALAVTKLHEGRAKSAVYSRPDAGGGGASMNLLDRSQPPPRPDRWLRSEREPWGARARLSGQFSPMGWNRVWGGDGAVTAPAADTGTPDAAGEATANGAPPAAAAVAGEVVSGALGRALSGLQADEAAKSADRGDGGVG---VKLGSIKGKQEEVVAKPEKVEDIAAA-------AVGGEETHFHPCPLAGLMDMSDPPLRSHRRSYYNEDDGKVYSIPRTSDDVTAAELTEVPRDDERSMCVVDFQGIVRHGVGCALSQLAPRSARVSSATSRKQLLNSTSAAPGQDPDQERLLLPGENPLSIGISVRTWHRDSTSSWDPTGEGATGACHI 963
BLAST of mRNA_E_fasciculatus_S2_contig983.17837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ47_ECTSI) HSP 1 Score: 1194 bits (3089), Expect = 0.000e+0 Identity = 685/870 (78.74%), Postives = 711/870 (81.72%), Query Frame = 1 Query: 1 MTPPAVVAAEDLDGEHSNEYGDEGFESDVPRSRPSRDDRELASAEKGVDGAAVLGSETGLDDTDLQISASSSDAGTAGKKSAPLARQTGFELAQEEQELNKIQTPQLVDGENGIDEEGKGVAFGNAQESRAEDIDKREGGETGLKERDLSFRVPTDGDGDNDDGAREYPSLDMNFDTPVFSLDDDRNPPPEKFLGRTGSVELSSNDLFSPQPFGARE-EEFRVGDGVQLEQQSQPKPNGDRCKTRGRPTEQDIRGARSRTLNPRNRSKESDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLAIQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHRNPPPPGRISPVERNLSYTTLVRQLDMGGRQARMLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAEVWGKSSITPRGIRSPTTGEFGPTIGTEGSIGSSGRVARSGNDNFPAVQGQEAKQQMAGVRAEMLQRALANMRKKAKGELEAARVEIDGLKEDKAVLTHALETKAREIRMQLLQVNRLKRELQHLSAGAIKLEEASCVVAAASLPLRARGISSAAAAAGETSALAVTKLHEGRAKSAVYSRPALAGGVASINLLDRSQPPPRPDRRLRSEREPWGARARLSDQFSPMGWDRDWGGDGAVAAPAAGTGTPDAAGEGTNTGTPPIAAAMAGEVVSGALGRALSGLQADEAAKNAXXXXXXXXXXXVKLGSLQGKQEDVVAKPEEVEDIAAXXXXXXXPAAGGEVTHLHPCPLAGIMDMSEPPLRSHRRSYYNEDDGKVYNI 2607
M PAVVAAED EHSNEYGDEGFESDVPRSRPSRDDRE S+EK V+ +AVLG +TGLDD DLQISASSSDAGTAGK SAPLARQTG ELAQ EQELNK QT +LVDGENGIDEEGKGVAFGNAQESR E ID REG ETGLKERDL FRVPTD DGD+DDGAREYPSLDMN D VFSLDDDR+P PEKFLGRTGSVE SSNDLFSPQPFGA E EE VGD VQLEQ+ KP+GDRCKTRGR E DIRGARSRT PR RS+E+DGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLA+QLSADEDDFSTSPSFS AMQLQQAAPPAFPRGGGTPAPSPRVARGWTH+NPPPPGRISPVERNLSYTTLVRQLDMGGR+AR LKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAE AKGELEAARVEIDGLKEDKAVLT ALETKAREIRMQLLQVNRLKRE+QHLSAGAIKLEEASCVVAAASLPLRARGISSAAA AG TSA AVTKLHEGRAKSAVYSRP GG AS+NLLDRSQPPPR DRRLRSEREPWGARARLS QFSPMGWDRDWGG+GAV AP AGTGTPDAAGE T TG AA+AGEVVSGA GRALSGLQADEAAK+A VKL S++GKQE+VVAKPE+VEDIAA XX AAGGE THLHPCPLAG+MDMSE PLRSHRRSYYNEDDGK ++
Sbjct: 1 MAQPAVVAAEDP--EHSNEYGDEGFESDVPRSRPSRDDRE--SSEKRVEESAVLGLDTGLDDADLQISASSSDAGTAGKTSAPLARQTGSELAQGEQELNKTQTQRLVDGENGIDEEGKGVAFGNAQESRTEGIDNREGSETGLKERDLPFRVPTDSDGDDDDGAREYPSLDMNLDNAVFSLDDDRDPSPEKFLGRTGSVEFSSNDLFSPQPFGAPEKEELHVGDEVQLEQELPHKPHGDRCKTRGRKKESDIRGARSRTFKPRYRSQENDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSTAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHQNPPPPGRISPVERNLSYTTLVRQLDMGGRRARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAE--------------------------------------------------------------------------AKGELEAARVEIDGLKEDKAVLTQALETKAREIRMQLLQVNRLKREIQHLSAGAIKLEEASCVVAAASLPLRARGISSAAAGAGGTSASAVTKLHEGRAKSAVYSRPGAGGGGASMNLLDRSQPPPRSDRRLRSEREPWGARARLSGQFSPMGWDRDWGGEGAVTAPTAGTGTPDAAGEATATGXXXXXAAVAGEVVSGAFGRALSGLQADEAAKSADRGDGGVG---VKLDSIEGKQEEVVAKPEKVEDIAAVAAXX---AAGGEATHLHPCPLAGLMDMSELPLRSHRRSYYNEDDGKRQHL 786 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig983.17837.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig983.17837.1 >prot_E_fasciculatus_S2_contig983.17837.1 ID=prot_E_fasciculatus_S2_contig983.17837.1|Name=mRNA_E_fasciculatus_S2_contig983.17837.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1022bp MTPPAVVAAEDLDGEHSNEYGDEGFESDVPRSRPSRDDRELASAEKGVDGback to top mRNA from alignment at E_fasciculatus_S2_contig983:11520..18024+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig983.17837.1 ID=mRNA_E_fasciculatus_S2_contig983.17837.1|Name=mRNA_E_fasciculatus_S2_contig983.17837.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6505bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:11520..18024+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig983:11520..18024+ >mRNA_E_fasciculatus_S2_contig983.17837.1 ID=mRNA_E_fasciculatus_S2_contig983.17837.1|Name=mRNA_E_fasciculatus_S2_contig983.17837.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3066bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:11520..18024+ (Ectocarpus fasciculatus EfasUO2)back to top |