mRNA_E_fasciculatus_S2_contig983.17834.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig983.17834.1
Unique NamemRNA_E_fasciculatus_S2_contig983.17834.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.370e-53
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +++VPGIAARGAEIL DGEGDDKVTNTYQLIGKFLALRGPD+TDHEV  DSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPG  D
Sbjct:   30 LTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEV--DSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYD 118          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.950e-31
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +++VPGI     + L  GEG +KV NTYQLIGKFL+L+G D  D    + ++EHCD+FWYWL+  GI+S RSGIVNAIAEK NTWIPG  D
Sbjct:   31 LTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGD--DSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYD 119          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 111 bits (277), Expect = 6.230e-29
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +++VPGI    A+ L +GE D+ +TNTYQLIGKFL L+GPD  D+  +V+S+EHC+KFWYWLQ K I+++RS IV AIA KVN  +PG  D
Sbjct:   30 ITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDN--KVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYD 118          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF00_THAPS)

HSP 1 Score: 110 bits (275), Expect = 7.890e-29
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +++VPGI    A+ L + EG++ +TNTYQLIGKFL L+GPD TD   +V+S EHC+KFWYWLQA GI+++RS IV AIA+KVN  +PG  D
Sbjct:   13 ITEVPGIGPAAAKKLANVEGEEGITNTYQLIGKFLMLKGPD-TDTN-KVESFEHCEKFWYWLQAMGISAHRSAIVKAIAQKVNGLLPGVYD 101          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.020e-28
Identity = 50/91 (54.95%), Postives = 69/91 (75.82%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +++VPGI    A  L   + D+ +TN++QLIGKFL ++GPD  + EV  D V HC+KFWY+L++KG+NS+RSGIV+AIAEK+NT IPG  D
Sbjct:   29 ITQVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEV--DCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINTMIPGIYD 117          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ62_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.460e-28
Identity = 57/95 (60.00%), Postives = 73/95 (76.84%), Query Frame = 1
Query:  124 MSKVPGI---AARGAEILGDGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            ++ VPGI   AAR    +GD E D D++TNTYQLIGKFL L+GPD+  H  +V+S+EH +KFW++L+ KGI+S+RSGIV AIAEKVNT IPG  D
Sbjct:   38 LTDVPGIGPAAARKLGEIGDEEKDSDRITNTYQLIGKFLMLKGPDEDGH--KVESMEHMEKFWWFLKEKGISSHRSGIVRAIAEKVNTMIPGIYD 130          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.140e-27
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILG---DGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            ++ VPGI    A+ LG   DGE + D+VTNTYQLIGKFL L+GPD+  +  +V+SVEH +KFW++L+ KGI+S+RSGIV AIAEKVNT +PG  D
Sbjct:   29 LTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGN--KVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPGIYD 121          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.420e-27
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  124 MSKVPGIAARGAEILGDGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +++VPGI       L  G+ + D++TNT+QLIGKFL L+GPD+ D  +++D +EH +KFWYWL+ KGI S+RS IV AI EK+NT IPG  D
Sbjct:   31 VTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDD--MKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPGIYD 120          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.770e-26
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  130 KVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            +VPGI +     L  GE +D+V NTYQLIGKFL L+  D+ + E  ++   HCD FWYWL++K I + RSGIV AIAEKVNT +PG  D
Sbjct:   31 EVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQITAYRSGIVMAIAEKVNTMLPGIYD 119          
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKZ8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.030e-26
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  106 TPNSLFMSKVPGIAARGAEILGDGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396
            TP +  +  VPGI     + L D   + D++TNTYQL GKFL L+GP  +D E+ +DS+EH +KFW+WL+ +G+N++RS IV A+AEK  T+  G  D
Sbjct:   23 TPTTADLQSVPGIGPATIKKLKDASTEEDRITNTYQLFGKFLMLKGPGHSDDEIEIDSIEHMEKFWHWLKNRGVNTHRSAIVKAVAEKSATFFQGIYD 120          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.370e-5390.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.950e-3159.34protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized6.230e-2957.14protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Uncharacterized7.890e-2958.24protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Hypothetical1.020e-2854.95protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical5.460e-2860.00protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical1.140e-2758.95protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical3.420e-2753.26protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Uncharacterized5.770e-2653.93protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356... [more]
Hypothetical7.030e-2646.94protein n=1 Tax=Pseudo-nitzschia australis TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig983contigE_fasciculatus_S2_contig983:30..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score172.6
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7FQ44
Model size399
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2ARS8@1,2RZN0@2759
Cds size399
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842626.5505273-CDS-E_fasciculatus_S2_contig983:29..2961696842626.5505273-CDS-E_fasciculatus_S2_contig983:29..296Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 30..296 +
1696842626.5627034-CDS-E_fasciculatus_S2_contig983:469..6011696842626.5627034-CDS-E_fasciculatus_S2_contig983:469..601Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 470..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig983.17834.1prot_E_fasciculatus_S2_contig983.17834.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig983 30..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig983.17834.1

>prot_E_fasciculatus_S2_contig983.17834.1 ID=prot_E_fasciculatus_S2_contig983.17834.1|Name=mRNA_E_fasciculatus_S2_contig983.17834.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp
FVSINLPHGFLLLHSYHEPPRPPPPPPPPSSRSFFTPNSLFMSKVPGIAA
RGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFW
YWLQAKGINSNRSGIVNAIAEKVNTWIPGECDV
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mRNA from alignment at E_fasciculatus_S2_contig983:30..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig983.17834.1 ID=mRNA_E_fasciculatus_S2_contig983.17834.1|Name=mRNA_E_fasciculatus_S2_contig983.17834.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=572bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:30..601+ (Ectocarpus fasciculatus EfasUO2)
TTTGTTTCTATTAACTTGCCACATGGTTTTCTGTTGTTGCATTCGTATCA CGAACCACCCAGGCCCCCCCCCCCCCCCCCGCCCCCTTCCTCGCGATCTT TTTTTACACCGAATTCTCTGTTCATGTCGAAGGTGCCCGGCATCGCAGCA AGAGGGGCGGAGATCCTGGGGGACGGAGAGGGAGACGACAAGGTCACCAA CACATACCAGCTCATCGGAAAGTTTTTAGCACTCCGGGGACCCGACCAAA CCGATCATGAGGTACGCGTGGGTGCCATCGTGCCCATACCTACATTGGCC TGAACATTTCCACGAGGCCGTACCTGGTAGGATTTTACTCCTGGTAGGGT TTACTTCGCCGTGGACGTGCCGTGGACGTACCGAAAGTCATCAAGATGCG GCGTAATCTTGTTGTTTGTGTCGTTTCTTGTTTTGCCAAGGTGGACTCCG TGGAGCACTGCGACAAGTTCTGGTACTGGCTGCAGGCGAAGGGCATCAAC TCGAACCGATCTGGCATTGTCAACGCCATCGCCGAAAAGGTCAACACCTG GATTCCTGGTGAGTGTGATGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig983:30..601+

>mRNA_E_fasciculatus_S2_contig983.17834.1 ID=mRNA_E_fasciculatus_S2_contig983.17834.1|Name=mRNA_E_fasciculatus_S2_contig983.17834.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:30..601+ (Ectocarpus fasciculatus EfasUO2)
TTTGTTTCTATTAACTTGCCACATGGTTTTCTGTTGTTGCATTCGTATCA
CGAACCACCCAGGCCCCCCCCCCCCCCCCCGCCCCCTTCCTCGCGATCTT
TTTTTACACCGAATTCTCTGTTCATGTCGAAGGTGCCCGGCATCGCAGCA
AGAGGGGCGGAGATCCTGGGGGACGGAGAGGGAGACGACAAGGTCACCAA
CACATACCAGCTCATCGGAAAGTTTTTAGCACTCCGGGGACCCGACCAAA
CCGATCATGAGGTACGCGTGGACTCCGTGGAGCACTGCGACAAGTTCTGG
TACTGGCTGCAGGCGAAGGGCATCAACTCGAACCGATCTGGCATTGTCAA
CGCCATCGCCGAAAAGGTCAACACCTGGATTCCTGGTGAGTGTGATGTG
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