mRNA_E_fasciculatus_S2_contig9827.17833.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9827.17833.1
Unique Name	mRNA_E_fasciculatus_S2_contig9827.17833.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9827.17833.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K639_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 6.430e-121
Identity = 228/248 (91.94%), Postives = 235/248 (94.76%), Query Frame = 1

Query:    1 MCDVLPEKKVSLWAARSRERCVGQFQTETEVDQHLGPVTPVVPERAQAEGLSTERLEKYIKTNSSALVELAKLEEEKAKRAKVAAAGGEQEDPALLARIGVVKEGIYKRMKLLASWADLDDDQKSRTLYREHPQDVRTPHAAGYGAMGHAAEYSGGGGSQYHHAPEAQRAAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLAGGPWEAPE-ARVRTSKYHGVSFFKGRFTAQFTWAGKQ 741
            MCDVLPEKKVSLWAARSRERCVGQFQTETEVDQHLGPVTPV+PERAQAE L+ E+LEKYI TNSSALVELAKLEEEKAK+AKVAAAGGEQEDPALLARIGVVK+GIYKRMKLLASWADLDDDQKSRTLYRE PQD RTP AAGYGAMGHAAEYSGGG SQYHHAPE QRAAQL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQG+AGGPWEAPE ARVRTSKYHGVSFFKGR+TAQFTW GKQ
Sbjct:   27 MCDVLPEKKVSLWAARSRERCVGQFQTETEVDQHLGPVTPVIPERAQAEALNAEKLEKYITTNSSALVELAKLEEEKAKQAKVAAAGGEQEDPALLARIGVVKDGIYKRMKLLASWADLDDDQKSRTLYREQPQDGRTP-AAGYGAMGHAAEYSGGG-SQYHHAPETQRAAQLARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGIAGGPWEAPEQARVRTSKYHGVSFFKGRYTAQFTWGGKQ 272

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9827.17833.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A6_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 7.220e-87
Identity = 181/208 (87.02%), Postives = 189/208 (90.87%), Query Frame = 1

Query:  121 VVPERAQAEGLSTERLEKYIKTNSSALVELAKLEEEKAKRAKVAAAGGEQEDPALLARIGVVKEGIYKRMKLLASWADLDDDQKSRTLYREHPQDVRTPHAAGYGAMGHAAEYSGGGGSQYHHAPEAQRAAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLAGGPWEAPE-ARVRTSKYHGVSFFKGRFTAQFTWAGKQ 741
            V+PE+   + L+ E+LEKYIKTNS ALVELAKLEEEKAK+AKVAAAGGEQEDPALL RIGVVK+GIYKRMKLLASWADLDDDQKSRTLYRE PQD RTP AAGYGAMGHAAEYSGGG SQ+HHAPE QRAAQL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLAGGPWEAPE  RVRTSKYHGVSFFKGRFTAQFTW GKQ
Sbjct:    4 VLPEK---KALNAEKLEKYIKTNSRALVELAKLEEEKAKQAKVAAAGGEQEDPALLTRIGVVKDGIYKRMKLLASWADLDDDQKSRTLYREQPQDGRTP-AAGYGAMGHAAEYSGGG-SQHHHAPETQRAAQLARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLAGGPWEAPEQTRVRTSKYHGVSFFKGRFTAQFTWGGKQ 206

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9827.17833.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9827.17833.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	6.430e-121	91.94	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	7.220e-87	87.02	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9827	contig	E_fasciculatus_S2_contig9827:1945..5612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	1
Model size	741
Hectar predicted targeting category	other localisation
Exons	4
Ec32 ortholog description	DNA-binding domain
Ec32 ortholog	Ec-16_001860.1
Cds size	741

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842626.4855535-CDS-E_fasciculatus_S2_contig9827:1944..2138	1696842626.4855535-CDS-E_fasciculatus_S2_contig9827:1944..2138	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9827 1945..2138 +
1696842626.50054-CDS-E_fasciculatus_S2_contig9827:3089..3264	1696842626.50054-CDS-E_fasciculatus_S2_contig9827:3089..3264	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9827 3090..3264 +
1696842626.5103312-CDS-E_fasciculatus_S2_contig9827:4845..5133	1696842626.5103312-CDS-E_fasciculatus_S2_contig9827:4845..5133	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9827 4846..5133 +
1696842626.5203805-CDS-E_fasciculatus_S2_contig9827:5528..5612	1696842626.5203805-CDS-E_fasciculatus_S2_contig9827:5528..5612	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9827 5529..5612 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9827.17833.1	prot_E_fasciculatus_S2_contig9827.17833.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9827 1945..5612 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9827:1945..5612+
coding sequence from alignment at E_fasciculatus_S2_contig9827:1945..5612+

protein sequence of mRNA_E_fasciculatus_S2_contig9827.17833.1

>prot_E_fasciculatus_S2_contig9827.17833.1 ID=prot_E_fasciculatus_S2_contig9827.17833.1|Name=mRNA_E_fasciculatus_S2_contig9827.17833.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=247bp
MCDVLPEKKVSLWAARSRERCVGQFQTETEVDQHLGPVTPVVPERAQAEG
LSTERLEKYIKTNSSALVELAKLEEEKAKRAKVAAAGGEQEDPALLARIG
VVKEGIYKRMKLLASWADLDDDQKSRTLYREHPQDVRTPHAAGYGAMGHA
AEYSGGGGSQYHHAPEAQRAAQLARAARTAQYHEQVQLLQAQAARAAAAA
AAAAAAAQGLAGGPWEAPEARVRTSKYHGVSFFKGRFTAQFTWAGKQ

mRNA from alignment at E_fasciculatus_S2_contig9827:1945..5612+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9827.17833.1 ID=mRNA_E_fasciculatus_S2_contig9827.17833.1|Name=mRNA_E_fasciculatus_S2_contig9827.17833.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3668bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9827:1945..5612+ (Ectocarpus fasciculatus EfasUO2)
ATGTGTGATGTGCTTCCGGAGAAGAAGGTGAGCCTGTGGGCCGCTCGGTC
GCGGGAACGGTGCGTGGGACAGTTCCAGACTGAGACCGAGGTTGACCAGC
ATTTGGGCCCCGTGACGCCGGTTGTCCCTGAACGCGCCCAAGCCGAGGGG
CTGAGCACGGAGAGGCTTGAGAAGTACATCAAGACCAACTCCAGGTATGA
GACTGGTGCGATTCTGTGTACCAACGGGCTCGGTGGTGAGGTGCTACTGC
TGTCCTCGCGGTAACATGCGGAATCCTCTGCTGTGTGTGTGTCGTTTGAA
TTTTCTTACGGACCGTTATTTCAATGGCTAGATTGTGGGAGTCGAGGCAC
GCTCGAGAGAGAGGAAGGTACAGCAGTACATACTACAGCAGCCGTCAACG
AGGGTTCGCAAGAAACAGCAGTGCAGCGGTACCGTCGCGTGTACATGGAC
GGTACTGTTCTATGGTTCAAGGTATATCGCACCAGCGCGTTGGGCTTCAT
GTCGTACAACAGTTATTTATGTAGATCGAGGCACCGATTTACATCAACAT
TTACCCCGTCGCAACTTGCATGGCATTCATCGCACACCCTCGAGCGAAAG
AGCCGTTTAGCCAAACTCCGGGACCCACTGCTGCTGTACCTGTGATACCA
TCACTTTAGGCAGGTCCATCTCTGTGTTGTATTACGTTTTCCTCAGTTAC
CAAACATGTCACTTGCAGAGGTTGGTTGTCGAAGTGGACGGCAATGATAC
CTGTAAAGTGCCAACCTACCGCCGTAGGTGCGGAAGAAACCACCCACCCG
CTTGATGACTGCTCGGAGTCCAAACCATGTACTTCATCCCGCCATGATAT
TGAATGTGTATGTAGGGCGTGTGGTATCTTGTTTACATTACCCGTGTGAT
CGAGTGCGCTTGCACGGCGCACAGGCGGTGTGTTGGTGTCCGGGATGGCA
TGCCGCTTGATCGCGTCCCTTACTCACGACAAGCATTCTCGCGCCTGGAT
GCTGAGCGAGTCTCTCAGCAGGGGGGCACACTATCCCCCCGCCGCGGCGC
ATTACTCCCCCCTTTCAACGGAAAACAGTTTCGTGCACAAGTGCATCTTT
TTTTTACCACACTGCCACCGTCTTCGCCACCCTCGCACAACGCAGTGCTC
TGGTGGAGCTGGCCAAGCTGGAGGAGGAGAAGGCCAAGCGAGCCAAGGTG
GCTGCGGCGGGGGGCGAGCAGGAGGACCCCGCACTCCTGGCGCGCATCGG
GGTCGTGAAGGAAGGGATCTACAAACGGATGAAGCTGCTTGCCAGCTGGG
CTGACCTTGACGACGACCAGGTATGTATTGTAGTTGTTGTAAGGCGCCCC
TCCGGAGCTGGGCTCATCAGAGCATGGCGGTATGTAGTGTTATCACAGCA
GTGTGATGCAAGATGAACTTAGAGAGCAGCGTTGGTGTGAATCAAGTGCC
AGCTGCCAGAAGTGACGTTTCCCGAGCTCGAACAGCTCACACAGCTCACG
TGTTTTCGACTCGAAGAGCCCAGCGAACCTCAACGAACCGGAAAGAAAGA
ATTACAAATCTGTGTACAGTCTTGCGTGCCTGCGAGGTCTGTTCGAAAGC
ATGAGGGTAGTGCTCTCTCTAGCCTACACTTTGCAGCTGGCTCGTGTTGC
AATGGCAGCTACTGCTCTCCTCCCACCAACCGCTGTTTGAAGCGCCACCG
CCCTCGCTTGCCACGGCGACCTTCTCGGTGCCACTGTTGTAGTTTCGTGG
CTGCTGCTACACTAAATCTATTCCGTTGGGCGAACATGTCTTCCCTCTTT
CCAGAACAGTCGGCGTTGACGGTCTCTCATCGAATTCGTTCCCAGTTGGT
GTTTTATGTAGAGTCTACGATGAACGCCGAGTTGTGGCCGTATTTGGCCC
TTGCGCTTCCAACCCCTTGCCGTCGTCTTAACACCGCTTTTGCATCTCAG
CATTGGTTGATCCGTGCACCTCTTGCCTCCATCCTGTTCAAGGTTCAAAG
AAAATTCCGTCGCCTTACTGTGTTGCAGGCAGGTTGTATGCATACAGTAT
GCGCCCCCCCCCCCGAGTTATGGTAGTATCAAGGAAGAGGAGAACGCGAC
CGACAAAGACCATCCCACAGCTCGCGAAAACGCGTGTGAAGTTTTCAAAC
GCTGTTCATTGATTCCAGACATGAGCCGTGAGAGCGAGATAGGGCAAAAA
AAACGTGTTCCAGAAATTGGACTAGAAATGGACGGGAGGGGGCGAAAGGG
GGGGGATACCCACGGTTCATATGGCAGTGAAAAAGGGTGTGTGTTTGTGT
GTGTTTTCCTCCGTCGACGCGTGACGCCCCACGGGTTGGCAAAACCCTCC
GAAAGCAGCACACTCCCGCACGAAATCCGGGGACGGGGGGAGCACGTATT
ATTGGCGTTCGCCCTGATTTTGTCCACCTTGAGTGCAAAGCCGAAAAATG
GACACTGCTGTCGAAGCAACGCCCCGCGTTCCGCACTGTCCTTGCGACCA
AGGCCAGCCGCCTGTAGATAGCAAGCTCAGGGCGCTGATGATAGGGCACA
AGGACGGAGAAGTCTACCCCCCCCCACGTACACAAGCACGTGAAGCATTT
CGCCAAAAATCGAAACGCGGCACCTGTACGTGGGTACTATGATACATATA
TTCTTCAGGTGACGGAGGTGAACACGAGGAGGAAGATAGAACCATCATCA
AGGGGTTAAGGACCCAAGCACGAACACGAGTAGAAAGAAGGACAACTAAC
TGTAGCAGCCTCGGGGACACCCCAGCTCTTTGCCTATCTCGGGGGGCGTT
CCGCCCGTCCTTCGCACCGTATAAACACAATATACATTCTCCCCCACCCA
CACAGTAGTCTTTTTTATCGCCGCGTTACGATTCTCCCCCCGCACACACA
GAAATCCCGCACCCTCTACCGAGAGCACCCGCAAGACGTGCGGACACCTC
ACGCGGCGGGCTACGGGGCGATGGGCCACGCGGCGGAGTACTCGGGCGGC
GGCGGCAGCCAGTACCACCACGCCCCGGAGGCGCAGAGGGCCGCGCAGCT
CGCCCGCGCCGCCCGCACCGCCCAGTACCACGAGCAGGTGCAGTTGCTGC
AGGCTCAGGCGGCCCGCGCGGCGGCTGCGGCGGCCGCGGCGGCGGCGGCG
GCGCAAGGGCTGGCGGGGGGGCCGTGGGAAGCTCCCGAGGTACGTATGTA
CCCTTGGTCACTCTTTTTGTCAATGGTCCAAGTCAGGAGGAGGTTGGTGC
AGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGGTGTCTTCACATTCGAAA
CCGTTCCGAGCTCTGTACCCAGTACCTTCAGGTGTCCGTACTGATACGGG
ATGCAGCGAAGCCCCTGGATCCTTTTACCACGACACGCGATGTACGGCAG
AAAAAGCACAGGTAGAAGCCCGAAAGCTGACGGCATGTATTTTCGCAAGC
CAGAAGAGCGGGTGTTGCTGAGCTTTATCGAGAGGGACGTGGCTAAGTGA
CTCAAGACCACTTACCCCACCCACCCACCTTTGCCCCGCCCGCGCGCCAC
ATTCTTGGCCTCTTGTTCGACGAAAATGCCGCAGGCACGAGTGAGAACTT
CCAAGTATCACGGTGTCTCCTTCTTCAAGGGACGGTTCACTGCACAGTTT
ACCTGGGCCGGGAAGCAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9827:1945..5612+

>mRNA_E_fasciculatus_S2_contig9827.17833.1 ID=mRNA_E_fasciculatus_S2_contig9827.17833.1|Name=mRNA_E_fasciculatus_S2_contig9827.17833.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9827:1945..5612+ (Ectocarpus fasciculatus EfasUO2)
ATGTGTGATGTGCTTCCGGAGAAGAAGGTGAGCCTGTGGGCCGCTCGGTC
GCGGGAACGGTGCGTGGGACAGTTCCAGACTGAGACCGAGGTTGACCAGC
ATTTGGGCCCCGTGACGCCGGTTGTCCCTGAACGCGCCCAAGCCGAGGGG
CTGAGCACGGAGAGGCTTGAGAAGTACATCAAGACCAACTCCAGTGCTCT
GGTGGAGCTGGCCAAGCTGGAGGAGGAGAAGGCCAAGCGAGCCAAGGTGG
CTGCGGCGGGGGGCGAGCAGGAGGACCCCGCACTCCTGGCGCGCATCGGG
GTCGTGAAGGAAGGGATCTACAAACGGATGAAGCTGCTTGCCAGCTGGGC
TGACCTTGACGACGACCAGAAATCCCGCACCCTCTACCGAGAGCACCCGC
AAGACGTGCGGACACCTCACGCGGCGGGCTACGGGGCGATGGGCCACGCG
GCGGAGTACTCGGGCGGCGGCGGCAGCCAGTACCACCACGCCCCGGAGGC
GCAGAGGGCCGCGCAGCTCGCCCGCGCCGCCCGCACCGCCCAGTACCACG
AGCAGGTGCAGTTGCTGCAGGCTCAGGCGGCCCGCGCGGCGGCTGCGGCG
GCCGCGGCGGCGGCGGCGGCGCAAGGGCTGGCGGGGGGGCCGTGGGAAGC
TCCCGAGGCACGAGTGAGAACTTCCAAGTATCACGGTGTCTCCTTCTTCA
AGGGACGGTTCACTGCACAGTTTACCTGGGCCGGGAAGCAG