mRNA_E_fasciculatus_S2_contig9819.17826.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9819.17826.1
Unique Name	mRNA_E_fasciculatus_S2_contig9819.17826.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9819.17826.1 vs.
Match: ULP_PROTEASE (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.580e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1

Query:   31 FLQAKWDDSERGVTKFNQEV--LPLVRPLAPSQNNGSDCGMYALRYAKARPRLAW 189
            ++QA+W  +          V  LPLV+P AP Q+NG DCG+Y L+YA+   R AW
Sbjct:   77 YVQAEWKAAYPEAPPLTLSVRDLPLVKPRAPQQSNGCDCGVYVLQYAETLLR-AW 130

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9819.17826.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9819.17826.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
ULP_PROTEASE	5.580e-5	43.64	domain-containing protein n=1 Tax=Tribonema minus ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9819	contig	E_fasciculatus_S2_contig9819:1095..1286 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	65.9
Seed ortholog evalue	8.1e-09
Seed eggNOG ortholog	2880.D8LDN6
Model size	192
KEGG ko	ko:K08596
Hectar predicted targeting category	other localisation
GOs	GO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons	1
EggNOG free text desc.	protein modification by small protein removal
EggNOG OGs	COG5160@1,KOG0779@2759
EC	3.4.22.68
Cds size	192
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842625.671023-CDS-E_fasciculatus_S2_contig9819:1094..1286	1696842625.671023-CDS-E_fasciculatus_S2_contig9819:1094..1286	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9819 1095..1286 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9819.17826.1	prot_E_fasciculatus_S2_contig9819.17826.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9819 1095..1286 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9819:1095..1286-
coding sequence from alignment at E_fasciculatus_S2_contig9819:1095..1286-

protein sequence of mRNA_E_fasciculatus_S2_contig9819.17826.1

>prot_E_fasciculatus_S2_contig9819.17826.1 ID=prot_E_fasciculatus_S2_contig9819.17826.1|Name=mRNA_E_fasciculatus_S2_contig9819.17826.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=64bp
MPVDELRPFSFLQAKWDDSERGVTKFNQEVLPLVRPLAPSQNNGSDCGMY
ALRYAKARPRLAW*

mRNA from alignment at E_fasciculatus_S2_contig9819:1095..1286-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9819.17826.1 ID=mRNA_E_fasciculatus_S2_contig9819.17826.1|Name=mRNA_E_fasciculatus_S2_contig9819.17826.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=192bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9819:1095..1286- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGTGGACGAACTGCGACCCTTCAGTTTCCTTCAAGCCAAGTGGGA
CGACAGTGAGAGAGGGGTTACAAAGTTCAACCAGGAGGTGCTTCCCCTGG
TGCGACCGCTTGCTCCGAGTCAGAACAATGGCAGCGACTGCGGAATGTAC
GCCCTCCGATACGCTAAGGCAAGACCTAGACTAGCATGGTGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9819:1095..1286-

>mRNA_E_fasciculatus_S2_contig9819.17826.1 ID=mRNA_E_fasciculatus_S2_contig9819.17826.1|Name=mRNA_E_fasciculatus_S2_contig9819.17826.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=192bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9819:1095..1286- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGTGGACGAACTGCGACCCTTCAGTTTCCTTCAAGCCAAGTGGGA
CGACAGTGAGAGAGGGGTTACAAAGTTCAACCAGGAGGTGCTTCCCCTGG
TGCGACCGCTTGCTCCGAGTCAGAACAATGGCAGCGACTGCGGAATGTAC
GCCCTCCGATACGCTAAGGCAAGACCTAGACTAGCATGGTGA