mRNA_E_fasciculatus_S2_contig9817.17824.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9817.17824.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ2_9PHAE) HSP 1 Score: 478 bits (1229), Expect = 3.570e-146 Identity = 573/755 (75.89%), Postives = 584/755 (77.35%), Query Frame = 1
Query: 178 SRKRKTSDDQGSGAREGEGLPGAVAA--VPKDAAGGENGKSGAGTGADKDKADDAGGSDSSDDLTIAQPRPKRARTSSEGGGLAHPSSGTPTAAADGKSGPSPAKSRQRVVNAS-----AGPTASPATRGKDRSD-SNGGVDKAGAA------ETSGGRAXXXXXXXXEKEGFLAAEKEXXXXXXXRRLQARRRGRHARSPYLHGGTGGRIDPSGGLPTSVRPVALALGGGGRGGG-AKLGGTPVKSASKGWTCQGCYVRVYDMDLKACDMCGRPRNFGTPSFKNPPAVLPGGRTLYTVRAGLEAAGLASPGMPGTPAVTVGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----RVTFSFGPSTPAATAAAXXXXXXXXXXXXXXAGPAFSFGGGSAG--TSSAAAKTASSSVSTAAXAXXXXXXXXXXXXXXXXXXXXXXKDVS---------SAGXXXXXXXXXXXSTAAFTFGGAXXXXXXXXXXXXXXXXXXT-----------ATKTIGAAAGTGGAXXXXXXXXTPGFTFGAAAPXXXXXXXXXXXXXXXXXXSGLAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPAVGAGXXXXXXXXXXXXXXXXXXXXXXXT-KTPGVPAFSFG--TTAPAAAXXXXXXXXXXXXXXIASRLGPAPTAAGLAAPKPSPATGGFXXXXXXXXPXXXXXXXGTKRASSPAVAPGFGVAQPPPRGPSPATSAFGAAGA 2310
SRKRKTSDDQGSG + GE LPGA AA VPKDAAGGENGK+G GTGAD DKADDAGGSDSSDDL I QPRPKRARTSSEGGG+AHPSSGTPT+A DGKSGPSPA+SRQRV NAS AGP ASPATRGK +D S GGVDKAGA + XXXXXXXX XXXXXXX GRHARSPYLHGGTGGRIDPSGGLPTSVRPVALALG AKLGGTPVKSASKGWTCQGCYVRVYDMDLKACDMC RPRNFGTPSFKNPPAVLPGGRTLYTVRAGLEAAGLASPG+PGT A TVGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVTFSFGPSTPAA XXXXXXXXXXXXXX SSAAAKTA SSVSTA X XXXXXXXXXXXXXXXXXXXXXX + XXXXXXXXXXX AAFTFG A XXXXXXXXXXXXXXX A KTIGAAAGT GA TPGFTFG XXXXXXXXXXXXXXXXX SGLAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA+PAVGAG XXXXXXX XXXXXXXXXXXXXT KTPGVPAFSFG TTAPAAA XXXX IASRLGPAPTAA LAAPKPS XXXXXXXX XXXXXXX TKRASSPAV+ GFGVAQ PPRGPSPATSAFGAAGA
Sbjct: 779 SRKRKTSDDQGSGPQRGEDLPGAAAAAAVPKDAAGGENGKNGTGTGADMDKADDAGGSDSSDDLAIVQPRPKRARTSSEGGGVAHPSSGTPTSAGDGKSGPSPAESRQRVANASSSPVAAGPAASPATRGKGGADNSGGGVDKAGAXXXXXXXRXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHARSPYLHGGTGGRIDPSGGLPTSVRPVALALGXXXXXXXXAKLGGTPVKSASKGWTCQGCYVRVYDMDLKACDMCRRPRNFGTPSFKNPPAVLPGGRTLYTVRAGLEAAGLASPGVPGTAAATVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTFSFGPSTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSAAAKTAPSSVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGSXXXXXXXXXXXXXAAFTFGRAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKTIGAAAGTDGATPAAAPAPTPGFTFGXXXXXXXXXXXXXXXXXXXXXASGLAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPAVGAGAXXXXXXXTVXXXXXXXXXXXXXTTKTPGVPAFSFGATTTAPAAAAXXXXSAAGGPGG-IASRLGPAPTAACLAAPKPSTXXXXXXXXXXXXXXXXXXXXXXTKRASSPAVSAGFGVAQQPPRGPSPATSAFGAAGA 1532
BLAST of mRNA_E_fasciculatus_S2_contig9817.17824.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF3_ECTSI) HSP 1 Score: 301 bits (770), Expect = 1.670e-86 Identity = 483/785 (61.53%), Postives = 489/785 (62.29%), Query Frame = 1
Query: 97 SAEKGTGXXXXXXXXXXEESSPKAAPGSRKRKTSDDQGSGAREGEGLPGAVAAVPKDAAGGENGKSGAGTGADKDKADDAGGSDSSDDLTIAQPRPKRARTSSEGGGLAHPSSGTPTAAADGKSGPSPAKSRQRVVN-------ASAGPTASPATRGKDRSDSNGGVDKAGAAETSGGRAXXXXXXXXEKEGFLAAEKEXXXXXXXR---RLQARRRGRHARSPYLHGGTGGRIDPSGGLPTSVRPVALALGGGGRGGG-AKLGGTPVKSASKGWTCQGCYVRVYDMDLKACDMCGRPRNFGTPSFKNPPAVLPGGRTLYTVRAGLEAAGLASPGMPGTPAVTVGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----RVTFSFGPSTPAATAAAXXXXXXXXXXXXXXAGPAFSFGGGSAG--TSSAAAKTASSSVSTAAXAXXXXXXXXXXXXXXXXXXXXXXKDVSSAGXXXXXXXXXXXSTAAFTFGGAXXXXXXXXXXXXXXXXXXTA--------TKTIGAAAGTGGAXXXXXXXXT---------------PGFTFGAAAPXXXXXXXXXXXXXXXXXXSGLAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPAVGAGXXXXXXXXXXXXXXXXXXXXXXXT-KTPGVPAFSFGTTAPAAAXXXXXXXXXXXXXXIASRLGPAPTAAGLAAPKPSPATGGFXXXXXXXXPXXXXXXXG-TKRASSPAVAPGFGVAQPPPRGPSPATSAFGAAGATGFGG 2325
S EKG+G EESSPKAAPGSRKRKTSD SDSSDDL I QPRPKRARTSSEGG +AGP ASPATRGK +D DKAG XXXXXXXX XXXXXXX RLQARRRGRHARSPYLHGGTGGRIDPSGGLPTSVRPVALALG AKLGGTPV+SASKGWTCQGCYVRVYDMDLK CDMC RPRNFGTPSFKNPPAVLPGGRTLYTVRAGLEAAGLASPGMPGT A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVTFSFGPSTPAA XXXXXXXXXXXXXX SSAAAKTA SSVST X XXXXXXXXXXXXXXXXXX SS+ XXXXXXXXXX XXXXXXXXXXXXXXXXXX TKTIGAAAGT G XXXXXXXX P FT AAA XXXXXXXXXXXXXXXXXX AKPAVGA XXXXXXXXXXXXXXXXXXXXXXXT KT GVPAFSFG TAPAAAX XXXXXX IASRLGPAPTAAGLAAPKPSPAT GF XXXXXX P XXXXX TKRASSPAV+ GFGVAQ P RG SPATSAF A GATGF G
Sbjct: 62 SGEKGSGVGKDAAPAPAEESSPKAAPGSRKRKTSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSSDDLAITQPRPKRARTSSEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAGPAASPATRGKGGADK---ADKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQARRRGRHARSPYLHGGTGGRIDPSGGLPTSVRPVALALGXXXXXXXXAKLGGTPVRSASKGWTCQGCYVRVYDMDLKVCDMCRRPRNFGTPSFKNPPAVLPGGRTLYTVRAGLEAAGLASPGMPGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTFSFGPSTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSAAAKTAPSSVSTVXXXXXXXXXXXXXXXXXXXXXAAGGATGSSSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTIGAAAGTDGXXXXXXXXXXXXXXXXXXXXXXXXXPSFT--AAAXXXXXXXXXXXXXXXXXXXXXXXGTTPPAAAQAPGAAAATPSTFTFG--------------AKPAVGAXXXXXXXXXXXXXXXXXXXXXXXXTTKTLGVPAFSFGATAPAAAXPXXXXXXGGSGG-IASRLGPAPTAAGLAAPKPSPATTGFGXXXXXXAPAGXXXXXXXTKRASSPAVSTGFGVAQQPTRGESPATSAFCAFGATGFAG 826 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9817.17824.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9817.17824.1 >prot_E_fasciculatus_S2_contig9817.17824.1 ID=prot_E_fasciculatus_S2_contig9817.17824.1|Name=mRNA_E_fasciculatus_S2_contig9817.17824.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=777bp GDGGDDDAPVAASNGGGSATRQHQAAAAAAAVSAEKGTGAAKAAAPAPAEback to top mRNA from alignment at E_fasciculatus_S2_contig9817:1345..5291- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9817.17824.1 ID=mRNA_E_fasciculatus_S2_contig9817.17824.1|Name=mRNA_E_fasciculatus_S2_contig9817.17824.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3947bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9817:1345..5291- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9817:1345..5291- >mRNA_E_fasciculatus_S2_contig9817.17824.1 ID=mRNA_E_fasciculatus_S2_contig9817.17824.1|Name=mRNA_E_fasciculatus_S2_contig9817.17824.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2331bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9817:1345..5291- (Ectocarpus fasciculatus EfasUO2)back to top |