mRNA_E_fasciculatus_S2_contig9813.17822.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9813.17822.1
Unique Name	mRNA_E_fasciculatus_S2_contig9813.17822.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.710e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 DNANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            DNANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV
Sbjct:  393 DNANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 435

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-17
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1

Query:    1 DNANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            DNA FETPRDAVNTSFPVRPGDIIILATDGLFDNMELE ISSV
Sbjct:  638 DNAKFETPRDAVNTSFPVRPGDIIILATDGLFDNMELETISSV 680

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA81_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.310e-12
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1

Query:   13 FETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            FETPRDAVNTSFP+ PGDI+ILATDGL+DNMEL+ +  +
Sbjct:  183 FETPRDAVNTSFPIMPGDIVILATDGLYDNMELDEMCDI 221

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.940e-9
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1

Query:   13 FETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            FETPR A  TS PV PGD I++ATDGLFDN+ELE I ++
Sbjct:  122 FETPRHADTTSVPVMPGDTIVIATDGLFDNVELEEIGAI 160

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSW7_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 5.970e-9
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1

Query:   13 FETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            FETP DA  T++PV PGD+II+ATDGLFDN+EL+ I  +
Sbjct:   54 FETPADADTTAYPVIPGDVIIIATDGLFDNVELDEICRI 92

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFN6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.010e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1

Query:   13 FETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            FETPR A  TS PV PGD I++ATDGLFDN+ELE I ++
Sbjct:  122 FETPRHADTTSVPVMPGDTIVIATDGLFDNVELEEIGAI 160

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: CBS (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSQ1_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-8
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1

Query:    4 NANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            NA+FE+P DA   S PV PGD+I+LATDGLFDN++L+ I  +
Sbjct:  490 NASFESPSDADTASIPVMPGDVIVLATDGLFDNVDLDEIVGI 531

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TY81_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.660e-8
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   13 FETPRDAVNTSFPVRPGDIIILATDGLFDNMELENI 120
            FETPR A  TSFPV PGD II+ATDGLFDN+EL+ +
Sbjct:  511 FETPRHADTTSFPVLPGDTIIIATDGLFDNVELDEL 546

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AEP2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-7
Identity = 22/43 (51.16%), Postives = 35/43 (81.40%), Query Frame = 1

Query:    1 DNANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            D ++F+T  D+ NTS  +R GDIII+ATDGLFDN+++++I+ +
Sbjct:    6 DESSFKTAADSCNTSIHIRRGDIIIMATDGLFDNVDIDDIAKI 48

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BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Match: Protein (phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THC9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.380e-7
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1

Query:   13 FETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV 129
            F+TP DA N+S P+  GD+II+ TDGLFDN+EL+ I S+
Sbjct:  532 FDTPSDADNSSIPIMRGDVIIMGTDGLFDNVELDEICSI 570

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9813.17822.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Protein	2.710e-19	100.00	phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
Uncharacterized	1.170e-17	95.35	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Protein	3.310e-12	74.36	phosphatase n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
Protein	5.940e-9	66.67	phosphatase (Fragment) n=1 Tax=Pinguiococcus pyren...	[more]
Protein	5.970e-9	64.10	phosphatase n=1 Tax=Heterosigma akashiwo TaxID=282...	[more]
Protein	1.010e-8	66.67	phosphatase n=2 Tax=Pinguiococcus pyrenoidosus Tax...	[more]
CBS	1.420e-8	59.52	domain-containing protein n=1 Tax=archaeon TaxID=1...	[more]
Protein	2.660e-8	72.22	phosphatase n=1 Tax=Phaeomonas parva TaxID=124430 ...	[more]
Protein	1.820e-7	51.16	phosphatase (Fragment) n=1 Tax=Minutocellus polymo...	[more]
Protein	2.380e-7	58.97	phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9813	contig	E_fasciculatus_S2_contig9813:5239..5367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	89.4
Seed ortholog evalue	4.6e-16
Seed eggNOG ortholog	2880.D8LCX2
Preferred name	PPTC7
Model size	129
KEGG ko	ko:K17508
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons	1
EggNOG free text desc.	phosphoprotein phosphatase activity
EggNOG OGs	COG0631@1,KOG1379@2759
EC	3.1.3.16
Cds size	129
COG Functional cat.	T
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01009

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842625.4790506-CDS-E_fasciculatus_S2_contig9813:5238..5367	1696842625.4790506-CDS-E_fasciculatus_S2_contig9813:5238..5367	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9813 5239..5367 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9813.17822.1	prot_E_fasciculatus_S2_contig9813.17822.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9813 5239..5367 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9813:5239..5367+
coding sequence from alignment at E_fasciculatus_S2_contig9813:5239..5367+

protein sequence of mRNA_E_fasciculatus_S2_contig9813.17822.1

>prot_E_fasciculatus_S2_contig9813.17822.1 ID=prot_E_fasciculatus_S2_contig9813.17822.1|Name=mRNA_E_fasciculatus_S2_contig9813.17822.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=43bp
DNANFETPRDAVNTSFPVRPGDIIILATDGLFDNMELENISSV

mRNA from alignment at E_fasciculatus_S2_contig9813:5239..5367+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9813.17822.1 ID=mRNA_E_fasciculatus_S2_contig9813.17822.1|Name=mRNA_E_fasciculatus_S2_contig9813.17822.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=129bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9813:5239..5367+ (Ectocarpus fasciculatus EfasUO2)
GACAACGCCAACTTCGAAACCCCTCGAGACGCCGTCAACACGTCCTTCCC
GGTGAGGCCGGGGGACATCATCATCCTCGCCACCGACGGCCTGTTCGACA
ACATGGAGCTCGAGAACATCTCCTCGGTG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9813:5239..5367+

>mRNA_E_fasciculatus_S2_contig9813.17822.1 ID=mRNA_E_fasciculatus_S2_contig9813.17822.1|Name=mRNA_E_fasciculatus_S2_contig9813.17822.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=129bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9813:5239..5367+ (Ectocarpus fasciculatus EfasUO2)
GACAACGCCAACTTCGAAACCCCTCGAGACGCCGTCAACACGTCCTTCCC
GGTGAGGCCGGGGGACATCATCATCCTCGCCACCGACGGCCTGTTCGACA
ACATGGAGCTCGAGAACATCTCCTCGGTG