mRNA_E_fasciculatus_S2_contig9810.17817.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9810.17817.1
Unique NamemRNA_E_fasciculatus_S2_contig9810.17817.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9810.17817.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.930e-31
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 PQNPDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKEKRELDEKEAAVALAGADRE 201
            P +PDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKE++ELDEKEAAVALAGADRE
Sbjct:  229 PNDPDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKERKELDEKEAAVALAGADRE 295
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9810.17817.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.930e-3194.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9810contigE_fasciculatus_S2_contig9810:271..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score124.8
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D8LIN4
Model size205
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.apoptotic process
EggNOG OGsKOG2489@1,KOG2489@2759
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842624.9456055-CDS-E_fasciculatus_S2_contig9810:270..4741696842624.9456055-CDS-E_fasciculatus_S2_contig9810:270..474Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9810 271..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9810.17817.1prot_E_fasciculatus_S2_contig9810.17817.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9810 271..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9810.17817.1

>prot_E_fasciculatus_S2_contig9810.17817.1 ID=prot_E_fasciculatus_S2_contig9810.17817.1|Name=mRNA_E_fasciculatus_S2_contig9810.17817.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
PQNPDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKEKR
ELDEKEAAVALAGADREA
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mRNA from alignment at E_fasciculatus_S2_contig9810:271..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9810.17817.1 ID=mRNA_E_fasciculatus_S2_contig9810.17817.1|Name=mRNA_E_fasciculatus_S2_contig9810.17817.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=205bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9810:271..475+ (Ectocarpus fasciculatus EfasUO2)
CCCCAGAACCCCGATTACAAGGACTCGGGAGTCTCCCACCAGACCGCCCA
GCTCAACAGGTATCTCCCCAAGCCTAAGAACAAGGACGGGCACTACCTCG
TAGACTCCAAGAAGTCTGCCGCGGACGCCGCGGTGGAGAAGGAGAAGAGG
GAGTTGGACGAGAAGGAGGCGGCGGTGGCCTTGGCGGGGGCGGACAGAGA
GGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9810:271..475+

>mRNA_E_fasciculatus_S2_contig9810.17817.1 ID=mRNA_E_fasciculatus_S2_contig9810.17817.1|Name=mRNA_E_fasciculatus_S2_contig9810.17817.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9810:271..475+ (Ectocarpus fasciculatus EfasUO2)
CCCCAGAACCCCGATTACAAGGACTCGGGAGTCTCCCACCAGACCGCCCA
GCTCAACAGGTATCTCCCCAAGCCTAAGAACAAGGACGGGCACTACCTCG
TAGACTCCAAGAAGTCTGCCGCGGACGCCGCGGTGGAGAAGGAGAAGAGG
GAGTTGGACGAGAAGGAGGCGGCGGTGGCCTTGGCGGGGGCGGACAGAGA
GGCG
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