mRNA_E_fasciculatus_S2_contig98.17801.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig98.17801.1
Unique NamemRNA_E_fasciculatus_S2_contig98.17801.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI)

HSP 1 Score: 724 bits (1870), Expect = 1.970e-259
Identity = 433/496 (87.30%), Postives = 443/496 (89.31%), Query Frame = 1 
Query:    1 RPQPHIRKAMEMEECWDTDTEVDEVNDDDIDPLLGA---------ASTAAAVPSQSERATAACLAHATGAHEXXXXXXXXXXGDRRGVAASXXAAGRTGGTGGIPRTPNSDANGGATLARLVSTWGPVTAQDGWRQAAAAAGASPASMDGVGSGVVGQVRRGFRDGFNSTRSEAYAHRGASQGGAARGDRVGGARASRRNRNSGGGGAQDGDRGRDPLEDVSEGGGSNNGLLAAGLPSGLGLSLGGGAEASLAGLSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVEPNPPEELLRALVGARITIALLLLLMCHYVVTHLLGIAGFSVGTAVVVVLDQRLWSHSDAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 1461
            RPQPHIRKAMEMEECWDTDTEVDEVNDD+I PLL A         A+  AAVPS SERA AACL HATGAHE XXXXXXXXX         X A G TGGTGGIPRTPNSDANG ATLARLVSTWGPVT+QDGWRQAAAAA ASPASM GVGSGVVGQVRRGFRDGF+S+ SE  AHRG  QGGAARGDRVGG RAS  NRNSGGGGAQDGDRGRD LEDVSEGGG +NGLLA GLPSGL L LGGGAEASL G+SNXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VE NPPEELLRALVGARITIALLLLLMCHY+VTHLLGIA FS+GTA+VVVLDQRLWSHS AQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFA IYLVLKGMQVSFR DRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL
Sbjct:   18 RPQPHIRKAMEMEECWDTDTEVDEVNDDNIGPLLAAQPDLPTTAAATATAAVPSPSERAAAACLPHATGAHEQXXXXXXXXXXXXXXXXXXXSATGPTGGTGGIPRTPNSDANG-ATLARLVSTWGPVTSQDGWRQAAAAAAASPASMGGVGSGVVGQVRRGFRDGFSSSSSETSAHRGVPQGGAARGDRVGGTRASTTNRNSGGGGAQDGDRGRDHLEDVSEGGGGSNGLLAVGLPSGLSLGLGGGAEASLTGMSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VETNPPEELLRALVGARITIALLLLLMCHYIVTHLLGIAAFSMGTAIVVVLDQRLWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKGMQVSFRADRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 511
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BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE)

HSP 1 Score: 497 bits (1280), Expect = 3.080e-166
Identity = 346/688 (50.29%), Postives = 360/688 (52.33%), Query Frame = 1 
Query:  259 GRTGGTGGIPRTPNSDANGGATLARLVSTWGPVTAQDGWRQAAAAAGASPASMDGVGSGVVGQVRRGFRDGFNSTRSEAYAHRGASQGGAARGDRVGGARASRRNRNSGGGGAQDGDRGRDPLEDVSEGGGSNNGLLAAGLPSGLGLSLGGGAEASLAGLSNXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AGVEPNPPEELLRALVGARITIALLLLLMCHYVVTHLLGIAGFSVGTAVVVVLDQRLWSHSDAQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 1461
            G TGG GGIPRTPNS+ANG ATLARLVSTWGPVT+QD WRQAA AA ASPASM G GSGVVGQV+RGFRDGFNS  SEA AHRG  QGG ARGDRVGG RASRRNRNSGGGGAQDGDRG D LE V EGGG +NGLL  GLPSGL L L GGAEASL GLSN    XXXXXXXXXXXXXXXXXX           +GVE NPPEELLRALVGARITIALL+LLMCHY+VTHL+GIA FS+GTA+VVVLDQRLWSH+ AQ                                                                                                                                                                                                                                                                                          RRVNAVVEMAFVLYRCLLPAP+WLEFYGKDSDY A IYL+LKGMQVSFR+DRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL
Sbjct:   87 GPTGGAGGIPRTPNSEANG-ATLARLVSTWGPVTSQDEWRQAAVAA-ASPASMGGGGSGVVGQVQRGFRDGFNSNSSEASAHRGVPQGGVARGDRVGGTRASRRNRNSGGGGAQDGDRGGDHLEAVHEGGGGSNGLLTVGLPSGLSLGLNGGAEASLTGLSNNSGGXXXXXXXXXXXXXXXXXXDEDSSPGVPLESGVEGNPPEELLRALVGARITIALLVLLMCHYIVTHLVGIAAFSMGTAIVVVLDQRLWSHAGAQTLRNRFVLLGVAVTAVVVVALSAMVLSNFPQGEGLLRRLLLVAPKPPALGTVSAVIRTTIVVDIWARLLSVTVKAVLAVVSVPDRDSSGNGSTXXXXXXXXXXXXXXXXXXXXXRVSRHGTGLFARMRSAALYRFRRRFSIRAGGRTEGSGXXXXXXXXXPHPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSSGARRAWRRWLCCSDWFCGGPYRFEGRGRYHVVGGQNDGRHSASGGAGVEXXXXXXXXAGXXXXXXXXXXXXXGAGTVAFLSRTARLRRVNAVVEMAFVLYRCLLPAPIWLEFYGKDSDYLAGIYLLLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 772
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BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.550e-42
Identity = 72/148 (48.65%), Postives = 100/148 (67.57%), Query Frame = 1 
Query: 1024 RVNAVVEMAFVLYRCLLPAPVWLEFYGKDSD--YFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 1461
            ++ A++EM  V+YR LLP  VW ++Y  +S    FA  Y+++KG+ VS R+   V  A    RG L+ G   TP+ +AEAGSP CSIC++ MS P++L C H++C  C+ EWLERE TCP CR++V SSN IP + RDGRT + PQ+L
Sbjct:    1 KLYALMEMTSVVYRSLLPVAVWFQYYQVNSQGQMFATFYIIMKGLLVSRRLQALVEGAMQFIRGGLEHGTFVTPDGLAEAGSPACSICFEPMSHPVMLHCRHMYCETCIEEWLERESTCPNCRSQVSSSNSIPVAFRDGRTMIFPQLL 148
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BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZP7_HETAK)

HSP 1 Score: 149 bits (376), Expect = 3.070e-39
Identity = 68/150 (45.33%), Postives = 96/150 (64.00%), Query Frame = 1 
Query: 1018 QRRVNAVVEMAFVLYRCLLPAPVWLEFY---GKDSDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQI 1458
            +R+V  ++E+AF++YR  LP PVWL++Y   G   D F  +Y  +K   +  R   F+      R+GEL+ G  AT E +AEAG PDCSIC++ +++P+ L C HLFC  CV +WL++E+TCP+CRA V  +N IP   RDG T  VP I
Sbjct:   16 RRKVMGLMELAFLVYRTALPVPVWLQWYTCGGTAPDVFGVLYFFIKNFLIIHRFRVFLAGLSSYRKGELEYGAYATAETLAEAGHPDCSICFEALTKPVQLTCTHLFCEACVGQWLDKEQTCPVCRAAVSRANAIPARYRDGHTPWVPMI 165
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Z2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.250e-33
Identity = 72/159 (45.28%), Postives = 98/159 (61.64%), Query Frame = 1 
Query: 1000 WSHSDAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGK--DSDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLR---DGRTTVVPQIL 1461
            +S    ++R+  ++E+   LYR LLP P+W  +Y    D+  F  +YL LK M  S  +             +L+ G+LA+ +EVAEAG PDC ICYD M  P+LLPC HLFC ECV EWLERE+TCPLCRA+ P+S P+  S R    G T+++P +L
Sbjct:  269 FSKHRIKKRIYVLLELLSKLYRILLPIPMWFAYYESQDDNQVFLGVYLCLKAMVASSYLKVLFLMVKASLTTDLEIGRLASSQEVAEAGHPDCPICYDEMVSPVLLPCGHLFCEECVLEWLEREKTCPLCRADTPTS-PLLASSRGNSSGSTSLLPHVL 426
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BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: RING-type (domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9T4_SELML)

HSP 1 Score: 122 bits (306), Expect = 3.200e-28
Identity = 70/176 (39.77%), Postives = 96/176 (54.55%), Query Frame = 1 
Query:  949 AGFSVGTAVVVVLDQRLWSHSDAQRRVNAVVEMAFVLYRCLLPAPVWLEF-----YGKD-SDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQI 1458
            AG +V   +++        H   Q ++   VE   +L R L+P PVW  F     YG   S     +YL  K   V  ++  F+ A   V R E+  G  A+ +EV  AG   C+IC ++M  P+ L C H+FC +CV+EW ERERTCPLCRA V S+N   RS  DGRT+++PQI
Sbjct:   78 AGMAVKCVLLLTCKSTRGRHFRKQGQLLTAVEYLLLLVRALIPGPVWYRFFLNKEYGNVFSSLTTGLYLTFKLTSVFSKVREFIGAVGLVTRCEVQYGSAASSDEVLAAGDM-CAICQEKMHSPISLRCKHIFCEDCVSEWFERERTCPLCRAVVKSANF--RSFADGRTSLLPQI 250
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BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: E3 (ubiquitin-protein ligase RNFT1-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9658D)

HSP 1 Score: 122 bits (305), Expect = 1.260e-26
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 1 
Query: 1018 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTV 1446
            Q ++  +VE A +LYR  LPAPVW  F+  K+     S     +YL  K   V  ++  F  A   + R E+  G  ATPE+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW ERERTCPLCRA V  ++   RS  DG T++
Sbjct:  281 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVEKVGSFYSALKALSRKEMHYGSYATPEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEWFERERTCPLCRALVRPADI--RSFGDGSTSL 426
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: Putative (RING finger and transmembrane domain-containing protein 1 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TUA1_HELAN)

HSP 1 Score: 121 bits (304), Expect = 2.020e-26
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 1 
Query: 1018 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTV 1446
            Q ++  +VE A +LYR  LPAPVW  F+  K+     S     +YL  K   V  ++  F  A   + R E+  G  ATPE+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW ERERTCPLCRA V  ++   RS  DG T++
Sbjct:  294 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVGKVGSFYAALKALSRKEMHYGSYATPEKVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEWFERERTCPLCRALVRPADI--RSFGDGSTSL 439
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I365_KLENI)

HSP 1 Score: 121 bits (304), Expect = 2.560e-26
Identity = 66/153 (43.14%), Postives = 91/153 (59.48%), Query Frame = 1 
Query: 1018 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKD------SDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQI 1458
            Q ++  +VE   +LYR L+PAPVW  F+  +      S     +YL  K      ++  F+ AA  V R E+  G++AT EEV  AG   C+IC ++M  P+ L C+H+FC +CVAEW ERERTCPLCRA V S+    RS  DG TT++ Q+
Sbjct:  314 QAQLLTLVEYTSLLYRALIPAPVWYRFFLNETYGHLFSSLTTGLYLTFKLTATFDKVCSFISAARTVARREVQYGQVATSEEVLAAGDL-CAICQEKMQSPISLRCHHVFCEDCVAEWFERERTCPLCRAVVKSAGL--RSFGDGTTTLLAQL 463
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQJ7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.680e-26
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1 
Query: 1018 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDS-----DYFAAIYLVLKGMQVSFRIDR-FVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLR----DGRTTVVPQIL 1461
            +R++  ++EM  +  R LL +  W  FY   +     D F   Y+ +KG+ ++ +  R F+ A  +V  G L+ G   + +E+ EAGSPDCSICY+ M +P+ L C+H+FC ECV EW + ER+CPLCRA V S +    +++    DGRT++VPQ+L
Sbjct:  201 KRKLYGLIEMCSIFLRSLLASIPWCSFYQLCASKFMADVFTFAYVFIKGLILATQGRRIFILARSFVTLG-LEFGVYVSHDELVEAGSPDCSICYETMRQPVKLACSHMFCEECVTEWFDHERSCPLCRASVGSGSSEEENVKPQFLDGRTSLVPQLL 357
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig98.17801.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type1.970e-25987.30domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RING-type3.080e-16650.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical1.550e-4248.65protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical3.070e-3945.33protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical2.250e-3345.28protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
RING-type3.200e-2839.77domain-containing protein n=4 Tax=Selaginella moel... [more]
E31.260e-2644.30ubiquitin-protein ligase RNFT1-like n=1 Tax=Eriger... [more]
Putative2.020e-2644.30RING finger and transmembrane domain-containing pr... [more]
RING-type2.560e-2643.14domain-containing protein n=1 Tax=Klebsormidium ni... [more]
RING-type2.680e-2639.87domain-containing protein n=1 Tax=Phytophthora ale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig98contigE_fasciculatus_S2_contig98:12752..19230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score709.1
Seed ortholog evalue1.4e-201
Seed eggNOG ortholog2880.D7FJ26
Model size1464
KEGG koko:K22379
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Exons7
EggNOG free text desc.protein polyubiquitination
EggNOG OGsCOG5243@1,KOG0802@2759
EC2.3.2.27
Cds size1437
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig98.17801.1prot_E_fasciculatus_S2_contig98.17801.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig98 12752..19203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842623.08228-CDS-E_fasciculatus_S2_contig98:12751..128631696842623.08228-CDS-E_fasciculatus_S2_contig98:12751..12863Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 12752..12863 -
1696842623.0994167-CDS-E_fasciculatus_S2_contig98:13698..138351696842623.0994167-CDS-E_fasciculatus_S2_contig98:13698..13835Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 13699..13835 -
1696842623.1095798-CDS-E_fasciculatus_S2_contig98:14331..144001696842623.1095798-CDS-E_fasciculatus_S2_contig98:14331..14400Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 14332..14400 -
1696842623.119395-CDS-E_fasciculatus_S2_contig98:14779..149051696842623.119395-CDS-E_fasciculatus_S2_contig98:14779..14905Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 14780..14905 -
1696842623.1290312-CDS-E_fasciculatus_S2_contig98:17257..174481696842623.1290312-CDS-E_fasciculatus_S2_contig98:17257..17448Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 17258..17448 -
1696842623.1382751-CDS-E_fasciculatus_S2_contig98:17753..185351696842623.1382751-CDS-E_fasciculatus_S2_contig98:17753..18535Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 17754..18535 -
1696842623.1473615-CDS-E_fasciculatus_S2_contig98:19183..192031696842623.1473615-CDS-E_fasciculatus_S2_contig98:19183..19203Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 19184..19203 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842623.155944-UTR-E_fasciculatus_S2_contig98:19203..192301696842623.155944-UTR-E_fasciculatus_S2_contig98:19203..19230Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig98 19204..19230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig98.17801.1

>prot_E_fasciculatus_S2_contig98.17801.1 ID=prot_E_fasciculatus_S2_contig98.17801.1|Name=mRNA_E_fasciculatus_S2_contig98.17801.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=479bp
MEMEECWDTDTEVDEVNDDDIDPLLGAASTAAAVPSQSERATAACLAHAT
GAHEQQQQQQQAPHGDRRGVAASSSAAGRTGGTGGIPRTPNSDANGGATL
ARLVSTWGPVTAQDGWRQAAAAAGASPASMDGVGSGVVGQVRRGFRDGFN
STRSEAYAHRGASQGGAARGDRVGGARASRRNRNSGGGGAQDGDRGRDPL
EDVSEGGGSNNGLLAAGLPSGLGLSLGGGAEASLAGLSNNNNNSGGGGRE
PSSPASSDSSDEDSSSGAGVEPNPPEELLRALVGARITIALLLLLMCHYV
VTHLLGIAGFSVGTAVVVVLDQRLWSHSDAQRRVNAVVEMAFVLYRCLLP
APVWLEFYGKDSDYFAAIYLVLKGMQVSFRIDRFVRAACYVRRGELDRGK
LATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCP
LCRAEVPSSNPIPRSLRDGRTTVVPQIL*
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mRNA from alignment at E_fasciculatus_S2_contig98:12752..19230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig98.17801.1 ID=mRNA_E_fasciculatus_S2_contig98.17801.1|Name=mRNA_E_fasciculatus_S2_contig98.17801.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6479bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:12752..19230- (Ectocarpus fasciculatus EfasUO2)
CGGCCTCAGCCCCACATCCGGAAAGCCATGGAGATGGAGGAGTGCTGGTG
AGACCCAGTTGAAGGACACATCATTGTCCTGTCACGGATACTCTCTCGGG
AGGTCTGCCACACTTGCCACATGAATGAAAAGCACAGCCGGAGCATTTTT
CGTCTACATTTCTCCCGTTTTTCTCCGGTCTTCTCTTCTCCCCCGCCTCG
AGAGCAACGTAGCAACTAGTGAACACGAGTTACTTCAACGTCATGTAGAC
CTTTAGCAATTGCGCTCGCGCTCGAGCCAAGTAGTGAAACCGCAGTTGTC
GTTTATTTGCCCGCATTTTGTTTCCATGTTTTTTTTCTTCTCCATTCTCC
ATTCTCCATTCCTCAAGGAAAATGCCGGTTCGACGCCAATCCTTCCGCAC
ACCGCCATGTGTACGTGTGTAAACTTGCGGAGAACGGAAAAGACTTCAGC
ACATGCCTTTCGACTGCCTTGTGGTTATATCTTGAACGGGTAGTATTTCT
GTGTGTACGTATATTTTCTAAAAAACTTGCCGAGAACTAACGCCCCCCAA
AACGCGCTCATGCCGCACTACTGCTGTTACTACTGCTGTAAGCACTTGTA
CCACGACTACTGTGTCCGGTCGGCGAGGGATTGCATTGGACCAACATAAC
CCCCCACCCCCTTAAGTCTGCCCCCCGTTCAACAACACGACACAGGGATA
CCGACACGGAGGTAGACGAAGTCAATGACGATGACATCGACCCTCTCCTA
GGAGCGGCGTCAACAGCAGCAGCGGTGCCATCACAGAGCGAAAGGGCCAC
GGCGGCCTGCTTGGCCCACGCGACCGGCGCCCACGAACAGCAGCAGCAGC
AGCAGCAGGCTCCACATGGTGACAGAAGAGGTGTTGCTGCTTCTTCTTCT
GCCGCTGGACGAACTGGTGGCACCGGCGGCATTCCTCGCACCCCGAACTC
TGACGCTAACGGCGGGGCTACGCTTGCGCGACTAGTGTCCACATGGGGGC
CGGTGACCGCACAGGACGGCTGGCGACAGGCCGCCGCCGCCGCCGGCGCA
AGTCCTGCCTCCATGGATGGCGTCGGCAGCGGTGTTGTGGGCCAAGTGCG
GCGTGGGTTTCGTGATGGATTTAATAGCACTAGGAGTGAAGCTTATGCGC
ATCGTGGCGCCTCGCAAGGCGGAGCAGCAAGAGGAGACCGCGTTGGCGGC
GCGCGAGCCAGCAGAAGGAATAGGAACTCTGGAGGGGGGGGAGCGCAAGA
CGGGGACAGGGGTAGGGATCCTCTCGAGGACGTGAGTGAGGGGGGGGGCA
GCAACAATGGTTTACTGGCGGCGGGCTTGCCTTCGGGCTTGGGCTTGAGC
TTGGGTGGAGGGGCGGAAGCGAGCTTAGCGGGGCTGAGTAACAACAACAA
CAACAGCGGTGGCGGCGGTAGAGAGCCGAGCAGCCCGGCCTCCTCGGACA
GCAGCGATGAGGACTCTTCTTCCGGTGGTGAGAAAAATCTTGTCATATTA
CTCACGCCTGTACCTTTCTTTCCCAACGTGTCCCTGGTTCTCGTTCGACT
AAGTTTAGGAATAGAACATGGAGGGGGTACGCAGACCCTATCATCCCTAA
CCCTACCCCTAACCCCAACTTCCCCGATTGTATGCTTTATCTTTATCCAA
CATGTTTACTTAATAGAGAAATCCTGCGAAGGCTGCTGTCTCGTTATGGG
ATGGCGTTGCCTATTGAGTGATCTATTTTTTCTTGTGCTGGTGGCTCCCT
TCACTTCGCGCTGCTGTTTTTCCTGCTGGAAGCAGGAGTGGAACCCAACC
CGCCGGAGGAACTCTTGAGAGCTCTGGTGGGCGCTCGCATCACGATCGCC
CTGTTACTGCTGCTCATGTGTCACTACGTCGTGACACACCTCTTGGGCAT
CGCTGGATTCAGCGTGGGCACAGCTGTCGTTGTTGTGTTGGACCAACGAC
TCTGGTCCCACTCTGACGCACAGGTGAGCGAACTAATCCTGATGGTTCAT
CTCTACACTAGTTTACCCTCTCTCTTTGTCCCTACCCCCCGTAGTGCAGA
GGAGCGTTTCTGGAACGGCTTGAAACTCCCGAACTTTCCGCCGGCACCGC
GTTTGGCACTGCTCTCCTCTCCTTGTGCCCAGAGCGAGCTGCTCGGCTCT
AGACCGGTAGCTGTTCCATGTTTCGACGATTAAGTAGGAGGCTGCAGCAG
TTGCGGGTCTAATAGCAATCTAACCTCCGGACGTGACACTCCCCCCCCCC
CCCCCCCCTGCTCATCCGTACAGACCCTACGGAATAGGTTTGTGCTTATG
GGCGTGGCAGTGACAGCGGTGTTCGTTGTGGCCTTATCGGCGACGGTCCT
CAGCAACTTCCCACAAGGAGGTACGGAAGCCGATTCGCCATCTCCCGTGT
TCTGTCCATCAACAAATGATATCTATGGTCTGCTAGGTGGCAACCCCTTG
CGTGTTGTGACTGCTGTAGCTCGCCCGACAACAAAATTGATTGGGCGGAG
GAGGGATCGACACGAGACCGCTTATGCCGGGTTTGCAACTGGTGGAAGTC
ACGTCTACGAGTGCGCTTTTTGCGGCCTCTCTTTTGATGCGTACGGTAGG
AGGCGAAGGGTGCGTACCGGTATACACATGTACTACTTACACGAGACCAA
AAACGTGCATTTCTTCGCCCGATTTCAACCCGCCCCCTTTCCCCGCAATA
TTCGACCTGTCTGTCTCTGGCCGACCCCTCCCGACCCGATCAAATCACCA
CTTAACGGACGGCAACTGCGACGACCAACTCCTCCACACGACAACAGAGG
GGCTGCTTCGAAGGCTGCTCTTGGTGGCTCCGAAGCCGCCGGTCCTGGGC
ACCGTCTCCGCCGTGATCCGCACCACGATCGTGGTGGACATCTGGGCCCG
CCTCCTGAGCGTGACGGTCAAGGCCGTCCTGGCCGTCGTCTCCGTGCCCG
ATCGCGACAGCAGTGGTAACGGTAGCACCAGTGGCAACGGCAACAGCAGT
GGCAATGGTAGTATCAGCAGTGGCGGCGGCGGCGGGAGGGTCAGCCGGCA
CGGCACCGGGCTGTTCGCCAGGGTGCGGTCCGCGGCCTCGTACCGCTTCC
GCCGCCGCTTCGGCATCCGGGGAGGCGGCAGGACGGAAGGGAGCGGGGGG
GGGACACACAGCAGAGAATCCCCGCACCCGCGGGCGGCGGCGCGGAGCTC
GTCGTTCGACGCCAACGAAAGCAGTGGCGGCGGCGGCAGCGGTATCAGCA
GCAGCGGCAGCGATGCCGGCGGCGGCGGGGGAGGAGGCCGGCTATCGAGC
GGCGCGCGGCGCGCGTGGAGGAGCTGGCTGTGCTGCTCGGAGAGGTTTTG
CGGCGGGCCGTACCGGTTCGGGGGCAGGGGGCGGTACAACGTCGTTGGCG
GGCAGAACGACGGGCGGCATTCGGCATCAGGGGGTGCCGGGGTCGAGGGG
GGGGGAGGTGATGGGGGTGGGGCCGGGACGGTGGCCTTCCTCAGCCGGGC
CGCTAGACTGGTGAGGCACGGGGCTGGATTCGGCGTGACGAGGAGGAGCA
GAAAAAGCTTTTTTTTTCCCACGCGCGGCGACATTCTATCGGTTGACACC
AGAATGCTGCTTCCCAGAAAAATTTCAGATGAACCAAGCGGAACGCGTGA
TTTGTCAGGACAGCCTTTTTTTCGTGTCTGATTCAGCTGCTGGGCAGCAC
AGGGTTGTGGTGGTGCTGGTGCGCTGTATGAAACCAGTCTGCCTGTGGCA
AAGAACATGGTGTTTTTGCGGGCATGAGCACGGTTCCTGTATTCCCGTTG
TTCAACCCGTTGAGCACACACCGAAACTGGTATGAATTGCCCCTCTCGGT
AACACTGCCGTAGGTCGGTAGAATTCGCTTGCCTGGGAAAATAATCTACT
GTAGGTGCGAACGCTTTCGACGAAGGTGTCACTGGCCGTGAGAATGATGA
CTCGATCGACTCGAGAGGATCCTGCGAAGCCCCACTGAGCTTATCTCCTT
CTTGTATCCCCCCCCGCCCCACCTCCTCTCAGAGAAGTTTCACTCTTTTA
TGCTAACTGGTCACGGTAGCCTTTCCCTTCTTTTCGAGAGTATTCGTTGT
CCTCTTATCGGATGTCGAAGGCAAACAACCTGTACCCCCCCCTTCTCGTT
ATGCCCCGACTCGACGTGCCCCCCTACTCGGCTTTGGAGAGGCAGATTGT
CCGATCATGATAACGACACCCGTGTGATGGATACTCGGGGGCGAGCGACG
ATGAACGATAACACCGCGCCGTCAACGTTTGCTGACGCCCAACCTCACGC
TTTAACCTCACGCTTCATTTCGCAGCGGAGGGTGAACGCCGTCGTGGAGA
TGGCGTTCGTACTCTACCGGTGCCTTCTGCCGGCACCTGTCTGGCTGGAG
TTCTACGGCAAGGACAGCGACTACTTCGCGGCGATTTATCTCGTCCTCAA
GGTAATGTAAACCTTAATCTCCCCCAGTCCCTCGTTCTCTGCTTGTTTCT
CCCCGCCGCTTTCCCCCTGCTGTAGGCGCGTTGCTGTTCTGAGATGGCCG
TCATGCATGCTTTGCTAGCTTGCCGTTCTGGCCTGTTTCGCTACCCTCAA
GAGGACGGCTAGTGCAGGGCAGGCTTGCCGGTCTGTACATCCATCCTGAT
TCGCTAGGGTTCTTGGCAGGGGGAAAGGCTAGCAAACCTCCCGTAGAGTG
ATCTTTTGTAGATGATAAACCAACGCTCCTGACCTTTTTGAACCCGCCAA
CGTGCTGTCGTTCATGTTGTGCTGCTGCTGCTGTGTCGTCTTGTTGTCCA
TTTTCTGTCCGCGGCTGGATCACCGAAAAGGGCATGCAAGTCTCGTTTCG
GATAGATCGGTTCGTCAGGGCGGCATGCTACGTTCGAAGGGGGGAACTGG
TGAGCGACATACAAATATCGTACTAATTGTTGTTCGGATCGACGAAGCAT
ACACACATGCGTTATGGCAGCCGTGGCTCCGGCATCGCCGCCGTCTACTC
CACCGCTACCTGTGTTGGGATGTCTTTGCTTCCCGTCGCACGCTGCTGCA
GTCTTTTTCTCCTCAGCGCAAGGTTTTCCTTTCAAGCACGGCATTTTCGC
CGGCTTACTATCGCCCTCACTGAACATCCGCTGACTCAGCGCGAGTATGT
AGTGTTTTGATCCTTGTTCCGCCGCATGACTTGCACAACAGCGGTAACGG
CGGAACAGCAGTAGACGCCACTTCCGCAGCAGTGTCTATCGTGGCGTGCC
GGATGCAATACAGCGAGCTTCCTTGGCTCTCACCCACCTGCATCCATCCA
TGCTTTACTCTCACAAGTCAGAGCTCCTATAAGTCGCTTTCGGCGGGTTG
GTCCACCTTTCCGTAAATTCTCTTTCGTTTTTTTTTCGCGTATAGGATCG
AGGGAAGTTGGCCACGCCGGAAGAGGTAGCCGAGGCCGGCTCGCCGGACT
GTTCCATCTGCTACGACCGGATGAGCCGGCCGCTGCTGCTTCCCTGTAAC
CACCTCTTCTGCGGGGAGTGCGTGGCCGAGTGGTGAGTGAGGGGCCTGCG
AGCAGCTGCCCTGCTGCCGCACCCGTACCGATAGATGCTTTCGGCAGGGG
ACACAACCCGATCATGTTTGCAGCTTTGACGAGAATCGTATTGTACGCGG
GGGCTGGTCGCGGTTGTGGAGGTGTGTGTGTGTGTTCGTCGTCGGCAGCA
ATATGGGTGAGTGATGCTTCCGCTACATGTGCACCTTCGTGAGTATTTAG
AGATTAAGAGTGTGTCTCAGGGCTCTCTGTGTACGTGACGGAAATATCCA
CTCAGCCAGCTGCCCCACCCAATGGGACGCAAAACCATGTTTGGACTGTG
GGGTGGTGCCTCGCCGGCACCGCTTGCTTGCGCGAGGCACCACCCACCCC
CTCTCCGAATGAGTCATGTGCGCAAGCTATGTGCTCAAGCTATGTGCTCA
AGCTACTGTATGTGCTCAAGCTATGTGCTCAAGCTCTCGTGCCGTCCTGC
TCTACGCATGTCCTCCCGTCGTCTTCGCCCCAGCAAGTTACAGTACCTCC
TACCTTCATCTGGACGTCGATGTTTTCCTGTTGGTGTATTCAATAGTTCC
ACAGTTCGTGAATCATAAAGCGTGTTTGTGGTGCTAAAATGTTAACTGCG
GACGGTTTTCATGATCTTTAATTCCTCCCACGCCGCAACACGTGTCCATC
TTCAATCCTCATTTCGTCCTGTGTGGTTGTTCCCTTGCCGTTCACTCTCC
CCCCCCCCCTCTCTGTCTCTATCTCCGTCTCCGCCCCTCCCTGCCCCCCC
CCCTCTCTCTATGCCCCCCCTCTCTCTGCTTTTCCTCCTTTAATCTCTGC
GCGCATCCCATCGTCAGGCTGGAGCGAGAGCGCACGTGCCCCCTCTGCCG
CGCCGAGGTGCCGAGTTCCAACCCGATTCCTAGATCCCTGCGAGATGGCA
GAACAACCGTTGTACCGCAGATTCTATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig98:12752..19230-

>mRNA_E_fasciculatus_S2_contig98.17801.1 ID=mRNA_E_fasciculatus_S2_contig98.17801.1|Name=mRNA_E_fasciculatus_S2_contig98.17801.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1437bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:12752..19230- (Ectocarpus fasciculatus EfasUO2)
ATGGAGATGGAGGAGTGCTGGGATACCGACACGGAGGTAGACGAAGTCAA
TGACGATGACATCGACCCTCTCCTAGGAGCGGCGTCAACAGCAGCAGCGG
TGCCATCACAGAGCGAAAGGGCCACGGCGGCCTGCTTGGCCCACGCGACC
GGCGCCCACGAACAGCAGCAGCAGCAGCAGCAGGCTCCACATGGTGACAG
AAGAGGTGTTGCTGCTTCTTCTTCTGCCGCTGGACGAACTGGTGGCACCG
GCGGCATTCCTCGCACCCCGAACTCTGACGCTAACGGCGGGGCTACGCTT
GCGCGACTAGTGTCCACATGGGGGCCGGTGACCGCACAGGACGGCTGGCG
ACAGGCCGCCGCCGCCGCCGGCGCAAGTCCTGCCTCCATGGATGGCGTCG
GCAGCGGTGTTGTGGGCCAAGTGCGGCGTGGGTTTCGTGATGGATTTAAT
AGCACTAGGAGTGAAGCTTATGCGCATCGTGGCGCCTCGCAAGGCGGAGC
AGCAAGAGGAGACCGCGTTGGCGGCGCGCGAGCCAGCAGAAGGAATAGGA
ACTCTGGAGGGGGGGGAGCGCAAGACGGGGACAGGGGTAGGGATCCTCTC
GAGGACGTGAGTGAGGGGGGGGGCAGCAACAATGGTTTACTGGCGGCGGG
CTTGCCTTCGGGCTTGGGCTTGAGCTTGGGTGGAGGGGCGGAAGCGAGCT
TAGCGGGGCTGAGTAACAACAACAACAACAGCGGTGGCGGCGGTAGAGAG
CCGAGCAGCCCGGCCTCCTCGGACAGCAGCGATGAGGACTCTTCTTCCGG
TGCAGGAGTGGAACCCAACCCGCCGGAGGAACTCTTGAGAGCTCTGGTGG
GCGCTCGCATCACGATCGCCCTGTTACTGCTGCTCATGTGTCACTACGTC
GTGACACACCTCTTGGGCATCGCTGGATTCAGCGTGGGCACAGCTGTCGT
TGTTGTGTTGGACCAACGACTCTGGTCCCACTCTGACGCACAGCGGAGGG
TGAACGCCGTCGTGGAGATGGCGTTCGTACTCTACCGGTGCCTTCTGCCG
GCACCTGTCTGGCTGGAGTTCTACGGCAAGGACAGCGACTACTTCGCGGC
GATTTATCTCGTCCTCAAGGGCATGCAAGTCTCGTTTCGGATAGATCGGT
TCGTCAGGGCGGCATGCTACGTTCGAAGGGGGGAACTGGATCGAGGGAAG
TTGGCCACGCCGGAAGAGGTAGCCGAGGCCGGCTCGCCGGACTGTTCCAT
CTGCTACGACCGGATGAGCCGGCCGCTGCTGCTTCCCTGTAACCACCTCT
TCTGCGGGGAGTGCGTGGCCGAGTGGCTGGAGCGAGAGCGCACGTGCCCC
CTCTGCCGCGCCGAGGTGCCGAGTTCCAACCCGATTCCTAGATCCCTGCG
AGATGGCAGAACAACCGTTGTACCGCAGATTCTATGA
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