mRNA_E_fasciculatus_S2_contig98.17800.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig98.17800.1
Unique NamemRNA_E_fasciculatus_S2_contig98.17800.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig98.17800.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9N5_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 1.220e-174
Identity = 272/295 (92.20%), Postives = 281/295 (95.25%), Query Frame = 1 
Query:    1 MASTSGEAEEY--DSSDVTGSEEDL-SPNSKKGNXXXXXXXK-----ALDRSQAIVKWAGGEAASTGVSAAMVAAGITTLVAPTVAVIVLVGHVIVRGSIRAVKKKLKVRAEQKAHLEQLNLTESTARSSSGHFTVVLNGVGPNGEFNSFVSPNDDASYGAVSPGHLKGVSKLISGATNCNVRDMGGFTEGAAVPFGVRISMPDVLALMRQSWVYDRFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD 861
            MASTSGEAEEY  +SSD+TGS+EDL S NSKKG  XXXXXX      A+DRSQAIVKWAGGEAASTGVSAAMVAAGITTLVAPTVAVIVLVGHVIVRGSIRAVKKKLKVRAEQKAHLEQLNLTE+TARSSSGHFTVVLNGVGPNGEFNS+VSPNDDASY AVSPGHLKG+SKLISGATNCNVRDMGG+TEGAAVPF VRISMPDVLALMRQSWVY+RFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD
Sbjct:    1 MASTSGEAEEYAYESSDITGSDEDLPSSNSKKGKDXXXXXXXXXXXXAVDRSQAIVKWAGGEAASTGVSAAMVAAGITTLVAPTVAVIVLVGHVIVRGSIRAVKKKLKVRAEQKAHLEQLNLTETTARSSSGHFTVVLNGVGPNGEFNSYVSPNDDASYRAVSPGHLKGISKLISGATNCNVRDMGGYTEGAAVPFCVRISMPDVLALMRQSWVYERFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD 295
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig98.17800.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.220e-17492.20protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig98contigE_fasciculatus_S2_contig98:5250..9825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size864
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004630.1
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842622.9726558-CDS-E_fasciculatus_S2_contig98:5249..53011696842622.9726558-CDS-E_fasciculatus_S2_contig98:5249..5301Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 5250..5301 +
1696842622.9962556-CDS-E_fasciculatus_S2_contig98:7437..76191696842622.9962556-CDS-E_fasciculatus_S2_contig98:7437..7619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 7438..7619 +
1696842623.0123048-CDS-E_fasciculatus_S2_contig98:8356..85031696842623.0123048-CDS-E_fasciculatus_S2_contig98:8356..8503Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 8357..8503 +
1696842623.0238857-CDS-E_fasciculatus_S2_contig98:8739..91081696842623.0238857-CDS-E_fasciculatus_S2_contig98:8739..9108Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 8740..9108 +
1696842623.0384448-CDS-E_fasciculatus_S2_contig98:9711..98251696842623.0384448-CDS-E_fasciculatus_S2_contig98:9711..9825Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 9712..9825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig98.17800.1prot_E_fasciculatus_S2_contig98.17800.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig98 5250..9825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig98.17800.1

>prot_E_fasciculatus_S2_contig98.17800.1 ID=prot_E_fasciculatus_S2_contig98.17800.1|Name=mRNA_E_fasciculatus_S2_contig98.17800.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=288bp
MASTSGEAEEYDSSDVTGSEEDLSPNSKKGNDKKGSKKKALDRSQAIVKW
AGGEAASTGVSAAMVAAGITTLVAPTVAVIVLVGHVIVRGSIRAVKKKLK
VRAEQKAHLEQLNLTESTARSSSGHFTVVLNGVGPNGEFNSFVSPNDDAS
YGAVSPGHLKGVSKLISGATNCNVRDMGGFTEGAAVPFGVRISMPDVLAL
MRQSWVYDRFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQ
VYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD*
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mRNA from alignment at E_fasciculatus_S2_contig98:5250..9825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig98.17800.1 ID=mRNA_E_fasciculatus_S2_contig98.17800.1|Name=mRNA_E_fasciculatus_S2_contig98.17800.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:5250..9825+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCGACATCTGGAGAAGCAGAGGAGTACGACTCGTCGGATGTCAC
AGGTAACGTGTTTTGGTTACCCTTCCAGTGACGCCTACTTGTACCAAGTA
CTTCGTTTCCGAGCAGCACCTTGAAGAACCTGCACACAGACAATGCTCCC
TGTCGTTTTCTCTCACTCCCGCAGAGTTGTTCGCTCCGCGTGTTCGTTAT
GCATGTGTGGTTCTGCACGATCGGCGTGGGTTTTCTCAGACCCCAACGCT
GTACATGGCACACGACAGGAGCTGCCTGCATCGCTCTACACATGCACATA
CCACGCTCGTATAACCTACACTACCCAGCAGTAAGTTTCGGTAAATAAAT
GCGAACTTGTGCGCAGTGTGTTGCGGCTGCTGCTGCTGCTGCTGCTGCTA
GTGCTGCCGCTGCTGCTGCCGCATTACGCTATCCAGCGACAGTTATTCTC
ATGCATAGCGTGTGTTTTCACCGAATATATGCAGTGCCTGCTGTGTGCGA
GTGGACTCCCGTGCATACGTAGTATGCCGTACATGACTCAACCTTTTCGC
AACCACAGCATTCGCCTGTCCTCGCCAGCAGGCGTCCGTCGAGCCACAAC
AACAAGATAAATGCATTAAATGGGACATTCCTCTGATATTCTCCGCACGG
AATGCATGCAGCATGACCTGCTAATCCGACCACCATCATCATCCGTACAA
AAGCGGATCGACACATCACCGTTTTCCCGCCGCAGCTACAGCAGCAACAC
GACACTCGCGTATTTTGTTCGCAGATATCCATAATTATCTGTAACGCAAC
ACGTGTGGTCGACGCGTCGAAGCATGGCCGCATGGCATGGCACAAGAACC
CCAACGAACCCATCTCGCTGGTCGTTTGGCCGCGGACTAATTCATCATGT
ATGTTGTGGAGGGAGTAGAGCCGGGGAGATACCCTTCTCGCACCAATCAC
ACGTCGACTCTCTTAGACAAACGCTATTTGTAGACAGACAGATGACGTAC
AGTAGTAATTGCGTCATAGCACGGCTCTCGGGATATATCCTCTCGAAAGA
AAGAGGGGCGCAGCACAGCAGAACCAGGACATCACAGACCAATACTGCTG
AAAAAAACGAGATAACCAGTACAGCAGCATACAAGACCAGAAGACCGCTG
TAGAGGTCATTGGCAGCCAAAGGCACTCATCATAGGATGCGTCGGGTGTG
ACTCTTGGAGCCCGTTTCCTACTGTGGGCGGCAACAGCGCGGGACGACGC
AAGTCGAACGACCAGCGGGTATGTATGTGGTCGCTGGGTGCTACAAAATC
AACAGACTGTGAGAATAATGATATGCATACTTGTAGGCCACTGCTGTGCA
AACGCACGTTGGCGCAGATCCAATTGGTGAATTTACGCCGACGGGGGTAT
AGAAACGAACCTGAGGGCGGTCGACAAGGACAAGACCTTGACCTGTTGAA
GAGCTTACCTGGCAACCTTAGGTGAACTGGTTCATCGATTGAATCTCTCT
CCTCAGCCTGGTCGGTGGTGTAGGTAGGGTCTTGAATGATCGAGAGTTTG
GCTGGCACCACTAGGGGTCAACAGTCTCATCGATTGGGTCTCTCATTCAT
TCTTGACCACACTCACTCCACTAACAACACCAACACAACCACCACACCGC
CCCATATCCATCTCACCGTCGCACACGTGTTGAAGCAGTACTGGTGCTGC
TGCGGTACATGACTGGCCAGTCTGCGGTCTATCATCTACTGCACGTATAC
TTTACGTAATCTAGATACCTAGATACATATCTTGAGCTTCCCATACAGGC
GCATCCCCAAAACAGAGACAACAACGAGATGCACACACTCGTTAGGGTAT
GGGCGGCCAAAGGCAGATATTGTGGCAAGCTTCGGAAGCGATTTTAGAGC
CCAATCTGCTGCTAGCAGCGGACAGAGACACATGCGCTCAGTCGATAATT
TATCAAGTTCGCATGCCTACAACAAGCAGATACTTGCTGTTGGAAGGTTA
AACCGTCGGAACCATAAGCATGCCGTCAGGAGTTGGAAGTACGCAATAGG
ATAAGGCCCGGACCTAACCCACAAGAAAACACTACAATAGCGTCGTTGCA
CTTCTAGGTTGCATTGGGGCGCTGATTGTGCCCAAGGGAGAAGCAACCAC
CGTGCTCATCGTCGTCGTCGTCGCCTTTTCCTCTCCAGGTTCGGAGGAAG
ATTTGTCGCCGAACAGCAAGAAGGGCAACGACAAGAAGGGCAGCAAGAAG
AAGGCGCTGGACAGGAGCCAGGCGATTGTGAAGTGGGCGGGAGGAGAAGC
TGCCTCGACGGGCGTGTCGGCCGCCATGGTTGCGGCTGGAATCACGACAT
TGGTCGCACCTACTGTAGCGGTGAGGGAGAGAGAGAGAGGGAGAGAGACA
GACAGACAGACAGACAGACAGACAGAGACATGCCGACAGTGTTAGTTGCA
CCACACTACTGTACGCTGTTCTGCCCTACTCCGCCTATTTATTCCCCTCG
ACCTGCACCGCGTAAGAAGCGTCCGTCTCACGACAACAAGGCAAATACGT
GGTTGCCCCTGTGGTACTGCAATACCTTAATATTCTCCCACCCCCTCGTT
GAAATCAATTCTGGACCGATTGAGTTGTGACTGGACGGTCCCACGTGATG
CCTGCCTGCCACCTTGCCACTCTTGGACTCTCCCTTCAAGTAGCGCTTGG
TTTTCCCAAAAAGCAGCAAGCACGTCGACCTTGTGATTGATATGGCCGGG
ACGTGTTTTAACCAAGAGACAGTATGCTTCGCGGCTCCAGCGCTCTATTA
TATACATATCAATTGCAGCTGGTTGTATTGGTCTTGCAGGGGGGTTCGTG
CGAGAAGCGATTAAGCGGAGAAACACACATTGCGAAGGGCATCGATATGT
AGGGATTGGCGGAGGGGGGGGGGTGTTAACATACATGTTTCCTTGAGAGC
CCCGCGCCGCCGAAGCACTAAATAGCCTTCGCTGTCATGCCATATTCCCA
GTGACAAGCCAATCCGATCAAAACTAGGAGCACGAAGGTCTTTCTAACGT
GGTAAATATAAAACCCCCGATTCTATGCTTTACCGGAACGTTTTTTTGTT
GTGCCAGGTGATTGTTCTGGTGGGGCACGTCATCGTCCGGGGAAGCATCC
GAGCGGTCAAAAAGAAGCTCAAGGTTCGAGCGGAGCAGAAGGCACACCTG
GAGCAGCTCAACCTCACGGAAAGCACGGCTCGATCATCCTCGGGGCACTT
CACGGTGCGTCGGGGCAGCTTGGTCTTGGGAGATGTTTGCTCTCTTTGTT
GAGTGTCCCTCGAGCAGTGCTGTGCTCGCTGGACGAACGTGGTTGAGGCC
CTCTGTGTTAGGATAGGGTCCGTCCCACGCCTGTCGCCTCCCCTGAAGCT
GGTCTTCATCTGTCTTGCTTCCTGCATCACTCTCACTCCATTCTCTCCCT
CTCCCCTCACTCACGCACCGATGCATGACGCATGCCCCAGGTGGTGCTGA
ACGGGGTCGGGCCCAACGGAGAGTTCAACTCCTTCGTGTCCCCAAACGAC
GACGCCTCCTACGGGGCCGTCTCGCCCGGCCACCTCAAGGGCGTCTCGAA
GCTCATCAGCGGCGCCACCAACTGCAACGTGAGGGACATGGGAGGCTTCA
CGGAGGGGGCGGCCGTGCCCTTCGGCGTCCGCATCAGCATGCCGGACGTG
CTCGCGCTGATGCGGCAGTCGTGGGTGTACGACAGGTTCTGCCAGACCAA
GTGCGGGACCATGACGGTCGTGGTGCTGCGGTCGCAGCACAGCCGCGGGA
AGGACAAGCTGCGGGTGGCCTGGGAGAACTCTGGCAGCCTGGACTACACC
AAGGCCCAGGTGTGTGTGTGCGTTGGCGCGTTTTTGTTGTTGGCATCGAC
CGCGCTACCCGGGTGGCCAATGAAAAGACGTCGATCTCACAACATGCTTC
TAAGGCCATGGTGTGTGTGTGCATGCGTGCGTGCGGCTGTACGTAAAGTG
TTCCGTAACTTAGCTTCGACCGTGCTATACGCGGTTGACCAATAAAAGAA
TGCCCATTTTGGCGGGATAAGATTCAGCAACAGTTTCTAGTCCGCGTGGT
GTCGTGCATTGGGACGGGGTAGGGGTAGGATATTGCAGGGGTGGGATCGT
TACACTCAGGGGTACTTCTTGTGCGTTATTTTTTGTTCTTTTGGTGGACT
CACTAGTAACCAACTCTACACACGTGCATGCGTCTTCTTTTTGGATCGCA
GCATGAAACCGTCGTGGTTGGAAAGTATTTCACGGTTTCACGACTCCCCC
GCCCAGCAAACAAGGATTCCTCTCCCCCTTATGCATGCTACTTTGAATTT
CTTTCGTATGTTTTGCAGCACGCTGCGCTGCTATGCTGAGGAATCCTTGT
TGTTATCTGAAGAGGAATCCTTGTGCCATCGTTCTGTGAATTGTGTGATG
TATCCGGAACAGGTGTATACGGAAAGGGAGTGGAAGAAGACAAAGTTCGC
CGGCAAGACTAAGACGATGCCCGAGGGAATCGCGGACGTGGACATGGCAC
TCGACAAGACCCTGGTGTTCGACTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig98:5250..9825+

>mRNA_E_fasciculatus_S2_contig98.17800.1 ID=mRNA_E_fasciculatus_S2_contig98.17800.1|Name=mRNA_E_fasciculatus_S2_contig98.17800.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=864bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:5250..9825+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCGACATCTGGAGAAGCAGAGGAGTACGACTCGTCGGATGTCAC
AGGTTCGGAGGAAGATTTGTCGCCGAACAGCAAGAAGGGCAACGACAAGA
AGGGCAGCAAGAAGAAGGCGCTGGACAGGAGCCAGGCGATTGTGAAGTGG
GCGGGAGGAGAAGCTGCCTCGACGGGCGTGTCGGCCGCCATGGTTGCGGC
TGGAATCACGACATTGGTCGCACCTACTGTAGCGGTGATTGTTCTGGTGG
GGCACGTCATCGTCCGGGGAAGCATCCGAGCGGTCAAAAAGAAGCTCAAG
GTTCGAGCGGAGCAGAAGGCACACCTGGAGCAGCTCAACCTCACGGAAAG
CACGGCTCGATCATCCTCGGGGCACTTCACGGTGGTGCTGAACGGGGTCG
GGCCCAACGGAGAGTTCAACTCCTTCGTGTCCCCAAACGACGACGCCTCC
TACGGGGCCGTCTCGCCCGGCCACCTCAAGGGCGTCTCGAAGCTCATCAG
CGGCGCCACCAACTGCAACGTGAGGGACATGGGAGGCTTCACGGAGGGGG
CGGCCGTGCCCTTCGGCGTCCGCATCAGCATGCCGGACGTGCTCGCGCTG
ATGCGGCAGTCGTGGGTGTACGACAGGTTCTGCCAGACCAAGTGCGGGAC
CATGACGGTCGTGGTGCTGCGGTCGCAGCACAGCCGCGGGAAGGACAAGC
TGCGGGTGGCCTGGGAGAACTCTGGCAGCCTGGACTACACCAAGGCCCAG
GTGTATACGGAAAGGGAGTGGAAGAAGACAAAGTTCGCCGGCAAGACTAA
GACGATGCCCGAGGGAATCGCGGACGTGGACATGGCACTCGACAAGACCC
TGGTGTTCGACTAG
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