mRNA_E_fasciculatus_S2_contig9793.17794.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT7_ECTSI) HSP 1 Score: 376 bits (965), Expect = 1.350e-124 Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 1 Query: 19 RENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 639 RENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGY+LPSVPSTTPVSAPVAVEEDEDARALRELEASMAM Sbjct: 33 RENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 239
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ84_9PHAE) HSP 1 Score: 258 bits (659), Expect = 3.790e-80 Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 1 Query: 208 MNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 639 MNMQTFNAMRSGAKAM+ ARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVP+GY+LPSVPSTTPVSAPVAVEEDEDARALRELEASMAM Sbjct: 1 MNMQTFNAMRSGAKAMEGARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPQGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 144
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Snf7-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA0_9STRA) HSP 1 Score: 233 bits (595), Expect = 3.550e-69 Identity = 146/220 (66.36%), Postives = 164/220 (74.55%), Query Frame = 1 Query: 7 TRQHRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAA-----------PQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDARALRELEASM 633 T + RE H+QKKIKAQLL+AKAKS DK+GALFALKRKKMYE E+NK+NGAR+TLE Q IALEGSN N+QTF AM SG KAMQ ARG+LDVD VD VMDDI++EMDIA+QIG+AIARPA+ LFDDD LL EL +EEA++EE LLA PAVP P+A P G QP A S G DLPSVP T V P A EEDED RALRELEASM Sbjct: 31 TLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGS-SGMDLPSVP-TGDVRVPAA-EEDEDLRALRELEASM 246
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q0_9STRA) HSP 1 Score: 175 bits (444), Expect = 2.910e-47 Identity = 109/209 (52.15%), Postives = 143/209 (68.42%), Query Frame = 1 Query: 19 RENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 639 RE+HI+KKI+AQL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NMQTF A+R+GA M+ G+++VD VDD+MDDI++EM A++IG AI++P + L+DDD L ELDML E DLE+QL A +PA Q PA A + + P PS + V+ + D D LR LEASMAM Sbjct: 36 RESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAA----HQQPAPAQPARVPAQAPATAASMFTFPEAPSHAVTNIKVSGKADADELEELRRLEASMAM 240
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS87_9ARCH) HSP 1 Score: 175 bits (443), Expect = 3.190e-47 Identity = 110/210 (52.38%), Postives = 144/210 (68.57%), Query Frame = 1 Query: 19 RENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLL--APPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPS--TTPV-SAPVAVEEDEDARALRELEASM 633 RE HI KKI A L +AK KS KDK GALFALKRKK+YE EV KL GAR+T+E+QI++LE +++N++TF AM++GA AM+ RG +D D+VDDVMD + +E DI + I +AI+RP DLF+D+ LL+EL L+ ++E + PA P A P PQ V ++ P+VP+ +PV S PVA EEDED RALRELEASM Sbjct: 36 REEHINKKIDASLQEAKLKSQKKDKNGALFALKRKKLYEAEVAKLQGARITMETQILSLESASVNIETFKAMKTGANAMKAMRGDIDADKVDDVMDALAEEKDIQDAISEAISRPGQDLFNDEELLDELAELDALEMEASVANTVAPAAPVAPP--PQSV-------------FNFPAVPTKAVSPVPSKPVAHEEDEDERALRELEASM 230
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK50_9STRA) HSP 1 Score: 168 bits (426), Expect = 6.870e-45 Identity = 102/211 (48.34%), Postives = 134/211 (63.51%), Query Frame = 1 Query: 7 TRQHRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 639 T + R+ H+ KKI+ QL +AK K + KDKRGAL+ LKRKKMYEGE+ K+NGAR+TLE Q+IA+EG+ N +T AM +G AM AR + VD V ++MDDI DE++ A I +AI+ PA+ + DD+ LL EL+ LEE +LE QLL PAVP DLP VP+ TP +ED D +ALRELEA+MA+ Sbjct: 34 TLEKRQVHLDKKIEQQLAEAKVKIAKKDKRGALYCLKRKKMYEGEIEKINGARLTLEQQMIAIEGTVTNSETVKAMTAGKDAMAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELELESQLLDAPAVPAT--------------------AIDLPDVPTATPEIPVQQNQEDADTKALRELEAAMAL 224
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDW8_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.490e-44 Identity = 106/213 (49.77%), Postives = 140/213 (65.73%), Query Frame = 1 Query: 1 LRTRQHRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDL-FDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDARALRELEASMA 636 L T + RE H+ KK+ AKAK + KDK+GALFALKRKKMYEGE++K+NG++MTLE+QI++LE + NMQTF AM+ GA AM + R + DVD VDD+M DI++EM+IA++I AIA+P D + DDD LL+EL LEE DLEE+L+ PA GV +P +PS P+ P +E+ED AL+ELEA MA Sbjct: 37 LLTLEKREEHLFKKMDEMQAQAKAKMAKKDKKGALFALKRKKMYEGEIDKINGSKMTLETQIMSLESNVQNMQTFQAMKQGANAMANVRKQADVDNVDDLMADIQEEMEIAQEISTAIAQPIDGVGVDDDELLDELKELEELDLEEKLMEIPA----------GVNKP----------LKMPSAPTAKPA------QEEEDEAALKELEAMMA 223
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GI76_9STRA) HSP 1 Score: 166 bits (420), Expect = 6.840e-44 Identity = 108/220 (49.09%), Postives = 148/220 (67.27%), Query Frame = 1 Query: 1 LRTRQHRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPAD-DLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPS------TTPVSAPVAVEEDEDARALRELEASMAM 639 L T + RE HI K+ +QL +AK KS+AKDKRGA+FALKRKKMYE E+ KL GARMTLE+QI+ LE +++NM+TFNAMRSGA M+ G++ VD VD++MDDI++EM A++I AI++P +L+DDD L EL+ +EE +EE + PAV AR + V + +P Y+LP P+ T P+ V E++E+ ALR LE+SMAM Sbjct: 30 LDTLEKREQHICTKVSSQLQEAKKKSAAKDKRGAIFALKRKKMYENEIEKLQGARMTLETQIMTLESAHVNMETFNAMRSGAGQMKAIHGQISVDTVDNIMDDIQEEMATADEISRAISQPVGTELYDDDELEAELEAMEELSVEE---SKPAVAEAR-------KPSKVTNTPIP-AYNLPEPPTHKVENRTNPI---VGAEDEEELEALRRLESSMAM 235
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYN0_HETAK) HSP 1 Score: 166 bits (420), Expect = 7.040e-44 Identity = 101/214 (47.20%), Postives = 140/214 (65.42%), Query Frame = 1 Query: 1 LRTRQHRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEED-EDARALRELEASMAM 639 + T RE I KI Q +AKAK KD+RGA+F LKRKKMYE E++KLNGA++ LE QI ALEG+++N + F A R+ A++ ARG +D D V++ +DDI +EM++A +IG+AI+RPA +LF+D+ LL+EL LEE +EE LLA PA P P A AVAE YDLP+ P+ ++ + + D +D ALR LEA +A+ Sbjct: 29 IETLDKRETFIAAKIVQQTNEAKAKLKKKDQRGAMFCLKRKKMYEKEIDKLNGAKLQLEQQIFALEGAHINTEAFEASRAAVGALKAARGNIDADTVEETLDDINEEMELANEIGEAISRPAQELFEDEELLDELRELEELGVEEDLLAAPAAPVRAPPAA------AVAEEAKQPAYDLPAAPTGAVAASAIQGDVDADDLDALRALEAELAV 236
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2J5_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.200e-43 Identity = 109/206 (52.91%), Postives = 138/206 (66.99%), Query Frame = 1 Query: 19 RENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYDLPSVPSTTPVSAPVAVEEDEDARALRELEASM 633 RE HI KI AQ +AKAK + KDK+GAL +KRKKM+E E+ K+ GARMTLE Q++ALE + MNMQTF AM G +A++ ARG +D D + D MDDI++EMD A+ I A+ P DD L DDD LL EL+M+E+ DLE++LL PP+VPT+ P AE + DLP P T+ V VE+DE A ALRELEASM Sbjct: 84 REAHIGTKITAQTAEAKAKLAKKDKKGALICMKRKKMFENEITKIQGARMTLEQQMMALENAAMNMQTFGAMNEGKQALKAARGGMDADTIGDTMDDIREEMDEADAIATALGAPLDDALEDDDELLAELNMMEQDDLEDKLLNPPSVPTSTPVG--------AAEDIL----DLPDAP-TSQVVVDGDVEDDELA-ALRELEASM 275 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9793.17794.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9793.17794.1 >prot_E_fasciculatus_S2_contig9793.17794.1 ID=prot_E_fasciculatus_S2_contig9793.17794.1|Name=mRNA_E_fasciculatus_S2_contig9793.17794.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=172bp MYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLback to top mRNA from alignment at E_fasciculatus_S2_contig9793:1045..3918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9793.17794.1 ID=mRNA_E_fasciculatus_S2_contig9793.17794.1|Name=mRNA_E_fasciculatus_S2_contig9793.17794.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2874bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9793:1045..3918+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9793:1045..3918+ >mRNA_E_fasciculatus_S2_contig9793.17794.1 ID=mRNA_E_fasciculatus_S2_contig9793.17794.1|Name=mRNA_E_fasciculatus_S2_contig9793.17794.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=516bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9793:1045..3918+ (Ectocarpus fasciculatus EfasUO2)back to top |