mRNA_E_fasciculatus_S2_contig9791.17793.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI) HSP 1 Score: 511 bits (1317), Expect = 6.210e-167 Identity = 318/342 (92.98%), Postives = 324/342 (94.74%), Query Frame = 3 Query: 3 KDSRSMEAKISQAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFEAPRGCPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRGGSAASGAGAGGAGIVSAARAEELAVEARGAEDAVRAARLQKKDAEECLKKLHARSKQLQACTLIPKLEMRLQGVGASEEQYRDQMEALQAQCNLTPEAEAQLKNLTKDLTRDE 1028
KDSRSME +ISQAEE XXXXXXXXXXXXXXXXXXXXXXXXXXXX ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRF+AP GCPRLFDLLEVSEPRFRTAFYLAL DTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRGGSA AGIVSAARAEELAVEAR AEDAV+AARL+KKDAEECLKKLHARSKQLQ TLIPKLEMRLQGVGASEEQYR+QMEALQAQC LTPEAEAQLK LTKDLT+DE
Sbjct: 552 KDSRSMETQISQAEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFQAPAGCPRLFDLLEVSEPRFRTAFYLALPDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRGGSAXXXXXXXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQ--TLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDE 891
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX8_9STRA) HSP 1 Score: 183 bits (465), Expect = 7.230e-48 Identity = 99/174 (56.90%), Postives = 122/174 (70.11%), Query Frame = 3 Query: 165 LRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFEAPRG-----CPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
LRALL+AS PG L AG+CGRLGDLGAI A +DVA+S+ G +DN+VV + GA ACV YLREH LGR +F+ILE+LG+L Q F A G PRLFDL++V + +F AFY ALRDTLVA D+ A A AYQ G+ RVVT DG+L++ SGAM+GGG +K G M
Sbjct: 573 LRALLDASKPGQPLATAGLCGRLGDLGAIDAKFDVAISTACGALDNLVVATTAGAQACVAYLREHNLGRTTFLILEQLGYLHGKATQPFRAVAGPSGQPAPRLFDLVQVKDRKFLPAFYYALRDTLVAKDLDEASAIAYQGGQCKFRVVTLDGQLVELSGAMSGGGKRSKSGGM 746
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJE1_9STRA) HSP 1 Score: 180 bits (457), Expect = 8.290e-47 Identity = 96/178 (53.93%), Postives = 126/178 (70.79%), Query Frame = 3 Query: 138 ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFEAPRGCPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
+S A + L++L+ A+ PG L AG+ GRLGDLGAI A YDVA+S+ G +DN+VV++ +GA CV YLR+H LGR +FIILEK+G+L +RF AP PRLFDL+ VSE ++R AFY ALRDTLVA + A AYQ + +RVVT DG++I+ SGAM+GGGN +RG M
Sbjct: 621 QSHATQNRMLKSLMTAARPGLELEHAGLLGRLGDLGAIDAKYDVAISTACGALDNLVVETTQGAQQCVAYLRQHNLGRATFIILEKMGYLRGKCTERFNAP--VPRLFDLVRVSEDKYRPAFYFALRDTLVAKHLDEATNIAYQGKQCKYRVVTLDGQMIELSGAMSGGGNRVRRGGM 796
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: SMC (hinge domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU63_PYTIN) HSP 1 Score: 180 bits (456), Expect = 1.060e-46 Identity = 92/174 (52.87%), Postives = 125/174 (71.84%), Query Frame = 3 Query: 165 LRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFEAPRG-----CPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
L++LL+AS PG L AG+CGRLGDLGAI YDVA+S+ G +D++VV + GA ACV++LR+H LGR +F+ILE+LG+L++ Q+F +G PRLFDL++V + R+ AFY ALRDTLVA D+ A A AYQ + +RVVT DG+L++ SGAM+GGGN + G M
Sbjct: 487 LKSLLDASRPGQPLADAGLCGRLGDLGAIDGKYDVAISTACGALDHLVVATTSGAQACVQFLRKHNLGRTTFLILEQLGYLDSKCSQQFRPVKGPSGQPAPRLFDLVKVKDKRYLPAFYFALRDTLVAKDLDEASAIAYQGSQCKYRVVTLDGQLVELSGAMSGGGNRVRSGGM 660
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein 4 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FLU1_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.910e-46 Identity = 97/179 (54.19%), Postives = 125/179 (69.83%), Query Frame = 3 Query: 138 ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQ-RFEAPRGCPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
+S A + L++L+ A+ PG L AG+ GRLGDLGAI A YDVA+S+ G +DN+VV++ GA CV +LR+H LGR +FIILEK+G+L N RF AP PRLFDL+ VS+ RFR AFY ALRDTLVA + A + AYQ +RVVT DG++I+ SGAM+GGGN +RG M
Sbjct: 511 QSHATQNRMLKSLMNAARPGFELEHAGLVGRLGDLGAIDAKYDVAISTACGSLDNLVVETTHGAQQCVAFLRQHNLGRATFIILEKMGYLHNKCSDTRFHAP--VPRLFDLVRVSDQRFRPAFYFALRDTLVAKHLDEATSIAYQGRSAKYRVVTLDGQMIELSGAMSGGGNRVRRGGM 687
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein 4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4T7_GLOUD) HSP 1 Score: 177 bits (450), Expect = 3.310e-46 Identity = 96/174 (55.17%), Postives = 124/174 (71.26%), Query Frame = 3 Query: 165 LRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFE---APRG--CPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
LRALL+AS PG L AG+ GRLGDLGAI A YDVA+S+ +DN+VV + GA ACVE+LR++ LGR +F+ILE+LG+L + Q+F P G PRLFDL++VS+ +F +FY ALRDTLVA D+ A A AYQ + +RVVT DG+L++ SGAM+GGG TK G M
Sbjct: 2 LRALLDASKPGQPLANAGLFGRLGDLGAIDAKYDVAISTACSALDNLVVATTSGAQACVEFLRKNNLGRTTFLILEQLGYLHSKCNQQFRPITGPSGQQAPRLFDLVQVSDQKFLPSFYFALRDTLVAKDLDEATAIAYQGSQCKYRVVTLDGQLVELSGAMSGGGKRTKSGGM 175
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGX5_9STRA) HSP 1 Score: 178 bits (452), Expect = 3.830e-46 Identity = 97/179 (54.19%), Postives = 125/179 (69.83%), Query Frame = 3 Query: 138 ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLEN-AMGQRFEAPRGCPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
+S A + L++L+ A+ PG L AG+ GRLGDLGAI A YDVA+S+ G +DN+VV++ GA CV +LR+H LGR +FIILEK+G+L N RF AP PRLFDL+ VS+ RFR AFY ALRDTLVA + A + AYQ +RVVT DG++I+ SGAM+GGGN +RG M
Sbjct: 620 QSHATQNRMLKSLMNAARPGFELEHAGLVGRLGDLGAIDAKYDVAISTACGSLDNLVVETTHGAQQCVAFLRQHNLGRATFIILEKMGYLHNKCTDTRFHAP--VPRLFDLVRVSDQRFRPAFYFALRDTLVAKHLDEATSIAYQGRSAKYRVVTLDGQMIELSGAMSGGGNRVRRGGM 796
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TB86_9STRA) HSP 1 Score: 178 bits (452), Expect = 3.830e-46 Identity = 96/179 (53.63%), Postives = 126/179 (70.39%), Query Frame = 3 Query: 138 ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLEN-AMGQRFEAPRGCPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
+S A + L++L+ A+ PG L AG+ GRLGDLGAI + YDVA+S+ G +DN+VV++ GA CV YLR+H LGR +FIILEK+ +L N G RF AP PRLFDL+ VS+ +FR AFY ALRDTLVA ++ A + AYQ +RVVT DG++I+ SGAM+GGGN +RG M
Sbjct: 618 QSHATQNRMLKSLMNATKPGFELEHAGLLGRLGDLGAIDSKYDVAISTACGALDNLVVETTHGAQLCVAYLRQHNLGRATFIILEKMTYLHNKCQGDRFNAP--IPRLFDLVRVSKDKFRPAFYFALRDTLVAKNLDEATSIAYQGRSAKYRVVTLDGQMIELSGAMSGGGNRVRRGGM 794
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DT23_BRELC) HSP 1 Score: 178 bits (452), Expect = 3.890e-46 Identity = 97/183 (53.01%), Postives = 129/183 (70.49%), Query Frame = 3 Query: 138 ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRF---EAPRG--CPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
+S A + L+ LL+AS PG L AG+ GRLGDLGAI +YDVA+S+ G ++N+VV++ GA ACV YLR+H LGR +F+ILE+LG+L++ QRF AP G PRLFDL++V+E +F AFY ALRDTLVA D+ A A AYQ + +RVVT DG+L++ SGAM+GGG + G M
Sbjct: 612 QSYATRNRMLQELLQASKPGKPLERAGLFGRLGDLGAIDGEYDVAISTACGALNNLVVETTSGAQACVAYLRKHNLGRTTFLILEQLGYLKSKYSQRFCAVTAPSGQLAPRLFDLVKVNEDKFLPAFYFALRDTLVAKDLDEASAIAYQGRQCKYRVVTLDGQLVEMSGAMSGGGTRARSGGM 794
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Match: Structural (maintenance of chromosomes protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225WSV9_9STRA) HSP 1 Score: 175 bits (443), Expect = 5.870e-45 Identity = 95/183 (51.91%), Postives = 127/183 (69.40%), Query Frame = 3 Query: 138 ESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLREHRLGRLSFIILEKLGHLENAMGQRFE---APRG--CPRLFDLLEVSEPRFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAM 671
+S A + LR LL AS PG L AG+ GRLGDLGAI YDVA+S+ G ++N+VV++ GA ACV YLR+H LGR +F+ILE+LG+L++ Q F AP G PRLFDL++V++ ++ +AFY ALRDTLVA D+ A A AYQ + +RVVT DG+L++ SGAM+GGG + G M
Sbjct: 514 QSHATRNRMLRELLNASKPGKPLENAGLFGRLGDLGAIDGKYDVAISTACGALNNLVVETTSGAQACVAYLRKHNLGRTTFLILEQLGYLKSKYSQHFRGVTAPSGQQTPRLFDLVKVNDEKYLSAFYYALRDTLVAKDLDEASAIAYQGRQCKYRVVTLDGQLVEMSGAMSGGGKRARSGGM 696 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9791.17793.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9791.17793.1 >prot_E_fasciculatus_S2_contig9791.17793.1 ID=prot_E_fasciculatus_S2_contig9791.17793.1|Name=mRNA_E_fasciculatus_S2_contig9791.17793.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=181bp GRTPGPWRRRLARRKRRWPRLRARFRLLRRPWAEPSPPLKRRRRRESRPQback to top mRNA from alignment at E_fasciculatus_S2_contig9791:630..5419+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9791.17793.1 ID=mRNA_E_fasciculatus_S2_contig9791.17793.1|Name=mRNA_E_fasciculatus_S2_contig9791.17793.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4790bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9791:630..5419+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9791:630..5419+ >mRNA_E_fasciculatus_S2_contig9791.17793.1 ID=mRNA_E_fasciculatus_S2_contig9791.17793.1|Name=mRNA_E_fasciculatus_S2_contig9791.17793.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9791:630..5419+ (Ectocarpus fasciculatus EfasUO2)back to top |