mRNA_E_fasciculatus_S2_contig979.17788.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI) HSP 1 Score: 470 bits (1210), Expect = 2.650e-158 Identity = 338/419 (80.67%), Postives = 346/419 (82.58%), Query Frame = 1
Query: 76 PEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSRGDKKYELVDEEDPRDSGQGGAGXXXXXXMRGVHREASPPRGGGVLAGGRGRGATMPAWMTDLGLMDKLNKKSHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHKKSSXXXXXXXXXXXXXXXX-------SGKRDDRRGYSDSGSDDSG------DRGRVSMNGTGGGGRXXGRDENGSMRRRSXXXGDNGRGGXGRKGRSHSRQR-EXXXXXXXXXXXXXXXXXXXXRGENDRGRFDDAPVAEAVGVGDGGRWKPRGDSDRSQSR 1290
PEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGA+PREQRIALSMKLVNQADGKDLDPSNAEAETDAQR+RPAGGGDRAPVQLEAVFNT CTKCGVHGHLSIDCFSRG KKYELVDEEDPRD+G+GGAG MRGVHRE PP GGG LAGGRGRGATMPAWM DLGL+DKLNKKSHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +HKKS XXXXXXXXXXXXXX SG RD RRGYSDSGSDD DRGRVS NG GGG R RDENGSMRR+S X X S SRQR E XXXXXXXXXXXXXXXXX FDDAP+ EA GVGDGGRWKPRGDSDRS SR
Sbjct: 231 PEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTGNGMRGVHRE--PPHGGGALAGGRGRGATMPAWMNDLGLVDKLNKKSHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----KHKKSGHKXXXXXXXXXXXXXXXXXXXXSSGNRDGRRGYSDSGSDDXXXXXXXXDRGRVSSNGMGGGTRGSWRDENGSMRRQSRSXXXXXXXXXXXXXXSRSRQRGEGGGXXXXXXXXXXXXXXXXXXXXXXXXXFDDAPLREAAGVGDGGRWKPRGDSDRSHSR 643
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH79_9STRA) HSP 1 Score: 167 bits (423), Expect = 2.190e-42 Identity = 104/271 (38.38%), Postives = 140/271 (51.66%), Query Frame = 1
Query: 79 EKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAK------------------------------------VIEVTDGAEPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGG------------GDRAPVQLEAVFNTNCTKCGVHG-------------------HLSIDCFSRGDKKYELVDEEDPRDSGQGGAGXXXXXXMRGVHR--EASPPRGGGVLAGGRGRGATMPAWMT 684
+ LP ++SVH GEV + FG F+ G+RKHGLVH SQ+A YRVEDV D VGD V+ K VI+V +GA PRE ++A+SMKLV+Q+ GKDLDP+N EA+ +A RR GG + P++L AVFNT C+KCG H+S+DCFSRG +KYELV E+ + G+ G M+GV + + PP ++ GRG+ AT+P+WMT
Sbjct: 283 DTLPALYSVHHGEVASVQDFGCFVSAPGHRKHGLVHKSQLAQYRVEDVADAVAVGDKVWVKYQXXXXXXXXXXXXXXXXXXKGGXXXXXXXXXXXXKVIDVQEGATPRESKVAMSMKLVDQSTGKDLDPTNEEAQDEAARRMGGGGXRXXXXXXXXXXAPKGPIELGAVFNTVCSKCGAXXXXXXXXXXXXXXXXXXXXXHMSVDCFSRGGQKYELVTED--LEGGEPAGG------MKGVAKPPDVPPPS----VSMGRGKAATLPSWMT 541
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: Nucleolar (protein of 40 kDa n=4 Tax=Siluroidei TaxID=1489793 RepID=A0A556TPD5_BAGYA) HSP 1 Score: 149 bits (377), Expect = 5.720e-39 Identity = 78/159 (49.06%), Postives = 108/159 (67.92%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVI--EVTDGAEPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSR-GDKKYELVDEED 540
G + LPE++SV +GEV T+GAF+K+ GYRKHGLVH + M++ RV++ +++ VG+ V+ KVI E+TD + ++A SMK VNQ G+DLDP+N AE DA+RRR + LEAV NT C KCG GH + DCFS+ G+K+Y LV EE+
Sbjct: 11 GLDGLPELYSVIRGEVASVTTYGAFVKIPGYRKHGLVHKNDMSASRVDNPSEIVDVGEQVWIKVIGREITDD----KIKLAFSMKAVNQGTGRDLDPNNVMAEQDARRRRQFRDHTSQKITLEAVLNTTCKKCGCKGHFAKDCFSQPGEKQYSLVPEEE 165
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: nucleolar (protein of 40 kDa n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C0580E8) HSP 1 Score: 149 bits (375), Expect = 1.290e-38 Identity = 77/158 (48.73%), Postives = 106/158 (67.09%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSRGDKKYELVDEED 540
G + LP +FS+ KGEVV +T+GAF++L GY+K GLVH S+M++ RVE+ +++ VG+ V+ KVI G E + +++ LS MK VNQ G+DLDP+N AE DA+RRR R + LEAV NT C+KCG GH + DCFS +Y L+ EED
Sbjct: 13 GLDGLPPLFSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEKVWIKVI----GREIQGEKVKLSFSMKSVNQGTGQDLDPNNVMAEQDARRRRMFKDETRNKITLEAVLNTTCSKCGCRGHFTKDCFSTPGSQYALLPEED 166
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: Zinc (finger CCHC-type containing 17 n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WCJ4_CYNSE) HSP 1 Score: 149 bits (375), Expect = 1.320e-38 Identity = 78/164 (47.56%), Postives = 106/164 (64.63%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSRGDKKYELVDEEDPRDSGQ 558
G E LP ++S+ KGEVV +T+GAF++L GYRK GLVH S+M++ RVE +++ VG+ V+ KVI G E R ++ +S MK VNQ G+DLDP+N AE DA+RRR + LEAV NT C+KCG GH + DCFS +Y L+ EED ++ Q
Sbjct: 14 GLEGLPPIYSILKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSASRVEKASEIVDVGEQVWIKVI----GREIRGDKVKMSFSMKAVNQGTGRDLDPNNVNAEQDARRRRQFRDQTGNKITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEEDDKEPQQ 173
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: nucleolar (protein of 40 kDa n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018861AB2) HSP 1 Score: 149 bits (375), Expect = 1.480e-38 Identity = 81/164 (49.39%), Postives = 104/164 (63.41%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSRGDKKYELVDEEDPRDSGQ 558
G E LP +FS+ KGEVV +T+GAF++L GY+K GLVH S+M+S RVE +V VG+ V+ KVI G E ++I LS MK VNQ G+DLDP+N AE DA+RRR + LEAV NT CTKCG GH + DC+S +Y LV EE ++ Q
Sbjct: 10 GLEGLPPLFSISKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSSTRVESAAEVVDVGEKVWIKVI----GREKNGEKIKLSFSMKAVNQGTGRDLDPNNVMAEQDARRRRQFRDHTGNRITLEAVLNTTCTKCGCKGHFTKDCYSAPGLQYALVPEEGDEETQQ 169
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: nucleolar (protein of 40 kDa n=11 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3Q0U9_SALSA) HSP 1 Score: 149 bits (376), Expect = 1.620e-38 Identity = 78/157 (49.68%), Postives = 103/157 (65.61%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSRGDKKYELVDEE 537
G + LP ++S+ KGEV +T+GAFIK+ GYRK GLVH S++++ RVE+V +V VG+ V+ KVI G E R+ ++ LS MK VNQ GKDLDP+N AE D +RRR G + LEAV NT C KCG GH + DCFS +Y+L+ EE
Sbjct: 13 GLDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVI----GREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGRRITLEAVLNTTCKKCGCKGHFAKDCFSAPGLQYDLIPEE 165
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: Zinc (finger, CCHC domain containing 17 n=2 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YY55_9TELE) HSP 1 Score: 146 bits (369), Expect = 2.930e-38 Identity = 76/157 (48.41%), Postives = 104/157 (66.24%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSRGDKKYELVDEE 537
G + LP ++S+ KGEVV +T+GAF++L GYRK GLVH S+M++ RVE +++ VG+ V+ KVI G E + +++ LS MK VNQ G+DLDP+N +AE DA+RRR + LEAV NT C+KCG GH + DCFS +Y LV EE
Sbjct: 13 GLDGLPPMYSIAKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSATRVESASEIVDVGEQVWIKVI----GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALVPEE 165
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: nucleolar (protein of 40 kDa-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BBBA) HSP 1 Score: 148 bits (373), Expect = 4.320e-38 Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query: 94 VFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGAEPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCF-SRGDKKYELVDEED 540
V ++ GEV +++GAF+++ G K GL+H SQ++S V+DV+DV GD VY KVI VTDG +IALSMKLVNQ GKDLDP+ + + D RR+ G R ++LEAVFNT C+KCG GH++ DCF S G K YEL+ EED
Sbjct: 8 VNTIFIGEVATVQSYGAFVRIPGISKQGLIHRSQVSSAPVDDVSDVLNRGDRVYCKVISVTDG------KIALSMKLVNQGSGKDLDPNGVQLQKDELRRKTFVPGTRKKIELEAVFNTTCSKCGTRGHMARDCFKSPGGKIYELLPEED 151
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Match: nucleolar (protein of 40 kDa n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019C8BB30) HSP 1 Score: 147 bits (370), Expect = 5.360e-38 Identity = 76/158 (48.10%), Postives = 107/158 (67.72%), Query Frame = 1
Query: 73 GPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVI--EVTDGAEPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRRRPAGGGDRAPVQLEAVFNTNCTKCGVHGHLSIDCFSR-GDKKYELVDEE 537
G + LPE++S+ +GEVV +GAF+K+ GYRKHGLVH + M++ RV++ ++ +G+ V+ KVI E+TD + ++A SMK VNQ G+DLDP+N AE D++RRR R + LEAV NT C KCG GH + DCFS+ G+K+Y LV EE
Sbjct: 11 GLDGLPELYSILRGEVVSVTEYGAFVKIPGYRKHGLVHKNDMSASRVDNPGEIVDLGEQVWIKVIGREITDD----KIKLAFSMKAVNQGTGRDLDPNNVMAEQDSRRRRQFRDHTRQKITLEAVLNTTCKKCGCKGHFAKDCFSQPGEKQYSLVPEE 164 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig979.17788.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig979.17788.1 >prot_E_fasciculatus_S2_contig979.17788.1 ID=prot_E_fasciculatus_S2_contig979.17788.1|Name=mRNA_E_fasciculatus_S2_contig979.17788.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=431bp GGEGGGGGARGGGGGGGGGRGGGRGPEKLPEVFSVHKGEVVKTETFGAFIback to top mRNA from alignment at E_fasciculatus_S2_contig979:2..4601+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig979.17788.1 ID=mRNA_E_fasciculatus_S2_contig979.17788.1|Name=mRNA_E_fasciculatus_S2_contig979.17788.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4600bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig979:2..4601+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig979:2..4601+ >mRNA_E_fasciculatus_S2_contig979.17788.1 ID=mRNA_E_fasciculatus_S2_contig979.17788.1|Name=mRNA_E_fasciculatus_S2_contig979.17788.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1293bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig979:2..4601+ (Ectocarpus fasciculatus EfasUO2)back to top |