mRNA_E_fasciculatus_S2_contig9780.17779.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 313 bits (803), Expect = 2.780e-97 Identity = 167/233 (71.67%), Postives = 191/233 (81.97%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSASTFPGMEENTTHAPSSASSSRPTSVKLHAAANGRGDSDAAAKNVAD 699
AGKTL+FLSSAVPVVSGLAGLAA+AL GDRYLQTRRVSKICD+APDS DCC+LAR LALQLSDGYVDGTLPT DT+EERG HTTA +GGVE ECGWSQ++ ASPD+A+EEA+MDWF+EEVAD EPN DA+KTT A +AGRKLG +HL+ LLK +GRDCLR TN+ DEKV+VLVG+ILPEAERK ST G +E T H ASS++P S + HAAA D AAKN D
Sbjct: 559 AGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQERTNH---DASSAQPASRQSHAAATRPAAPDGAAKNDLD 788
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 308 bits (789), Expect = 2.090e-95 Identity = 165/233 (70.82%), Postives = 191/233 (81.97%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSASTFPGMEENTTHAPSSASSSRPTSVKLHAAANGRGDSDAAAKNVAD 699
AGKTL+FLSSAVPVVSGLAGLAA+AL GDRYLQTRRVSKICDIAPDS DCC+LAR LALQLSDGYVDGTLPTTDT+EERG+H TA +GGVE CGWSQ++ ASPD+A+EEA+MDWF+EEVAD EPN+ DA+KTT A +AGRKLGK+HL+ LLK +GRDCLR TN+ DEKV+VLVG+ILPEAER+ ST E T H ASS++P S + HAAA D AAK+ D
Sbjct: 532 AGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNH---DASSAQPASRQSHAAATRPAVPDGAAKSDID 761
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 310 bits (794), Expect = 8.700e-95 Identity = 161/218 (73.85%), Postives = 185/218 (84.86%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSASTFPGMEENTTHAPSSASSSRPTSVKLHAAA 654
AGKTL+FLSSAVPVVSGLAGLAA+AL GDRYLQTRRVSKICDIAPDS DCC+LAR LALQLSDGYVDGTLPTTDT+EERG HTTA +GGVE CGWSQ++ ASPD+A+EEA+MDWF+EEVAD EPN+ DA+KTTPA +AGRKLG +HL+ LLK +GRDCLR TN+ DEKV+VLVG+ILPEAER+ ST G E H ASS++P S + HAAA
Sbjct: 744 AGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRERLNH---DASSAQPASRQSHAAA 958
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.680e-65 Identity = 108/137 (78.83%), Postives = 117/137 (85.40%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPA 411
AGKTLKFLSSAVPVV GLAGLAA+AL GDRYLQTRRVSKICDIAPDSA CC LAR LALQLSDGYVDG LPTTDT+EERG HTTA GG WSQ++ ASPD A+EEA+MDWF+EEVAD EPN+ DA+KTTPA
Sbjct: 64 AGKTLKFLSSAVPVVGGLAGLAAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAGGGG------WSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPA 194
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE) HSP 1 Score: 153 bits (387), Expect = 4.750e-41 Identity = 82/138 (59.42%), Postives = 104/138 (75.36%), Query Frame = 1
Query: 286 GWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSASTFPGMEENTTHAPSSASSSRPTSVKLHAAANGRGDSDAAAKNVAD 699
GWSQ++ ASPD+A+EEA+MDWF+EEVAD EPN+ D +KTTPA +AGRKLGK+HL+I+LK +GRDCLR TN+ DEKV+VLVG++LPEA RK T G +E H ASS++P S + HAAA D AAK+ D
Sbjct: 44 GWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDTRKTTPAVQAGRKLGKRHLQIILKAVGRDCLRGTNTADEKVKVLVGIVLPEAGRKVGLTSHGTQERANH---DASSAQPASRQSHAAATRPAVPDGAAKSDID 178
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 150 bits (380), Expect = 4.250e-38 Identity = 89/189 (47.09%), Postives = 113/189 (59.79%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSAST 567
AGK LK LS+AVP+V GL G+A++AL GDRY+QTRRV KI DIA D+ +CC LAR+LA GG GWSQ A PD A + +M+WF +EVA+ EP D A +TTP E+AGR+LGKKHL+ LL +G L SI+EKV++LV +LPE E + ST
Sbjct: 845 AGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXX-----XXXXXXXXXXXGGG----GWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVST 1024
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 145 bits (365), Expect = 4.340e-36 Identity = 83/189 (43.92%), Postives = 108/189 (57.14%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSAST 567
AGK L LS+AVP+V GL G+AA AL GDRY+QTRRV+KI DIA D+ +CC LAR+LA GW Q A PD A E+ +M+WF +EV++ EP A + TP E+AG +LGKKHL+ LL +G CL N+I+EKV++LV + PE E + ST
Sbjct: 872 AGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXX---------GWRQGEYALPDGAGEKDVMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPEDEGNAVST 1051
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.300e-35 Identity = 94/226 (41.59%), Postives = 126/226 (55.75%), Query Frame = 1
Query: 1 AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSK-----------------------ICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVIL----------PEAERKSASTFPGM 579
AG+ ++ LS AVPVV GLA AA+AL D +QTRRV K I D+A D+ + C LAR+LAL++++G GT+ TTD S VGG GW+ ++ A PD SEEA+M+WF EEVA+ E N A + TPAE+AGR+LGK+HLK LL +G+ L TN+ +EKV+ L+ VI P AE KS +P +
Sbjct: 143 AGEAMQLLSHAVPVVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNS----------VGGR----GWNLDLGALPDGTSEEAVMEWFTEEVANHEANTT-ASRGTPAEQAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAV 353
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI) HSP 1 Score: 139 bits (350), Expect = 3.050e-34 Identity = 81/201 (40.30%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 55 AGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVG---GVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSASTFPGMEENTTHAPSSASSSRPTSVKLHA 648
AG AA AL GD +QTRRV K+ D+APD+ +CC +A+ L L+L+D D T+ T+ H+ A G G+ C WSQ PD AS+E M+WF EE A PN+ K+TP E+ GR+LGK+H++++L + R CL+ T++I+EKV+ L+ V++PEA K S E + P++ + S + LHA
Sbjct: 386 AGFAAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGI-GACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPNNTG--KSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHA 583
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 136 bits (343), Expect = 3.760e-33 Identity = 83/188 (44.15%), Postives = 117/188 (62.23%), Query Frame = 1
Query: 4 GKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADCCVLARKLALQLSDGYVDGTLPTTDTSEERGAHTTASVGGVEDECGWSQEMNASPDAASEEAIMDWFIEEVADSEPNDCDAKKTTPAEEAGRKLGKKHLKILLKEIGRDCLRDTNSIDEKVQVLVGVILPEAERKSAST 567
G L LSSAVPV+SGLAGLA AL GD YLQTRR++KI +A D+ +CC LAR+LALQL+DG D T D +++ HTTA + G G ++ + PD E+ + + +EEVA E +D G++LGKKHL+ LLK I R CL ++ I +K+++L+ ILPEA+ +++ T
Sbjct: 600 GTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMNGGS---GSGRDADILPDIIIEDDVFEHLLEEVARYERSD----------HGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSET 774 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9780.17779.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9780.17779.1 >prot_E_fasciculatus_S2_contig9780.17779.1 ID=prot_E_fasciculatus_S2_contig9780.17779.1|Name=mRNA_E_fasciculatus_S2_contig9780.17779.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=233bp AGKTLKFLSSAVPVVSGLAGLAASALTVGDRYLQTRRVSKICDIAPDSADback to top mRNA from alignment at E_fasciculatus_S2_contig9780:29..2956+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9780.17779.1 ID=mRNA_E_fasciculatus_S2_contig9780.17779.1|Name=mRNA_E_fasciculatus_S2_contig9780.17779.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2928bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9780:29..2956+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9780:29..2956+ >mRNA_E_fasciculatus_S2_contig9780.17779.1 ID=mRNA_E_fasciculatus_S2_contig9780.17779.1|Name=mRNA_E_fasciculatus_S2_contig9780.17779.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=699bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9780:29..2956+ (Ectocarpus fasciculatus EfasUO2)back to top |