mRNA_E_fasciculatus_S2_contig978.17778.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig978.17778.1
Unique NamemRNA_E_fasciculatus_S2_contig978.17778.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig978.17778.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E7_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 7.940e-19
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:  895 GRRSNTRHRIGGGAHDGKSRAAAGGEGGGDGRWGRAGGTAGRVAITDGRRAAYNAAMTVCGKAGRWDRALGLLE 1116
            G RSN  HRIGGGAHDG+SRA AG    GDG+WGRAGGTAGRVA  DGR AA NAA+T+CGKAGRWD   GLLE
Sbjct:  385 GGRSNAGHRIGGGAHDGRSRATAGXXXAGDGKWGRAGGTAGRVAFPDGRGAASNAALTLCGKAGRWDPPRGLLE 458
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig978.17778.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.940e-1974.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig978contigE_fasciculatus_S2_contig978:22703..25273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score100.9
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7G0E7
Model size1116
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size1116
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.8917046-CDS-E_fasciculatus_S2_contig978:22702..228461696842620.8917046-CDS-E_fasciculatus_S2_contig978:22702..22846Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig978 22703..22846 +
1696842620.9070404-CDS-E_fasciculatus_S2_contig978:23251..233641696842620.9070404-CDS-E_fasciculatus_S2_contig978:23251..23364Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig978 23252..23364 +
1696842620.9196794-CDS-E_fasciculatus_S2_contig978:24076..242061696842620.9196794-CDS-E_fasciculatus_S2_contig978:24076..24206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig978 24077..24206 +
1696842620.930666-CDS-E_fasciculatus_S2_contig978:24544..252731696842620.930666-CDS-E_fasciculatus_S2_contig978:24544..25273Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig978 24545..25273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig978.17778.1prot_E_fasciculatus_S2_contig978.17778.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig978 22703..25273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig978.17778.1

>prot_E_fasciculatus_S2_contig978.17778.1 ID=prot_E_fasciculatus_S2_contig978.17778.1|Name=mRNA_E_fasciculatus_S2_contig978.17778.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=372bp
MNLTKQVTACGRGGNLEAALSLLDGMRGKGVSPNCFTYNSAIHACARKGK
WKLALELVERMKADGVTPNLTTYSSAADACAKGGNCVAALKILEEVRSLD
FEVGEILYNSVMEACAAVGQTKLSLSLLETMRKDGVKPSPATYTTAITAC
GRTADWKRALLLLVEMRKSFPSRPLDVNRTAAAAAAAAAAAAAAAGQRER
EVVGRGNGDDHSSSSSSSGSSVSGEDVGSSRHDESGTDDSKVGPDWWGKG
NVQEVMGATGGSRRRGGRRPPSLDPPKSASTPPVAATTTRPAAQPAGRGR
RSNTRHRIGGGAHDGKSRAAAGGEGGGDGRWGRAGGTAGRVAITDGRRAA
YNAAMTVCGKAGRWDRALGLLE
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mRNA from alignment at E_fasciculatus_S2_contig978:22703..25273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig978.17778.1 ID=mRNA_E_fasciculatus_S2_contig978.17778.1|Name=mRNA_E_fasciculatus_S2_contig978.17778.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2571bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig978:22703..25273+ (Ectocarpus fasciculatus EfasUO2)
ATGAACTTGACGAAACAGGTGACCGCCTGCGGCCGCGGCGGGAACCTCGA
GGCGGCGTTATCCCTGCTGGACGGCATGAGGGGAAAGGGCGTCTCCCCCA
ACTGCTTCACCTACAACAGCGCCATTCACGCCTGCGCTAGAAAGGCGAGT
CTGCCCGCTGACTTCTAGTTCCCTGGGGTAGTTAGAATGGCGTTGGAGGT
GACGGAGAGAGAGGACGAAGTATGCTCTAAACAACGGTGTTGGTTGAGTT
TTGTTTGTGTCGCACATGTAGGGCGAGTGCTGATGAGTTGCAGCTGTTTT
TGTCAGGAATCCGCACCAGTACAATAATTCACTTCTTTGTTTCTTCTGGC
GTTGGAGCTGGTGGGTAGCTGGTGGGTTGGATATATGCTACTTTGTCACG
GTTTGTAGTGCGTGTGATTCATCTGTCTGGCAAACATGCCTCTGGCAAGA
AAGTACCGCTTGCCCTTTGTCATTTTTAACCCGAAATGCAAGTAAACGCA
CACTCTGTACACTTGTTTCTCACGCGCACACGACGACAACGTTGGACAGG
GCAAGTGGAAGCTGGCACTGGAGCTGGTTGAGAGGATGAAGGCGGACGGG
GTCACGCCGAATCTCACAACGTACTCTAGCGCCGCCGACGCGTGTGCTAA
GGGGGGCAATTGGTGAGAACAACCGAGGGCAGATGGTGGGGCGGAGAAAA
ACCGTTACAATAGCGAGGAACAGAGACGAGACTGTGCAATGCTGTATGCT
ACGCGGGGAAACTCAACGTTGTGTGTCCGTGTGTTGGTGGCTTGACAATG
TGTGCAGCACGAGCAAGGTAGACTTGGAGTGTTGTGTGGGCAACACGACG
ATAAGATACCTGTAGATCACTCGGCGTGGGCGTGCGCCTGTCGGTGGGTC
CGATCCGATTGGCATAGCTTGGCATAGCTTGGCATAGCTTGGCATAGCTT
GGCATAGCATACGTACGCCAATATCAAGGCTTGAATTGAAGCACATGAAA
GAGGGGGGGGGCAACGGCGTCGTGCGTATTGCCCATTGCGACAGGCTACT
GTAGAGTAAGGGCAGTATGGATGGGTGGACAGATAGACAGACAGACAGAC
AGACACAGAGAGGGAGAGAGACAAAGCGAGAGCGAGGAGTAGTTACATGG
CCGAGCCAGAATCAAGCACACCAGAAACGGGACGAGAGTTCCCGAGGACC
GCTGCTGTCATCACTCTCGTGTAGTATCCCTCTCTCTGTTGACATTTTCG
TTCGGTTCTTCGATCGTTTCACCGTCCATCTCATGCGATACTCATCTCCT
GTCTTCCTCAACCCGCCCCCTTTTCTTTTCCTTTTCTCCCTTCTCTGTCT
TACTATCGTTGTATCCTGTCGCAGCGTGGCTGCTCTCAAGATACTGGAGG
AAGTCCGCAGCCTCGATTTTGAAGTTGGAGAGATCTTGTACAATTCGGTT
ATGGAGGCGTGTGCCGCCGTGGGGCAGACGAAACTGTCGCTTTCACTTCT
TGAGGTGGGTTTGGTTCGGTTCAGTTCGGTTCGGTTCGGTTCGGTTCGGT
TCGGGGTGCAACTTTTCATTTGCCCCACGGCGATGAACCTGTCTCCCTCA
CCAAATGCCTTGTTAAACCTTATGGTCCACTTAAATTGTACCGTAGTTCG
AGGTCATGCGGTGACGGACTACGGGTTCACATCACTTTCTGCTCGAAAGA
AGTGTTGCGTTCTTGCCCGCATAAATATTTATATCTTGGTGTGTGTTTTC
GTATGCGTACAAAAGCATACATACCATCTCTTTTTAGTACTTTTCTCTCG
AGGACTTGGGGCTGATCTTGCGTTCGGTTGCGACGGAAACAGACGATGCG
GAAGGACGGCGTGAAGCCGAGTCCGGCGACGTACACGACGGCGATAACTG
CGTGCGGCCGAACCGCAGACTGGAAGCGAGCCCTGCTGCTGCTGGTAGAG
ATGAGGAAGTCGTTTCCCTCCCGCCCTCTCGACGTCAATCGGACCGCGGC
AGCTGCTGCCGCTGCTGCGGCGGCGGCGGCAGCAGCAGCGGGGCAGCGTG
AACGGGAGGTAGTAGGAAGGGGAAACGGCGACGACCACAGCAGCAGCAGC
AGCAGCAGCGGTAGTAGCGTTTCTGGCGAAGACGTTGGCTCTAGTCGTCA
TGACGAGAGCGGCACCGACGACAGCAAGGTGGGCCCCGACTGGTGGGGAA
AAGGGAACGTCCAGGAGGTGATGGGCGCCACCGGTGGATCTAGACGACGA
GGCGGTAGAAGACCACCATCGTTAGACCCCCCAAAAAGTGCGTCAACACC
ACCAGTCGCAGCCACAACAACAAGACCAGCCGCACAACCAGCAGGCAGGG
GGAGGAGGAGCAATACACGGCACAGAATAGGGGGGGGCGCGCATGACGGC
AAGAGCCGGGCTGCCGCAGGCGGGGAGGGCGGGGGTGACGGGAGGTGGGG
CAGGGCGGGGGGTACGGCCGGGCGAGTGGCCATCACGGACGGGCGGCGGG
CGGCCTACAACGCGGCCATGACTGTGTGTGGCAAGGCTGGGAGGTGGGAC
CGCGCGCTGGGCTTGCTCGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig978:22703..25273+

>mRNA_E_fasciculatus_S2_contig978.17778.1 ID=mRNA_E_fasciculatus_S2_contig978.17778.1|Name=mRNA_E_fasciculatus_S2_contig978.17778.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1116bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig978:22703..25273+ (Ectocarpus fasciculatus EfasUO2)
ATGAACTTGACGAAACAGGTGACCGCCTGCGGCCGCGGCGGGAACCTCGA
GGCGGCGTTATCCCTGCTGGACGGCATGAGGGGAAAGGGCGTCTCCCCCA
ACTGCTTCACCTACAACAGCGCCATTCACGCCTGCGCTAGAAAGGGCAAG
TGGAAGCTGGCACTGGAGCTGGTTGAGAGGATGAAGGCGGACGGGGTCAC
GCCGAATCTCACAACGTACTCTAGCGCCGCCGACGCGTGTGCTAAGGGGG
GCAATTGCGTGGCTGCTCTCAAGATACTGGAGGAAGTCCGCAGCCTCGAT
TTTGAAGTTGGAGAGATCTTGTACAATTCGGTTATGGAGGCGTGTGCCGC
CGTGGGGCAGACGAAACTGTCGCTTTCACTTCTTGAGACGATGCGGAAGG
ACGGCGTGAAGCCGAGTCCGGCGACGTACACGACGGCGATAACTGCGTGC
GGCCGAACCGCAGACTGGAAGCGAGCCCTGCTGCTGCTGGTAGAGATGAG
GAAGTCGTTTCCCTCCCGCCCTCTCGACGTCAATCGGACCGCGGCAGCTG
CTGCCGCTGCTGCGGCGGCGGCGGCAGCAGCAGCGGGGCAGCGTGAACGG
GAGGTAGTAGGAAGGGGAAACGGCGACGACCACAGCAGCAGCAGCAGCAG
CAGCGGTAGTAGCGTTTCTGGCGAAGACGTTGGCTCTAGTCGTCATGACG
AGAGCGGCACCGACGACAGCAAGGTGGGCCCCGACTGGTGGGGAAAAGGG
AACGTCCAGGAGGTGATGGGCGCCACCGGTGGATCTAGACGACGAGGCGG
TAGAAGACCACCATCGTTAGACCCCCCAAAAAGTGCGTCAACACCACCAG
TCGCAGCCACAACAACAAGACCAGCCGCACAACCAGCAGGCAGGGGGAGG
AGGAGCAATACACGGCACAGAATAGGGGGGGGCGCGCATGACGGCAAGAG
CCGGGCTGCCGCAGGCGGGGAGGGCGGGGGTGACGGGAGGTGGGGCAGGG
CGGGGGGTACGGCCGGGCGAGTGGCCATCACGGACGGGCGGCGGGCGGCC
TACAACGCGGCCATGACTGTGTGTGGCAAGGCTGGGAGGTGGGACCGCGC
GCTGGGCTTGCTCGAG
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