mRNA_E_fasciculatus_S2_contig9774.17773.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9774.17773.1
Unique NamemRNA_E_fasciculatus_S2_contig9774.17773.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9774.17773.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.590e-26
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = 3 
Query:    3 SSSAVISGIERWVFGGKQERTTPIMSPNRTKPAGGAAGASSTAEVSPTPGTTTMHDYVRAM 185
            SSSAVISGIERWVFGGKQERTTPIMSPNR KPA   AGASSTAEVSP PGTTTMHDYVRAM
Sbjct:  213 SSSAVISGIERWVFGGKQERTTPIMSPNRNKPA--TAGASSTAEVSPAPGTTTMHDYVRAM 271
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BLAST of mRNA_E_fasciculatus_S2_contig9774.17773.1 vs.
Match: Kinesin (motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.070e-24
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 3 
Query:    3 SSSAVISGIERWVFGGKQERTTPIMSPNRTKPAGGAAGASSTAEVSPTPGTTTMHDYVRAM 185
            SSSAVISGIERWVFGGKQERTTPIMSPNR KPA   AG SSTAEVSP PGTTTMHDYVRAM
Sbjct: 1062 SSSAVISGIERWVFGGKQERTTPIMSPNRNKPA--TAGPSSTAEVSPAPGTTTMHDYVRAM 1120
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9774.17773.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.590e-2691.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Kinesin5.070e-2490.16motor domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9774contigE_fasciculatus_S2_contig9774:3818..4736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.7280414-UTR-E_fasciculatus_S2_contig9774:3817..38791696842620.7280414-UTR-E_fasciculatus_S2_contig9774:3817..3879Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9774 3818..3879 +
1696842620.7449136-UTR-E_fasciculatus_S2_contig9774:4393..44051696842620.7449136-UTR-E_fasciculatus_S2_contig9774:4393..4405Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9774 4394..4405 +
1696842620.7707834-UTR-E_fasciculatus_S2_contig9774:4519..47361696842620.7707834-UTR-E_fasciculatus_S2_contig9774:4519..4736Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9774 4520..4736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.758873-CDS-E_fasciculatus_S2_contig9774:4405..45191696842620.758873-CDS-E_fasciculatus_S2_contig9774:4405..4519Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9774 4406..4519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9774.17773.1prot_E_fasciculatus_S2_contig9774.17773.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9774 4406..4519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9774.17773.1

>prot_E_fasciculatus_S2_contig9774.17773.1 ID=prot_E_fasciculatus_S2_contig9774.17773.1|Name=mRNA_E_fasciculatus_S2_contig9774.17773.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=38bp
MSPNRTKPAGGAAGASSTAEVSPTPGTTTMHDYVRAM*
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mRNA from alignment at E_fasciculatus_S2_contig9774:3818..4736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9774.17773.1 ID=mRNA_E_fasciculatus_S2_contig9774.17773.1|Name=mRNA_E_fasciculatus_S2_contig9774.17773.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=919bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9774:3818..4736+ (Ectocarpus fasciculatus EfasUO2)
CTTCCTCATCCGCGGTGATCAGCGGCATCGAACGCTGGGTGTTCGGCGGG
AAGCAGGAACGGGTGAGTCACTTCAATGAGTTGGCCACGGCAGTTCGTTA
CTCTTGACTCTTGGAATATTTGATGCCGTCTTCGCGGCAGATAATAACTA
CGTAGTTCACGACAAGACACCAACTCAAACATGGAGTTTTATTGTTAGGT
TTAGTTTGCAACTATTGCTGACAGAAGCCGTCGGTCTTGTTGTTGTGTTT
GCAGCCTGTGGTCGAGAGGGTTGTGAAAAATTCGCGGCCTTGTCACACAA
GCGGTACAGGTTACCTCGAGGGTTGATTGCGACCGCATCACGTTCGAATT
AGACAAACGTGATTTTCGAAGGTGCACAGAACGAATATCGGAGCTCTTCT
TATAATGCAAGGACAACAGCAACAGCAGCATCTTCCCCCGCTCCTTCCGT
CCACACCCTTTCTTTTTCACGGCTGCATACCCCACCTTCGCAACCATACT
AAGGTACCAACGGACCCTCACGCTCATCTACCCCCGCGGCCATGCTTTCC
TTGACCCGCTGCGTGAACTTCAAAAGACTACTCCGATCATGAGCCCGAAT
AGGACCAAGCCTGCGGGTGGGGCGGCCGGAGCATCCTCGACAGCAGAGGT
TAGCCCGACCCCTGGCACCACCACCATGCACGACTACGTGCGAGCGATGT
AGAGAGAGCGGAGTTTGAGGGCTAGCTAGCTAGCTAGCTTAGTCGGAGGA
GTACCTGTGTCTTTGGCGACGGAATGCAGAGCGGGGTTAAAAGCCAGCTA
GCTCTTGTCCGAGGAGTCTCTACGGCTGGCGCGGAGGTCGCTAGCTCTCG
TGAAGAGTGAACAGAGCAAAGCCTGCAGAGGGCGGGGATAGTGCGGATGG
GGGGGATAGCACCTTGGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9774:3818..4736+

>mRNA_E_fasciculatus_S2_contig9774.17773.1 ID=mRNA_E_fasciculatus_S2_contig9774.17773.1|Name=mRNA_E_fasciculatus_S2_contig9774.17773.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=114bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9774:3818..4736+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCCCGAATAGGACCAAGCCTGCGGGTGGGGCGGCCGGAGCATCCTC
GACAGCAGAGGTTAGCCCGACCCCTGGCACCACCACCATGCACGACTACG
TGCGAGCGATGTAG
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