mRNA_E_fasciculatus_S2_contig9773.17771.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9773.17771.1
Unique NamemRNA_E_fasciculatus_S2_contig9773.17771.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD13_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 4.030e-145
Identity = 183/195 (93.85%), Postives = 189/195 (96.92%), Query Frame = 1
Query:    1 VYGLCVPCGLATARHRLDGSSWCVNAMCLTPCAARNIARHGYGIKGHCCADIMCSLVCAPCVTCQLLGETEKRGCIYDSWNDQSARSRREQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTGSPGFNSVER 585
            +YGLCVPCGLATARHRLDGSSWCVNAMCL+PCAARNI RHGYGIKGHCCADI+CSLVCAPCVTCQLLGETEKRGC+YDSWNDQSARSRREQPWKFGLFNCLDD  TCSY F CPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQ+YNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTG PGFN+VER
Sbjct:   80 LYGLCVPCGLATARHRLDGSSWCVNAMCLSPCAARNIVRHGYGIKGHCCADILCSLVCAPCVTCQLLGETEKRGCVYDSWNDQSARSRREQPWKFGLFNCLDDCTTCSYGFFCPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQSYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTGCPGFNAVER 274          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR6_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.920e-61
Identity = 91/183 (49.73%), Postives = 116/183 (63.39%), Query Frame = 1
Query:   13 CVPCGLATARHRLDGSSWCVNAMCLTPCAARNIARHGYGIKGHCCADIMCSLVCAPCVTCQLLGETEKRGCIYDSW-NDQSARSRREQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTG 558
            C PC +ATA  R DGSSW  N   + PC ARN+ R GYGI+GHCC+D++C+ +  PC+T QLL ET +RG + D W      RS     WKFGL    +D     YA C P  A+G++RT +D SDWIFNC  +N   AR++VR  YNIEGT + D   +C C PC+I+QM+ E QHRG V G
Sbjct:    6 CPPCAVATAVTRFDGSSWANNCCFVNPCMARNVVREGYGIEGHCCSDLLCTCLFLPCMTGQLLAETAERGSVIDHWARSNRYRSPTLTQWKFGLCGFTEDPGKLFYALCMPWCALGSVRTDLDGSDWIFNCCFLNSCAARAMVRHAYNIEGTTANDVATSCFCLPCAISQMMIEVQHRGRVNG 188          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1M3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.190e-42
Identity = 76/186 (40.86%), Postives = 102/186 (54.84%), Query Frame = 1
Query:    1 VYGLCVP-CGLATARHRLDGSSWCVNAMCLTPCAARNIARHGYGIKGHCCADIMCSLVCAPCVTCQLLGETEKRGCIYDSWNDQSARSRREQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVT 555
            ++  C+P C +A AR + DGS+ C N MC+   A RNI R GY IKG C  D++ +L C  CV  Q++ E E RG +   +   S R   E PWK  +F+   + +   Y  CCP  A+   RT  D SD  FN LC  P +ARS++R+ YNIEG+   D L    C  C   Q++NE   RG VT
Sbjct:   34 IFACCLPWCAVADARTKFDGSNCCFNVMCVGIVAGRNIIREGYKIKGGCIGDLIATLFCPVCVMTQMMNEVESRGKVTAQYG--SNRPATEVPWKHSIFDICFNSSNFIYGCCCPSCAIAQARTDFDGSDCCFNFLCFTPCLARSVIREGYNIEGSCIMDILCPWLCVECVACQLMNEVSDRGKVT 217          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.140e-41
Identity = 77/185 (41.62%), Postives = 104/185 (56.22%), Query Frame = 1
Query:    4 YGLCVPC-GLATARHRLDGSSWCVNAMCLTPCAARNIARHGYGIKGHCCADIMCSLVCAPCVTCQLLGETEKRGCIYDSWNDQSARSRREQPW-KFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNV 552
            YGL  PC  +ATAR   DGS+WC N +     AAR+I R GY IKG   +DI  ++ CA C   QL+ E E RG +   +   +AR    QPW K G+ +   +     +  CCP  A+   R+  D S++ FNC C++P +ARS++R+ YNIEG    D +  CCC  C+  QMLNE   RG V
Sbjct:   51 YGLFCPCCAIATARTYYDGSNWCFNCLVTPHLAARDIIREGYNIKGSWLSDIFLTIFCAGCSAVQLMNEVETRGLVSADFG--TARPPDPQPWTKKGVCS---NFGNFFFGMCCPHCAISQARSSFDGSEFCFNCCCVSPCLARSVIREGYNIEGNCFGDLIYPCCCPSCAACQMLNEVDERGKV 230          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: protein (PLANT CADMIUM RESISTANCE 2-like isoform X1 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B5Y8_NELNU)

HSP 1 Score: 65.5 bits (158), Expect = 1.190e-9
Identity = 33/110 (30.00%), Postives = 50/110 (45.45%), Query Frame = 1
Query:  259 SRREQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSD-------------WIF-NCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRG 546
            S+ + PW  GLF+C +D  +C     CP    G I   +                 W+   C  I     RS++RQ ++++ T  ADCL+ CCC  C++ Q   E + RG
Sbjct:   56 SQAQYPWSSGLFDCFNDCESCCLTLWCPCITFGRIAEIVSKGSSSCVGSASLYTLIWVLLGCPWIYSCTYRSMLRQQFSLQETPCADCLVHCCCDCCALCQEYRELKQRG 165          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6WHG2_9AGAR)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-9
Identity = 38/121 (31.40%), Postives = 50/121 (41.32%), Query Frame = 1
Query:  259 SRREQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQM-----------------DDSDWIFNCL-----------CINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQ 537
            S  ++ W  GL +C  D  TC YA+CCP    G  + +M                   S W   CL           CIN    R  VR  Y I+G    DC+ +CCC PC +TQ+  E +
Sbjct:  266 SHGKREWSHGLCDCFGDCGTCFYAWCCPCIVHGKNKQRMAHLQERGSPDPDGGSCCSGSCWAHCCLTSFLGVGFILQCIN----RGEVRARYGIDGGGCGDCMASCCCTPCDLTQVSREIE 382          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6YU30_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 2.750e-9
Identity = 38/123 (30.89%), Postives = 52/123 (42.28%), Query Frame = 1
Query:  268 EQPWKFGLFNCLDDLATC--SYAFCC---------------------PMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTGSPG 567
            ++ W +G+F+CL D  TC  S+   C                     PM  V +  T M      F C  +     R+  R  Y+I+G  + DCLL CCC PCS+TQ   E +      G PG
Sbjct:   30 QREWSYGVFDCLSDPLTCVVSWFLPCVSYGRNRARYNALENGAVSKDPMEGVVSNETIMYGLAQCFGCGGLIGMGGRAQTRGRYSIQGDGATDCLLACCCAPCSLTQESREIELEEQSLGHPG 152          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: PLAC8-domain-containing (protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166AB00_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 2.500e-8
Identity = 36/112 (32.14%), Postives = 47/112 (41.96%), Query Frame = 1
Query:  268 EQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQ--------------------MDDSDWIFNCLCINPFIA----RSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNE 531
            E+ W  GL  C  D  TC  A  CP    G I  +                    MD  ++     C+  +I     RS VR+ YNI GT   DC+ +CCC+PC +TQ   E
Sbjct:    6 ERDWTHGLMACFADCGTCCLATWCPCFVFGQISKRRKYLEKNGLPDPEYGGTGCGMDCCNFHGGQPCMLSWICQMGGRSHVRKRYNIRGTGCGDCVTSCCCYPCGLTQESRE 117          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: protein (PLANT CADMIUM RESISTANCE 2-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E693FFF)

HSP 1 Score: 60.5 bits (145), Expect = 3.340e-8
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 1
Query:  277 WKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSDW------IFNCLC--------INPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTGSPGFN 573
            W  GLF+C  D ++C   F CP  + G +   +D          +  C+         I   I R+ +R+ Y IEG  + DC+++CCC   SI Q   E + RG V  S G++
Sbjct:    7 WSTGLFDCFSDTSSCCLTFWCPCVSFGRVAEIVDRGTTSCCMHGVLYCVLGGFSHFGSIYACIYRTKLRRVYGIEGNQTCDCIISCCCGLISICQEHRELEARG-VNVSAGWD 118          
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XTJ2_9AGAR)

HSP 1 Score: 61.6 bits (148), Expect = 5.960e-8
Identity = 34/124 (27.42%), Postives = 51/124 (41.13%), Query Frame = 1
Query:  268 EQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMDDSDW------------------------IFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNVTGSPG 567
            ++ W +G+F+CL D  TC  ++  P  + G  R + +  +                          F C  +     R+  R  Y+I+G  + DCLL CCC PCS+TQ   E        G PG
Sbjct:  111 QREWSYGVFDCLADPLTCVVSWFLPCVSYGRNRARYNSLELNGTVSKDPMEGVISNESIMYGVAQCFGCGGLIGMGGRAQTRGRYSIQGDGATDCLLACCCAPCSLTQESREIALEEQSLGHPG 234          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9773.17771.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Uncharacterized4.030e-14593.85protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD13... [more]
Uncharacterized2.920e-6149.73protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical2.190e-4240.86protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical3.140e-4141.62protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
protein1.190e-930.00PLANT CADMIUM RESISTANCE 2-like isoform X1 n=1 Tax... [more]
5'-deoxynucleotidase2.180e-931.40n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=13... [more]
Uncharacterized2.750e-930.89protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A... [more]
PLAC8-domain-containing2.500e-832.14protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 T... [more]
protein3.340e-830.97PLANT CADMIUM RESISTANCE 2-like n=1 Tax=Trifolium ... [more]
Uncharacterized5.960e-827.42protein n=1 Tax=Mycena sanguinolenta TaxID=230812 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9773contigE_fasciculatus_S2_contig9773:187..2742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score72.0
Seed ortholog evalue3e-10
Seed eggNOG ortholog71139.XP_010066585.1
Model size628
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0008285,GO:0042127,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
Exons4
EggNOG free text desc.Protein PLANT CADMIUM RESISTANCE
EggNOG OGs2E0DQ@1,2S7UD@2759,37UTH@33090,3GJ15@35493
Ec32 ortholog descriptionUncharacterised protein family Cys-rich
Ec32 orthologEc-01_001880.1
Cds size510
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9773.17771.1prot_E_fasciculatus_S2_contig9773.17771.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9773 265..2702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.5545008-UTR-E_fasciculatus_S2_contig9773:186..2641696842620.5545008-UTR-E_fasciculatus_S2_contig9773:186..264Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9773 187..264 +
1696842620.6066563-UTR-E_fasciculatus_S2_contig9773:2702..27421696842620.6066563-UTR-E_fasciculatus_S2_contig9773:2702..2742Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9773 2703..2742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.5661433-CDS-E_fasciculatus_S2_contig9773:264..3211696842620.5661433-CDS-E_fasciculatus_S2_contig9773:264..321Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9773 265..321 +
1696842620.5754523-CDS-E_fasciculatus_S2_contig9773:981..11651696842620.5754523-CDS-E_fasciculatus_S2_contig9773:981..1165Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9773 982..1165 +
1696842620.5846493-CDS-E_fasciculatus_S2_contig9773:1974..21141696842620.5846493-CDS-E_fasciculatus_S2_contig9773:1974..2114Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9773 1975..2114 +
1696842620.5972207-CDS-E_fasciculatus_S2_contig9773:2573..27021696842620.5972207-CDS-E_fasciculatus_S2_contig9773:2573..2702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9773 2574..2702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9773.17771.1

>prot_E_fasciculatus_S2_contig9773.17771.1 ID=prot_E_fasciculatus_S2_contig9773.17771.1|Name=mRNA_E_fasciculatus_S2_contig9773.17771.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MCLTPCAARNIARHGYGIKGHCCADIMCSLVCAPCVTCQLLGETEKRGCI
YDSWNDQSARSRREQPWKFGLFNCLDDLATCSYAFCCPMPAVGTIRTQMD
DSDWIFNCLCINPFIARSLVRQNYNIEGTDSADCLLTCCCFPCSITQMLN
ETQHRGNVTGSPGFNSVER*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9773:187..2742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9773.17771.1 ID=mRNA_E_fasciculatus_S2_contig9773.17771.1|Name=mRNA_E_fasciculatus_S2_contig9773.17771.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2556bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9773:187..2742+ (Ectocarpus fasciculatus EfasUO2)
GTGTACGGTCTTTGCGTCCCTTGCGGGTTGGCGACGGCGAGGCATCGCCT GGACGGGTCCTCGTGGTGCGTGAACGCCATGTGCTTGACCCCTTGTGCGG CGAGGAACATCGCCCGCCACGGCTACGGCATCAAGGTAAGGCGGGAAGGA GACTATTAATGCTGCTGTATTCGCTTCGTTTCAGGCGGGCATATGTATCG TAAGGCGGTGCGTCGTGAGGAGGCAAGGAAGGAAGGCGTTTTTATACCGG AATTTTTCGAGATGTGTTTAAGAACACCCACTCCCCTCCCCTGGAACGTG TGAATGCTCGCTTTCCTGCCCCCAGCACACTGCACCAGAGGGATAGATGG CGTTAATTGTTGACGTTTTTCCGGCGTGTCGCGAGCCTGACTCCCGATTT TTGTAGGAAAATGTTCGGGTAATTTTATGTAAAAGCGTCACAGTAGCCAG GTAAACTTCAGTGTATGCTTGCCCGGCAATGGCAATCGAGGTTCGATTAA CAACGGTGTGAAAAGTGACAAAGAGTTCGGACATTCTGCCAATACAAGTT AAGCTGCAAGTTGAACGCTTGAGAGTTTCGTGGATTGGCGTACTTCCTGG ACCTCCTGGCAGGCGCTGTTGCTAGGTAGGGTGGTACACTTGCCACGCTG CTGCTTTTGACCTGGTAATGGTTCACTCTGTGTACTCATCCTAGTATACG TCCGCCTGGCGTATCGACTTCAAAAACCACATACACCCTTCACATCACCA TCGCTCAATTGAAATCCAACTTTTTCGTCGAACCACCTGGAGCAGGGGCA CTGCTGCGCGGATATTATGTGCAGCTTGGTGTGTGCGCCGTGCGTGACGT GCCAGCTGCTGGGGGAGACGGAGAAGAGGGGGTGCATCTACGACTCTTGG AATGACCAGTCGGCGAGGTCGCGGCGCGAACAGCCCTGGAAGTTCGGGCT GTTCAACTGCCTGGACGACTTGGCCACCTGTGAGTTGTTTAGCCGTTTTA GAAAATTGTGCTCAAAATCGAGAGCAAGGTTGAGATATTTTAGTACCCCA TTCGAAGGGCTGTCTATGTTTGATTAGACGATTCAAAGACACTACGGAGT ACTTGATACTCGCGCTCACTTGCGCCTGTTGCAAGTATGTTCCCTTGAGA AAGCAGTGGTGTTGGGGCGGAACAAATCACCTACGGAGGTACAAAAACAA AAACATGGTGTAGTTTTTGTGTTCGTCGCGAATGGTTTTCCCGTCATCCA TGCAGGGCGCACTCGCGAGTGCGGTTGACTTGCTGCCGTTGGTCTGGGCT CGTTGCCTTTCTCCGTGCCTACGTCGTGTGCCTAGCATTGGTAGGAAGAT AGATGCAAAGGTAGTTGTGCCTATTGTAGCATGGCATAGTGCGAGGGGCT CCGCCGGACGGCCGCAAATCTTAAACGGGGTCCTGACGGCAGCAGAAACG ACCATATCCGCTTGAAGTTTCGCGCCTTAGACTCGTCCTTCACTTCCGTT GGCATGCCCGTCGCCTGGTTACCGCACAAAGGCCGTGACCCTCATCCTGT GTTCGTGGCTAAAATGGGGTCCTGACAGTCCAGTGTTTGTATCGGCCCGC CCCGGTCCCCCCCCGTTTGCGGCGCCTTCCTTGCCAGCGAAAACCCGAAT CTATGGGGGTGGGGGGTGGGGGGGTTCCGTAGCTTGAGGACTGACGTCGA CAGGCGGTGCATGACAAGGACTTCTCCTCACACCGAACCCACCCGTGCCC ATTTCTTGTTGCCGCGCCCGTTTCGCGTGTATGTCCAGGCTCGTACGCTT TCTGCTGCCCGATGCCTGCCGTCGGAACGATCCGCACTCAGATGGACGAC TCGGACTGGATCTTCAACTGCCTGTGCATCAACCCCTTCATCGCCAGGAG CCTCGTCCGCCAGAACTACAACATCGAGGTCCGTTCATTTCACCTCGTTT GAATTTGTGTTGTTGGTGTATTGTTTACAATAGTTCCCTCGGGTCGCAAC TTGTTTCGCGACGTGTGCATCGGCGGTTATATCTATCCCTTTGTCGCTGG TGGGCTTGCCGTGCATGCTCCAACTTCTTCCGTTTGTGTGTATGGTCTCA TTTGAGGATGTCACAGTCTCAACGAACACACTTTCGGTGTATTGTCCGCG CGCACCAGCCCGTGTCTCGCGGGAGGACGGCGAGACACCGGAGGTATCCT TTAGATCTATCATCTGTGTTAATTCTTGCGCACTTGCCATGCTCCGCTGG CTCAACTAAACTCGTGTCCTTTCCACCCCTCTTTTCTTGTCTTCGTCCCG TGTTGTTCTTGCGCTGGTGCGCTCCTCCATCGGCTCCGACAAAATCCCTC TTCTTCTCGCCACCGCGGCGCGGCATGGTGGCACCAGGGGACGGACAGCG CGGACTGCTTGCTGACGTGCTGCTGCTTCCCGTGCTCCATCACCCAGATG CTCAACGAGACCCAGCACCGGGGAAACGTCACGGGCTCTCCCGGCTTCAA CTCGGTTGAACGTTGATGATGTTGGTGTTGTCGTCGATTGTGCGCCCTGG GGCCGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9773:187..2742+

>mRNA_E_fasciculatus_S2_contig9773.17771.1 ID=mRNA_E_fasciculatus_S2_contig9773.17771.1|Name=mRNA_E_fasciculatus_S2_contig9773.17771.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9773:187..2742+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCTTGACCCCTTGTGCGGCGAGGAACATCGCCCGCCACGGCTACGG
CATCAAGGGGCACTGCTGCGCGGATATTATGTGCAGCTTGGTGTGTGCGC
CGTGCGTGACGTGCCAGCTGCTGGGGGAGACGGAGAAGAGGGGGTGCATC
TACGACTCTTGGAATGACCAGTCGGCGAGGTCGCGGCGCGAACAGCCCTG
GAAGTTCGGGCTGTTCAACTGCCTGGACGACTTGGCCACCTGCTCGTACG
CTTTCTGCTGCCCGATGCCTGCCGTCGGAACGATCCGCACTCAGATGGAC
GACTCGGACTGGATCTTCAACTGCCTGTGCATCAACCCCTTCATCGCCAG
GAGCCTCGTCCGCCAGAACTACAACATCGAGGGGACGGACAGCGCGGACT
GCTTGCTGACGTGCTGCTGCTTCCCGTGCTCCATCACCCAGATGCTCAAC
GAGACCCAGCACCGGGGAAACGTCACGGGCTCTCCCGGCTTCAACTCGGT
TGAACGTTGA
back to top