mRNA_E_fasciculatus_S2_contig9766.17761.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9766.17761.1
Unique NamemRNA_E_fasciculatus_S2_contig9766.17761.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9766.17761.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.170e-59
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:    1 GARRLRADTLDGCSQLLFFSAKGVHGRTHSQAPVLLRVLLDSLLPPKLSDMNAAPGERAGGEDNHSWRKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL 321
            GARRLRADTLDGCSQLLFFSAKGVHGRTHSQAPVLLRVLLDSLLPPKLSD N APGERAG EDN S RKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL
Sbjct:  250 GARRLRADTLDGCSQLLFFSAKGVHGRTHSQAPVLLRVLLDSLLPPKLSDANVAPGERAGEEDNLSRRKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL 356
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BLAST of mRNA_E_fasciculatus_S2_contig9766.17761.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 5.490e-54
Identity = 104/141 (73.76%), Postives = 104/141 (73.76%), Query Frame = 1 
Query:    1 GARRLRADTLDGCSQLLFFSAKGVHGRTHSQ---------------------------------APVLLRVLLDSLLPPKLSDMNAAP-GERAGGEDNHSWRKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL 321
            GARRLRADTLDGCSQLLFFSAKGVHGRTHSQ                                 APVLLRVLLDSLLPPKLSD NA P GERAGGEDNHS RKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL
Sbjct:  249 GARRLRADTLDGCSQLLFFSAKGVHGRTHSQVGVGGSTHRSNKTQYAAIFFAALFVVALCRCAQAPVLLRVLLDSLLPPKLSDTNARPPGERAGGEDNHSRRKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL 389
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BLAST of mRNA_E_fasciculatus_S2_contig9766.17761.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.250e-21
Identity = 54/107 (50.47%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    4 ARRLRADTLDGCSQLLFFSAKGVHGRTHSQAPVLLRVLLDSLLPPKLSDMNAAPGERAGGE-DNHSWRKELERGWCFELASAVLALLVEHVRSPHSAELWLELHYGL 321
            A R  AD LDGC  LL  + KGV GRTHS+ P LLRVLL +LL P            AGGE +  +   E  R W F+  +  LALL+ H+RSPHSAE W+ELHY L
Sbjct:  252 AARRHADVLDGCCHLLVCAIKGVAGRTHSRGPALLRVLLGTLLVP------------AGGEVEVDAAEDEARRAWYFQAVTRTLALLLAHLRSPHSAETWMELHYAL 346
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9766.17761.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
DRIM4.170e-5995.33domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DRIM5.490e-5473.76domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
DRIM3.250e-2150.47domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9766contigE_fasciculatus_S2_contig9766:1032..1504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score205.3
Seed ortholog evalue1.4e-50
Seed eggNOG ortholog2880.D8LFJ6
Model size321
KEGG koko:K14772,ko:K16569
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Exons2
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1823@1,KOG1823@2759
Cds size321
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.9706614-CDS-E_fasciculatus_S2_contig9766:1031..11241696842619.9706614-CDS-E_fasciculatus_S2_contig9766:1031..1124Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9766 1032..1124 +
1696842619.9852633-CDS-E_fasciculatus_S2_contig9766:1276..15041696842619.9852633-CDS-E_fasciculatus_S2_contig9766:1276..1504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9766 1277..1504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9766.17761.1prot_E_fasciculatus_S2_contig9766.17761.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9766 1032..1504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9766.17761.1

>prot_E_fasciculatus_S2_contig9766.17761.1 ID=prot_E_fasciculatus_S2_contig9766.17761.1|Name=mRNA_E_fasciculatus_S2_contig9766.17761.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
GARRLRADTLDGCSQLLFFSAKGVHGRTHSQAPVLLRVLLDSLLPPKLSD
MNAAPGERAGGEDNHSWRKELERGWCFELASAVLALLVEHVRSPHSAELW
LELHYGL
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mRNA from alignment at E_fasciculatus_S2_contig9766:1032..1504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9766.17761.1 ID=mRNA_E_fasciculatus_S2_contig9766.17761.1|Name=mRNA_E_fasciculatus_S2_contig9766.17761.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=473bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9766:1032..1504+ (Ectocarpus fasciculatus EfasUO2)
GGGGCGAGGAGGCTGAGGGCGGACACGCTGGACGGGTGCAGCCAGCTTCT
GTTCTTCTCTGCGAAGGGGGTACATGGACGAACACATTCTCAGGTAAGGG
TAGGAGTACGCACAGAACCACGGAGGAGGAGGAGGATGGACACGTTAGAG
AAATAGTGGCGTCGGCAAACAGCAGATGCAAAAACCCTGATTTTTTGGGT
TTGCTGTACCTTAATCTTTTTGTGATTCTTCGTCGTTGCGCCCAGGCTCC
CGTGTTGCTAAGAGTCCTGCTGGACTCTCTCCTGCCGCCGAAGCTATCGG
ACATGAACGCGGCTCCAGGGGAACGGGCGGGAGGGGAGGACAACCACAGT
TGGCGAAAGGAGCTCGAACGGGGGTGGTGCTTCGAGCTGGCAAGCGCCGT
CCTCGCCCTCCTCGTGGAGCACGTCCGCTCCCCCCACAGCGCGGAGCTAT
GGCTGGAGCTGCACTACGGCCTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9766:1032..1504+

>mRNA_E_fasciculatus_S2_contig9766.17761.1 ID=mRNA_E_fasciculatus_S2_contig9766.17761.1|Name=mRNA_E_fasciculatus_S2_contig9766.17761.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9766:1032..1504+ (Ectocarpus fasciculatus EfasUO2)
GGGGCGAGGAGGCTGAGGGCGGACACGCTGGACGGGTGCAGCCAGCTTCT
GTTCTTCTCTGCGAAGGGGGTACATGGACGAACACATTCTCAGGCTCCCG
TGTTGCTAAGAGTCCTGCTGGACTCTCTCCTGCCGCCGAAGCTATCGGAC
ATGAACGCGGCTCCAGGGGAACGGGCGGGAGGGGAGGACAACCACAGTTG
GCGAAAGGAGCTCGAACGGGGGTGGTGCTTCGAGCTGGCAAGCGCCGTCC
TCGCCCTCCTCGTGGAGCACGTCCGCTCCCCCCACAGCGCGGAGCTATGG
CTGGAGCTGCACTACGGCCTT
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