mRNA_E_fasciculatus_S2_contig9766.17760.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9766.17760.1
Unique Name	mRNA_E_fasciculatus_S2_contig9766.17760.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.180e-61
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALATGS 345
            LQLLSVLARDLQSSFFPHFPRVSTAL GLIASPDV+PEICGRVL+CLGFLLKFVARPLSKDMAAVRALY+PLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALA GS
Sbjct:  125 LQLLSVLARDLQSSFFPHFPRVSTALIGLIASPDVSPEICGRVLRCLGFLLKFVARPLSKDMAAVRALYSPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALAAGS 239

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.180e-61
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALATGS 345
            LQLLSVLARDLQSSFFPHFPRVSTAL GLIASPDV+PEICGRVL+CLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALA G+
Sbjct:  125 LQLLSVLARDLQSSFFPHFPRVSTALIGLIASPDVSPEICGRVLRCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALAAGN 239

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: DRIM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.300e-28
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASP-DVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALA 336
            LQLLSVLARDLQS+F PHF      L  L+  P    PE  GRV++ +G++LKF  RPL +D AA+RA YAPLLGH+RD+ R+ A +T A  +R+LKPKA R HA+ L+ ALA
Sbjct:  124 LQLLSVLARDLQSAFHPHFAPSMDVLAALLQGPAGDEPEAAGRVMRAVGYILKFDIRPLLEDPAALRAYYAPLLGHRRDYVRRYAGETFAAVLRKLKPKAARAHARALLRALA 236

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ13_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.950e-21
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASP-DVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMA 252
            LQLLSVLARDLQS+F PHF      L  L+  P    PE  GRV++ +G++LKF  RPL  D AA+RA YAPLLGH+RD+ R+ A
Sbjct:  124 LQLLSVLARDLQSAFHPHFAPSKDVLAALLQGPAGDEPEAAGRVMRAVGYILKFNTRPLLADPAALRAYYAPLLGHRRDYVRRYA 208

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: Small (subunit processome component 20-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNP6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.540e-13
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAMRRHAKQLVGALATG 342
            L+L+ V+A+D++    PH  R+  A+ G I   D+  ++C    + LG LL      L  D+ ++R   A LLGH+RDF RK AA   AP +RRL PK +    K+++   A G
Sbjct:  104 LKLVPVIAKDVREELLPHIDRLLDAVVGQIVEDDL--DLCAEAFRALGGLLT----ELDLDLDSLRDYMAQLLGHRRDFVRKFAADAFAPVLRRLPPKQLANQVKRVICRFAAG 211

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: UTP20 (protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7P0X1_ATRSP)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-10
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRL 285
            L L+ +LARDLQ+ F+PHF      +T L+ + D   ++      CL +L K++ R + KDMA +  LY+ LL HK++  R  AA++ A  +R++
Sbjct:  125 LDLVVLLARDLQTDFYPHFRDFFIIITSLLETQDT--QLLEWAFTCLSYLYKYLWRLMVKDMAEIYRLYSTLLAHKKEHIRNFAAESFAFLMRKV 217

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: UTP20 (small subunit processome component n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NDJ6_LEPOC)

HSP 1 Score: 66.6 bits (161), Expect = 2.030e-10
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRL 285
            L L+ +LARDLQ+ F+PHF      +T L+ + D   ++      CL +L K++ R + KDMA +  LY+ LL HK++  R  AA++ A  +R++
Sbjct:  108 LDLVVLLARDLQTDFYPHFRDFFIIVTSLLETQDT--QLLEWAFTCLSYLYKYLWRLMVKDMAEIYRLYSTLLAHKKEHIRNFAAESFAFLMRKV 200

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: Small (subunit processome component 20-like n=3 Tax=Acipenseroidei TaxID=186622 RepID=A0A444UDZ3_ACIRT)

HSP 1 Score: 65.9 bits (159), Expect = 3.790e-10
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRL 285
            L L+ +LARDLQ+ F+PHF      +T L+ + D   E    V  CL +L K++ R + KD++ + +LY+ LL H R+  R  AA++ A  +R++
Sbjct:  108 LDLVVLLARDLQTDFYPHFREFFVIITSLLETQDT--EQLEWVFTCLSYLYKYLWRLMVKDISEIYSLYSTLLAHTREHIRNFAAESFAFLMRKV 200

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: UTP20 (small subunit processome component n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3Q499_MONAL)

HSP 1 Score: 64.3 bits (155), Expect = 1.310e-9
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 1

Query:   16 VLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRL 285
            VLA DLQ+ F+PHFP     +T L+ + D   E+      CL +L K++ R + KD+  + +LY+ LL HK++  RK AA++ +  +R++
Sbjct:  114 VLAIDLQTDFYPHFPDFFILITSLLDTKDT--EVLELAFICLSYLYKYLWRLMVKDIINIYSLYSTLLAHKKEHIRKFAAESFSFLMRKV 201

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BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Match: UTP20 (small subunit processome component n=1 Tax=Colobus angolensis palliatus TaxID=336983 RepID=A0A2K5J1T7_COLAP)

HSP 1 Score: 62.0 bits (149), Expect = 8.460e-9
Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1

Query:    1 LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFLLKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPK 294
            L L+ +LARDLQ  F+PHFP     +T ++ + D   E+       L +L K++ R + KDM  + ++Y+ LL HK+   R  AA++    +R++  K
Sbjct:  108 LDLVVLLARDLQMDFYPHFPEFFLTITSILETQDT--ELLEWAFTSLSYLYKYLWRLMVKDMPNIYSMYSTLLAHKKLHIRNFAAESFTFLMRKVSDK 203

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9766.17760.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
DRIM	1.180e-61	95.65	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
DRIM	1.180e-61	95.65	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
DRIM	2.300e-28	55.75	domain-containing protein n=1 Tax=Tribonema minus ...	[more]
Uncharacterized	4.950e-21	56.47	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
Small	5.540e-13	36.84	subunit processome component 20-like n=1 Tax=Honda...	[more]
UTP20	1.490e-10	36.84	protein (Fragment) n=1 Tax=Atractosteus spatula Ta...	[more]
UTP20	2.030e-10	36.84	small subunit processome component n=2 Tax=Lepisos...	[more]
Small	3.790e-10	36.84	subunit processome component 20-like n=3 Tax=Acipe...	[more]
UTP20	1.310e-9	36.67	small subunit processome component n=1 Tax=Monopte...	[more]
UTP20	8.460e-9	33.67	small subunit processome component n=1 Tax=Colobus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9766	contig	E_fasciculatus_S2_contig9766:648..992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	214.2
Seed ortholog evalue	3.3e-53
Seed eggNOG ortholog	2880.D8LFJ6
Model size	345
KEGG ko	ko:K14772,ko:K16569
Hectar predicted targeting category	other localisation
GOs	GO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Exons	1
EggNOG free text desc.	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGs	KOG1823@1,KOG1823@2759
Cds size	345
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03009,ko03036,ko04147,ko04812

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842619.9210725-CDS-E_fasciculatus_S2_contig9766:647..992	1696842619.9210725-CDS-E_fasciculatus_S2_contig9766:647..992	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9766 648..992 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9766.17760.1	prot_E_fasciculatus_S2_contig9766.17760.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9766 648..992 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9766:648..992+
coding sequence from alignment at E_fasciculatus_S2_contig9766:648..992+

protein sequence of mRNA_E_fasciculatus_S2_contig9766.17760.1

>prot_E_fasciculatus_S2_contig9766.17760.1 ID=prot_E_fasciculatus_S2_contig9766.17760.1|Name=mRNA_E_fasciculatus_S2_contig9766.17760.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=115bp
LQLLSVLARDLQSSFFPHFPRVSTALTGLIASPDVAPEICGRVLQCLGFL
LKFVARPLSKDMAAVRALYAPLLGHKRDFARKMAAQTLAPAVRRLKPKAM
RRHAKQLVGALATGS

mRNA from alignment at E_fasciculatus_S2_contig9766:648..992+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9766.17760.1 ID=mRNA_E_fasciculatus_S2_contig9766.17760.1|Name=mRNA_E_fasciculatus_S2_contig9766.17760.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9766:648..992+ (Ectocarpus fasciculatus EfasUO2)
CTCCAGCTGCTATCGGTCCTCGCACGTGACCTCCAGAGCTCCTTCTTCCC
TCACTTCCCGCGGGTGTCCACCGCTCTCACCGGACTCATAGCGTCCCCGG
ACGTTGCCCCCGAGATCTGCGGTCGGGTGCTCCAGTGCCTCGGCTTCCTC
CTCAAGTTCGTGGCGCGCCCCCTGTCGAAGGACATGGCAGCCGTGAGGGC
GCTCTACGCCCCGCTCCTGGGGCACAAGAGAGACTTCGCGAGGAAGATGG
CGGCGCAGACGCTGGCGCCCGCGGTGCGGCGCCTGAAGCCGAAGGCCATG
CGGCGGCACGCGAAGCAGCTGGTCGGGGCTCTCGCGACGGGGAGC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9766:648..992+

>mRNA_E_fasciculatus_S2_contig9766.17760.1 ID=mRNA_E_fasciculatus_S2_contig9766.17760.1|Name=mRNA_E_fasciculatus_S2_contig9766.17760.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9766:648..992+ (Ectocarpus fasciculatus EfasUO2)
CTCCAGCTGCTATCGGTCCTCGCACGTGACCTCCAGAGCTCCTTCTTCCC
TCACTTCCCGCGGGTGTCCACCGCTCTCACCGGACTCATAGCGTCCCCGG
ACGTTGCCCCCGAGATCTGCGGTCGGGTGCTCCAGTGCCTCGGCTTCCTC
CTCAAGTTCGTGGCGCGCCCCCTGTCGAAGGACATGGCAGCCGTGAGGGC
GCTCTACGCCCCGCTCCTGGGGCACAAGAGAGACTTCGCGAGGAAGATGG
CGGCGCAGACGCTGGCGCCCGCGGTGCGGCGCCTGAAGCCGAAGGCCATG
CGGCGGCACGCGAAGCAGCTGGTCGGGGCTCTCGCGACGGGGAGC