mRNA_E_fasciculatus_S2_contig9761.17757.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI) HSP 1 Score: 187 bits (475), Expect = 3.250e-58 Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1
Query: 7 RLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPWPC 279
RLWFNIG+VCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALN+SLW VWGFLTPLILFAVFIGCLFSLHFVPWPC
Sbjct: 149 RLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC 239
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.780e-40 Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 1
Query: 7 RLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPWPC 279
R WFN+ CF+VN VI+ YLT+WLP V+ + WN+Y PRAIP AT VG+IC ++LN++LW VWGFLTPLIL VF+GCLF LHFVPWPC
Sbjct: 69 RPWFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVPWPC 159
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.930e-33 Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
HR++FNIG+VCF +N I YL VWLP+V+ I + W+VY PR IPTATVVGL+CAL L + LW VWGF TP ILF +F+G L + HF+P
Sbjct: 82 HRIYFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN3_9STRA) HSP 1 Score: 121 bits (303), Expect = 6.690e-33 Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
HR++FNIG+VCF +NA I YL++WLP+V+ I + W+VY PR +PTATVVG++CAL V LW VWGF TP ILF +F+G L + HF+P
Sbjct: 89 HRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.120e-32 Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
HR++FN+G+VCF +N I YL +WLP+V+ I + WNVY PR +PTAT+VG++CAL + LW VWGF TP ILF +F+G L + HF+P
Sbjct: 87 HRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Transmembrane (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.480e-31 Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
HRL+FNIG+VCF +N I YL VWLP+V+ I + W+VY PR IPTAT++G++CAL + LW VWGF TP ILF +F+G L + HF+P
Sbjct: 75 HRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Aste57867_8441 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA) HSP 1 Score: 115 bits (289), Expect = 8.310e-31 Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
HR++FNIG+VCF +N I YL VWLP+++ I + W+VY PR +PTAT VGL+CAL + LW VWG TP ILF +F+G L + HF+P
Sbjct: 87 HRVYFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y508_PHATC) HSP 1 Score: 92.8 bits (229), Expect = 8.720e-22 Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1
Query: 1 SHRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVS--WNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPW 273
++R + + F +N V+L YLTV+LP ++G+ S W VY PR +PT T VG++ L L + W VWGFL PL+L F+G LF LHFVPW
Sbjct: 80 ANRPLLQVAALSFGINTVLLLYLTVYLPKIKGLTDSSAWEVYCPRVVPTMTFVGVVTGLLLIRATWPVWGFLAPLVLGVEFLGLLFGLHFVPW 172
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PJ36_PHYPN) HSP 1 Score: 90.1 bits (222), Expect = 1.550e-21 Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 13 WFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
+F + +VC +N I AYL V+LP+++ I++ W+VY PR IPTAT+VG++ A + W +WG LTP +L +FIG L HF+P
Sbjct: 16 FFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAFCYICAFWPIWGLLTPGLLGLLFIGALMMAHFLP 101
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9E4I8_PHYPR) HSP 1 Score: 91.3 bits (225), Expect = 3.320e-21 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 7 RLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
R +F + +VC +N I AYL V+LP+++ I++ W+VY PR IPTAT+VG++ A + W +WG LTP +L +FIG L + HF+P
Sbjct: 83 RGFFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAFCYICAFWPIWGLLTPGLLGLLFIGALMTAHFLP 170 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9761.17757.1 >prot_E_fasciculatus_S2_contig9761.17757.1 ID=prot_E_fasciculatus_S2_contig9761.17757.1|Name=mRNA_E_fasciculatus_S2_contig9761.17757.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp SHRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVback to top mRNA from alignment at E_fasciculatus_S2_contig9761:285..1233+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9761.17757.1 ID=mRNA_E_fasciculatus_S2_contig9761.17757.1|Name=mRNA_E_fasciculatus_S2_contig9761.17757.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=949bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9761:285..1233+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9761:285..1233+ >mRNA_E_fasciculatus_S2_contig9761.17757.1 ID=mRNA_E_fasciculatus_S2_contig9761.17757.1|Name=mRNA_E_fasciculatus_S2_contig9761.17757.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9761:285..1233+ (Ectocarpus fasciculatus EfasUO2)back to top |