mRNA_E_fasciculatus_S2_contig9761.17757.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9761.17757.1
Unique NamemRNA_E_fasciculatus_S2_contig9761.17757.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 3.250e-58
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    7 RLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPWPC 279
            RLWFNIG+VCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALN+SLW VWGFLTPLILFAVFIGCLFSLHFVPWPC
Sbjct:  149 RLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC 239          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.780e-40
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    7 RLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPWPC 279
            R WFN+   CF+VN VI+ YLT+WLP V+ +   WN+Y PRAIP AT VG+IC ++LN++LW VWGFLTPLIL  VF+GCLF LHFVPWPC
Sbjct:   69 RPWFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVPWPC 159          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.930e-33
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            HR++FNIG+VCF +N  I  YL VWLP+V+ I + W+VY PR IPTATVVGL+CAL L + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   82 HRIYFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.690e-33
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            HR++FNIG+VCF +NA I  YL++WLP+V+ I + W+VY PR +PTATVVG++CAL   V LW VWGF TP ILF +F+G L + HF+P
Sbjct:   89 HRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.120e-32
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            HR++FN+G+VCF +N  I  YL +WLP+V+ I + WNVY PR +PTAT+VG++CAL   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   87 HRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Transmembrane (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.480e-31
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            HRL+FNIG+VCF +N  I  YL VWLP+V+ I + W+VY PR IPTAT++G++CAL   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   75 HRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Aste57867_8441 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.310e-31
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    4 HRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            HR++FNIG+VCF +N  I  YL VWLP+++ I + W+VY PR +PTAT VGL+CAL   + LW VWG  TP ILF +F+G L + HF+P
Sbjct:   87 HRVYFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y508_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 8.720e-22
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 SHRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVS--WNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPW 273
            ++R    +  + F +N V+L YLTV+LP ++G+  S  W VY PR +PT T VG++  L L  + W VWGFL PL+L   F+G LF LHFVPW
Sbjct:   80 ANRPLLQVAALSFGINTVLLLYLTVYLPKIKGLTDSSAWEVYCPRVVPTMTFVGVVTGLLLIRATWPVWGFLAPLVLGVEFLGLLFGLHFVPW 172          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PJ36_PHYPN)

HSP 1 Score: 90.1 bits (222), Expect = 1.550e-21
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   13 WFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            +F + +VC  +N  I AYL V+LP+++ I++ W+VY PR IPTAT+VG++ A     + W +WG LTP +L  +FIG L   HF+P
Sbjct:   16 FFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAFCYICAFWPIWGLLTPGLLGLLFIGALMMAHFLP 101          
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9E4I8_PHYPR)

HSP 1 Score: 91.3 bits (225), Expect = 3.320e-21
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    7 RLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVP 270
            R +F + +VC  +N  I AYL V+LP+++ I++ W+VY PR IPTAT+VG++ A     + W +WG LTP +L  +FIG L + HF+P
Sbjct:   83 RGFFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAFCYICAFWPIWGLLTPGLLGLLFIGALMTAHFLP 170          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9761.17757.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.250e-5896.70protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7... [more]
Uncharacterized2.780e-4064.84protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.930e-3360.67protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized6.690e-3358.43protein n=4 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized5.120e-3255.06protein n=2 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Transmembrane1.480e-3157.30protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Aste57867_84418.310e-3155.06protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Predicted8.720e-2247.31protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
Uncharacterized1.550e-2145.35protein n=1 Tax=Phytophthora parasitica (strain IN... [more]
Uncharacterized3.320e-2145.45protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9E4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9761contigE_fasciculatus_S2_contig9761:285..1233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score186.0
Seed ortholog evalue7.9e-45
Seed eggNOG ortholog2880.D8LGK7
Model size282
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG OGs2BN0F@1,2S1N7@2759
Cds size282
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.7116675-CDS-E_fasciculatus_S2_contig9761:284..4571696842619.7116675-CDS-E_fasciculatus_S2_contig9761:284..457Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9761 285..457 +
1696842619.726702-CDS-E_fasciculatus_S2_contig9761:1124..12331696842619.726702-CDS-E_fasciculatus_S2_contig9761:1124..1233Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9761 1125..1233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9761.17757.1prot_E_fasciculatus_S2_contig9761.17757.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9761 285..1233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9761.17757.1

>prot_E_fasciculatus_S2_contig9761.17757.1 ID=prot_E_fasciculatus_S2_contig9761.17757.1|Name=mRNA_E_fasciculatus_S2_contig9761.17757.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp
SHRLWFNIGVVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATV
VGLICALALNVSLWGVWGFLTPLILFAVFIGCLFSLHFVPWPC*
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mRNA from alignment at E_fasciculatus_S2_contig9761:285..1233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9761.17757.1 ID=mRNA_E_fasciculatus_S2_contig9761.17757.1|Name=mRNA_E_fasciculatus_S2_contig9761.17757.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=949bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9761:285..1233+ (Ectocarpus fasciculatus EfasUO2)
TCCCACAGGTTATGGTTTAATATCGGGGTGGTGTGCTTCAGTGTTAACGC GGTGATTTTGGCGTACTTGACGGTGTGGCTGCCGCACGTGAGAGGCATCC GGGTGTCGTGGAACGTGTACAGCCCAAGAGCCATCCCTACGGCTACTGTT GTCGGGCTGATCTGCGCTTTGGCGTGAGTGTCGGTGCTACCTGCGTCACC CGTTGCGTCAAATTTGATTTTTAGCCTTGTTGCCTGAGGAAAGGCTCAAG CACGCTCGCGAGATAATCTAGAAGGTTTGCTTGACGCCATCTTGTTCGCG AACAGCTTACCGTAAGACGAAGGCTGTGTGGAAAAATGCGCGTATTCTTT AGTTCCGCCATGCACGCCGTCATGTTTGTGTTGGGAGTATTTTACGAACT CTTGTCTCCTCACCACTCTGACACCCCGGGTACATGGGTTGCCCGCGAAG TCCACACAAGATTGTTTGCTGTATCTCCTCGCACAGTCTGTAGTGGTGTA TTCGGCGGCGGTCCTACTCCACAGCAATAGGGTGAGCCGGAGACAACGTC CACCACGACAGCCTTTCCGTGTTCATGTTCTTGGTGCTAGGGGTCGTGAC GTAGACACAACTCTCTCATCCCATGGACTTCATTGCGCACACCTAGCTGA GAACAATGCGCTTGACTTCGCTTCCTGCCTATCCTTCGATGTGCCTGTAA CCCGCACCTGGGACGTCTTACCTCGGACCTCGTCCAATGGCAGCACTCCC GTCGAAACGACACACGGTATTTTCGTTCGTTACAACACTGCTTTTCGCCC GTTTGGTACCCCTGCCTGCTTCCATCGCATCGCATCGCAGGCTGAATGTT TCATTGTGGGGTGTGTGGGGATTCCTGACACCGCTCATCCTGTTCGCGGT CTTCATCGGCTGCTTGTTTAGCCTGCACTTCGTGCCTTGGCCTTGTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9761:285..1233+

>mRNA_E_fasciculatus_S2_contig9761.17757.1 ID=mRNA_E_fasciculatus_S2_contig9761.17757.1|Name=mRNA_E_fasciculatus_S2_contig9761.17757.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9761:285..1233+ (Ectocarpus fasciculatus EfasUO2)
TCCCACAGGTTATGGTTTAATATCGGGGTGGTGTGCTTCAGTGTTAACGC
GGTGATTTTGGCGTACTTGACGGTGTGGCTGCCGCACGTGAGAGGCATCC
GGGTGTCGTGGAACGTGTACAGCCCAAGAGCCATCCCTACGGCTACTGTT
GTCGGGCTGATCTGCGCTTTGGCGCTGAATGTTTCATTGTGGGGTGTGTG
GGGATTCCTGACACCGCTCATCCTGTTCGCGGTCTTCATCGGCTGCTTGT
TTAGCCTGCACTTCGTGCCTTGGCCTTGTTAA
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