mRNA_E_fasciculatus_S2_contig9759.17753.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9759.17753.1
Unique NamemRNA_E_fasciculatus_S2_contig9759.17753.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 6.030e-119
Identity = 218/372 (58.60%), Postives = 263/372 (70.70%), Query Frame = 1
Query:    1 PLTACMDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPLNIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVHSRWFRKRYHSPETQ-ATDYVFDMQMALHPTTAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRARPTP-PGTVHPVFARSGNKQEEATTAACVSLGLFTK---GGGAVQGPTLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            PL    +EI+ELYSLIKPVAELIV CQQT VP GQAA++ LATLKL+T NV+  L+++TP R  AQG   G GGGERK TS PR    LT V   AR  L  A+  R+F + Y S +++  TD+VFDMQM LHPTTA L+YVD L ST  +AA VK +ITDKI+ALAVEL +++ ER+    A   Q    AKRARP   PG++    A++ NK+++A TA   SLGLF K   GG A Q PT E   RAEL+TL+ V+AG+L  +++ + VL+WWK+W   YPLLAR ARVVFGAPASAAVLERDF+DA  MM SSRS+ D KYVEMVLFLHGNLDLIPE IPEL  E    VQ KIPGRL++P PEL  L
Sbjct:  281 PLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVR--AQGWPEGTGGGERKATSVPRLHNHLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQ---AGPEQDESVAKRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLFKKRRGGGEASQQPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDE---DVQAKIPGRLSNPIPELHGL 644          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 4.490e-109
Identity = 208/369 (56.37%), Postives = 253/369 (68.56%), Query Frame = 1
Query:    1 PLTACMDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPLNIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVHSRWFRKRYHSPETQATDYVFDMQMALHPTTAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRA-RPTPPGTVHPVFARSGNKQEEATTAACVSLGLF-TKGGGAVQGPTLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            PL+  + EI+ELYSLI+PVAE+I  CQQT  P GQAA++ LA LKL+TLN + PL+I+TPA K  QG T G GG E++TT+  R  ++LT V  +AR  L  A+H R F KRY S   ++T  VFDMQM LHP TA L+YV  LA T  +AA VK  ITDKI+ALA +L  +  ER+G E     QG PAAKRA + + PG  +P+FA +   +E  TTA    LGL  T+  G    P   ER RAEL+TL+S    +L G+ + + VL WWKR E SYPLLARVARVVF APAS  V ERD   AGRMMTSSRS+ D KYVEMVLFLHGN+DL+PE IPELPA+G N VQTKIPGRL++P  EL  L
Sbjct:  389 PLSPHVHEIDELYSLIQPVAEVIATCQQTHFPTGQAAVLGLAALKLSTLNADAPLDILTPASKPTQGATEGAGG-EQRTTA--RAHKDLTRVGREAREHLASALHWRDFDKRYKSTVAKSTGLVFDMQMGLHPCTADLQYVSRLAPTEGHAAVVKKNITDKIIALAAKLADKKAERKGIEA---EQGEPAAKRAPQASAPGNTYPMFASARYHKEATTTAIMAGLGLIATRDEGTSASPI--ERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHAL 749          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 7.340e-99
Identity = 196/372 (52.69%), Postives = 240/372 (64.52%), Query Frame = 1
Query:    1 PLTACMDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPLNIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVHSRWFRKRYHSPETQATDYVFDMQM-ALHPT-TAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRARPTP-PGTVHPVFARSGNKQEEATTAACVSLGLFTKGGGAV--QGPTLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            PLT+  +EI+ELYS+IKP A++IV CQQT VP GQ A++ALA LKL TLNV+ PL I+TPARKLAQ  T+G+GGGER  TS PR     T VA   R  + ++V   WF KRY S E+Q TDYV   +     P  T A  +   +++TP                              G  AAD    PAAKRAR    PG+VHP+F    NK+EEATT    SLGLF  GG     + P+ E+  RAEL  L++VQ GSLA  ++ + VL+WWK W  +YPLLARVARVVFGAPASAAVLERDFS+AGRMMTSSRS+ D+KYVEM++FLHGNLDLIPEDI +L      + +TKIPGRLA+P   LE+L
Sbjct:  368 PLTSLTEEIDELYSIIKPAAQVIVKCQQTSVPTGQVAVLALAALKLITLNVDSPLEILTPARKLAQAETSGIGGGERPATSTPREHSLSTGVAKGTRQHICESVDWWWFDKRYKSAESQDTDYVSTCRWPCTRPRLTCAALHTGDVSTTP-----------------------------AGSAAADE---PAAKRARQAAAPGSVHPLFKAPVNKREEATTNMYASLGLFGPGGDEQNEEPPSFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEA---AARTKIPGRLANPVERLEQL 704          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 1.420e-83
Identity = 179/371 (48.25%), Postives = 215/371 (57.95%), Query Frame = 1
Query:    1 PLTACMDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPLNIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVHSRWFRKRYHSPETQATDYVFDMQMALHPTTAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRARPTP-PGTVHPVFARSGNKQEEATTAACVSLGLFTK---GGGAVQGPTLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            PL     +I+ELYS+IKPVAELIV  QQT VP GQAA + LA LKL+T NV+  L+++TPAR  AQG   G GG E K TS PR  +   S  +                          TD+VFDMQM LHPTTA L+YVD LAS+  +AA V   ITDKI+ LAVEL  ++ ER+    A   Q    AK+ARP   P + HP  AR+ NK E+A TA   SL LF K   G  A Q PT E    AE +TL+ V+AGSL  ++  + VL+WW++WE SYPLLAR ARV FGAPA+                      D KYVEMVLFLHG LDL PE IPEL  E    +  KIPGRL++P PEL  L
Sbjct:  107 PLAPHEHDIDELYSVIKPVAELIVTYQQTHVPTGQAAALGLAALKLSTFNVDARLDVLTPAR--AQGRPEGAGGVEPKATSVPRCYKPADSAKT--------------------------TDFVFDMQMGLHPTTADLQYVDKLASSKVHAAFVTKRITDKIITLAVELATKEMERKQ---AGPEQHESVAKQARPAAAPKSSHPAVARARNKNEDAATAKFTSLRLFKKRRVGANASQQPTFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPAAG---------------------DAKYVEMVLFLHGKLDLFPEQIPELRDE---DIHAKIPGRLSNPVPELHGL 422          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.880e-75
Identity = 168/371 (45.28%), Postives = 205/371 (55.26%), Query Frame = 1
Query:    1 PLTACMDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPLNIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVHSRWFRKRYHSPETQATDYVFDMQMALHPTTAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGA----PAAKRARPTPPGTVHPVFARSGNKQEEATTAACVSLGLFTKGGGAVQGPTLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            PLT+  DEI+EL+ +IKP A++IV                                                  GER  TS PR    LT VA   R  + ++V  RWF KRY S ++Q TDYVFDMQMALHPTTA L YVD LAST  +A  VK+ ITDK+++LAV+L +      G      +  A    PAAKRAR           A  G+K+E                      P+ E+  RAEL  L++VQ GSLA  +  + VL+WWK W  +YPLLARVARVV GA ASAAVLE DFS+AGRMMTSSRS+ D+KYVEM+LFLHGNLDLIPEDI +L        +TKIPGRLA+P   LE+L
Sbjct:  189 PLTSLTDEIDELHYIIKPAAQVIV-------------------------------------------------SGERPATSTPREHSLLTGVARGTRQHMCESVDWRWFDKRYKSAKSQDTDYVFDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAVKLAEAAALHTGDGSTTPAWSAAADKPAAKRARQA---------AAPGSKEEP---------------------PSFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEA---VARTKIPGRLANPVEGLEQL 477          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.290e-64
Identity = 136/268 (50.75%), Postives = 164/268 (61.19%), Query Frame = 1
Query:  304 QAVHSRWFRKRYHSPETQATDYVFDMQMALHPTTAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRARPTPPGTVHPVFARSGNKQEEATTAACVSLGLFTKG--GGAVQGPTLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            ++V  R F KRY S E+Q TDYVFDMQMALHPTTA L YV+ LAST  +A  VK+ ITDK++ L V L +      G     D    PA                       EEATT    SLGLF  G  G   +  + ++  RAEL  L++VQ G LA  +  + VL+WWK W  +YPLLARVARVVFGAPASAAVLE  FS+AGRM TSSRS+ D+ YVEM++FLHGNL+LIPEDI +L        +TK PGRLA+P   LE L
Sbjct:    3 ESVDWRRFDKRYKSAESQDTDYVFDMQMALHPTTAGLRYVEKLASTSAFAGAVKSTITDKVIFLTVRLAEAAALHTG-----DGSTTPAG----------------------EEATTNMHASLGLFGPGVDGQNEEPQSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEV---VARTKFPGRLANPVDGLEPL 240          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 9.260e-39
Identity = 127/380 (33.42%), Postives = 188/380 (49.47%), Query Frame = 1
Query:    1 PLTACMDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPLNIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVHSRWFRKRYHSPETQA--TDYVFDMQMALHPTTAALEYVDSLASTPEYAATVKTAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRARPTPPGTVHPVFARSGNKQEEAT---TAACVSLGLFTKGGGAVQ---GP---TLEERVRAELKTLQSVQAGSLAGEMAPKLVLQWWK-RWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEELS 1104
            PL      IEELYSL+KP++ ++   Q+  +P G +   AL  L+  TL+V KPL +  P RK+     A        TT+  R  + L  V +  R  L  A+  R+F KRY +       +DYVF+M   + P    L ++ S+ S+ E A  V   I  K+V L V+L +      G     D+ GA A+            P F RS       T   T   +  G+F     +     GP   T++E  + E     +  A +   +   +++L++W    ++ YP +AR ARV+   PAS+AVLERDFS AGR++T +RS     YVEMVLFL+GN + IP ++P+L     +  Q  +P RL++PN E E LS
Sbjct:  450 PLAQHKTVIEELYSLMKPISVIMKESQEKGLPTGLSTFAALVMLRADTLDVTKPLEVTVP-RKVTTTDWART----LATTTIERPADSLQDVTTTTRTMLAAALDKRFFSKRYDANVVAVPPSDYVFEMAACMSPALHTLPWLTSMCSSDEEAGRVHKLIKGKVVDLMVKLAEGAGAYPGKATEGDTSGASAS----------APPPFKRSRGPLTVGTSERTKRLLKSGVFGGSKSSTSRDDGPSELTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKL---SKSQGQEAVPRRLSNPNEETERLS 811          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.770e-35
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  781 EMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNS 1044
            E++   VL+WWKRW SSYPLLAR ARVVFGAPASAAVLE DF DAGR+MTSSRS+TD KYVEM+LFLHGNLDLIPEDIP      P++
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPTAPSA 118          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.860e-30
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 1
Query:  820 WESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTD-TKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPGRLADPNPELEEL 1101
            W   YPLLARVARVVFGAPASAAVLERDFS+AGRMMTSSR + D T YVEM+LFLHGNLDLIPEDI +L        ++KIPGRLA+P   LE+L
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEA---VARSKIPGRLANPVEGLEQL 93          
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.320e-27
Identity = 61/109 (55.96%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  781 EMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDAGRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTK-IPGRLADPNPELEELS 1104
            E++ + VL+WWKRW SSYPLLAR  RVVFGAPASAA                       YVEM+LFLHGNLDLIP+DIP LP +GP+S   K +PGRL +PNP+LE +S
Sbjct:   31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERIS 116          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9759.17753.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dimer_Tnp_hAT6.030e-11958.60domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Dimer_Tnp_hAT4.490e-10956.37domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Dimer_Tnp_hAT7.340e-9952.69domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.420e-8348.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Dimer_Tnp_hAT3.880e-7545.28domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT1.290e-6450.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT9.260e-3933.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT4.770e-3575.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT3.860e-3071.58domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT2.320e-2755.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9759contigE_fasciculatus_S2_contig9759:1570..2673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score68.2
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog8479.XP_005314129.2
Preferred nameDref
Model size1104
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0001012,GO:0001067,GO:0001654,GO:0001745,GO:0003254,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005694,GO:0005700,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007049,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0008356,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0016043,GO:0016070,GO:0016310,GO:0016358,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0022402,GO:0022416,GO:0022603,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032042,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042023,GO:0042127,GO:0042391,GO:0042592,GO:0042981,GO:0043067,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044786,GO:0045035,GO:0045893,GO:0045935,GO:0046483,GO:0046777,GO:0046872,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0051052,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051301,GO:0051726,GO:0051881,GO:0051900,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090596,GO:0097159,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000026,GO:2000027,GO:2000112,GO:2000278,GO:2000495,GO:2001141
Exons1
EggNOG free text desc.zinc finger
EggNOG OGs39RW9@33154,3BH13@33208,3D40F@33213,48425@7711,4931H@7742,4CH37@8459,KOG1121@1,KOG1121@2759,KOG2461@1,KOG2461@2759
Cds size1089
COG Functional cat.L
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.3711088-CDS-E_fasciculatus_S2_contig9759:1569..26581696842619.3711088-CDS-E_fasciculatus_S2_contig9759:1569..2658Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9759 1570..2658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.3885145-UTR-E_fasciculatus_S2_contig9759:2658..26731696842619.3885145-UTR-E_fasciculatus_S2_contig9759:2658..2673Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9759 2659..2673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9759.17753.1prot_E_fasciculatus_S2_contig9759.17753.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9759 1570..2658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9759.17753.1

>prot_E_fasciculatus_S2_contig9759.17753.1 ID=prot_E_fasciculatus_S2_contig9759.17753.1|Name=mRNA_E_fasciculatus_S2_contig9759.17753.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=363bp
MDEIEELYSLIKPVAELIVLCQQTRVPAGQAALIALATLKLTTLNVNKPL
NIITPARKLAQGGTAGVGGGERKTTSAPRGPEELTSVASQARVQLEQAVH
SRWFRKRYHSPETQATDYVFDMQMALHPTTAALEYVDSLASTPEYAATVK
TAITDKIVALAVELKQRDEEREGGEGAADSQGAPAAKRARPTPPGTVHPV
FARSGNKQEEATTAACVSLGLFTKGGGAVQGPTLEERVRAELKTLQSVQA
GSLAGEMAPKLVLQWWKRWESSYPLLARVARVVFGAPASAAVLERDFSDA
GRMMTSSRSSTDTKYVEMVLFLHGNLDLIPEDIPELPAEGPNSVQTKIPG
RLADPNPELEELS
back to top

mRNA from alignment at E_fasciculatus_S2_contig9759:1570..2673-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9759.17753.1 ID=mRNA_E_fasciculatus_S2_contig9759.17753.1|Name=mRNA_E_fasciculatus_S2_contig9759.17753.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1104bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9759:1570..2673- (Ectocarpus fasciculatus EfasUO2)
CCGCTGACGGCGTGCATGGACGAGATCGAGGAGCTGTACTCCCTCATCAA GCCGGTGGCGGAACTCATCGTCCTGTGCCAACAAACCCGCGTCCCCGCGG GCCAAGCTGCGTTGATCGCCCTGGCGACGCTCAAGCTCACCACGTTGAAC GTCAACAAGCCGCTCAACATCATCACGCCGGCGCGCAAGCTTGCTCAGGG TGGGACGGCAGGCGTGGGCGGCGGGGAACGGAAGACGACGAGCGCTCCAC GGGGGCCCGAGGAGCTGACCTCCGTGGCCAGCCAAGCTCGTGTTCAACTC GAGCAGGCTGTCCACTCGCGCTGGTTCCGAAAGCGGTACCACTCGCCGGA AACCCAAGCCACGGACTACGTGTTTGACATGCAGATGGCCCTCCACCCGA CCACGGCGGCCCTCGAATACGTGGACTCGCTCGCCTCGACACCCGAATAT GCGGCGACGGTTAAGACGGCCATCACGGACAAGATCGTCGCCTTGGCGGT GGAGCTGAAGCAGAGGGACGAAGAACGGGAGGGGGGGGAGGGCGCGGCGG ACAGCCAAGGCGCACCAGCTGCAAAGCGGGCACGCCCGACGCCTCCCGGC ACGGTACACCCGGTCTTCGCCCGTTCCGGAAACAAGCAGGAGGAGGCGAC CACTGCCGCATGTGTCAGCCTAGGACTCTTCACGAAGGGGGGTGGCGCAG TACAGGGGCCCACGCTCGAGGAGCGCGTTCGTGCGGAACTCAAGACGCTG CAGTCTGTTCAGGCTGGCTCACTGGCGGGCGAGATGGCACCCAAGCTTGT GCTTCAGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTGGCCCGGG TAGCTCGCGTGGTGTTCGGAGCTCCAGCGTCGGCGGCGGTGCTTGAGCGT GACTTCAGCGATGCTGGTCGCATGATGACGTCATCGAGAAGCAGCACCGA CACCAAGTACGTGGAAATGGTCCTCTTTCTGCATGGCAACCTGGACCTGA TTCCCGAGGACATCCCAGAGCTGCCAGCCGAGGGACCCAACAGTGTCCAA ACCAAGATCCCCGGTCGGTTGGCTGACCCTAATCCGGAGCTAGAGGAGCT GTCT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9759:1570..2673-

>mRNA_E_fasciculatus_S2_contig9759.17753.1 ID=mRNA_E_fasciculatus_S2_contig9759.17753.1|Name=mRNA_E_fasciculatus_S2_contig9759.17753.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1089bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9759:1570..2673- (Ectocarpus fasciculatus EfasUO2)
ATGGACGAGATCGAGGAGCTGTACTCCCTCATCAAGCCGGTGGCGGAACT
CATCGTCCTGTGCCAACAAACCCGCGTCCCCGCGGGCCAAGCTGCGTTGA
TCGCCCTGGCGACGCTCAAGCTCACCACGTTGAACGTCAACAAGCCGCTC
AACATCATCACGCCGGCGCGCAAGCTTGCTCAGGGTGGGACGGCAGGCGT
GGGCGGCGGGGAACGGAAGACGACGAGCGCTCCACGGGGGCCCGAGGAGC
TGACCTCCGTGGCCAGCCAAGCTCGTGTTCAACTCGAGCAGGCTGTCCAC
TCGCGCTGGTTCCGAAAGCGGTACCACTCGCCGGAAACCCAAGCCACGGA
CTACGTGTTTGACATGCAGATGGCCCTCCACCCGACCACGGCGGCCCTCG
AATACGTGGACTCGCTCGCCTCGACACCCGAATATGCGGCGACGGTTAAG
ACGGCCATCACGGACAAGATCGTCGCCTTGGCGGTGGAGCTGAAGCAGAG
GGACGAAGAACGGGAGGGGGGGGAGGGCGCGGCGGACAGCCAAGGCGCAC
CAGCTGCAAAGCGGGCACGCCCGACGCCTCCCGGCACGGTACACCCGGTC
TTCGCCCGTTCCGGAAACAAGCAGGAGGAGGCGACCACTGCCGCATGTGT
CAGCCTAGGACTCTTCACGAAGGGGGGTGGCGCAGTACAGGGGCCCACGC
TCGAGGAGCGCGTTCGTGCGGAACTCAAGACGCTGCAGTCTGTTCAGGCT
GGCTCACTGGCGGGCGAGATGGCACCCAAGCTTGTGCTTCAGTGGTGGAA
GAGATGGGAGAGCTCGTACCCACTCCTGGCCCGGGTAGCTCGCGTGGTGT
TCGGAGCTCCAGCGTCGGCGGCGGTGCTTGAGCGTGACTTCAGCGATGCT
GGTCGCATGATGACGTCATCGAGAAGCAGCACCGACACCAAGTACGTGGA
AATGGTCCTCTTTCTGCATGGCAACCTGGACCTGATTCCCGAGGACATCC
CAGAGCTGCCAGCCGAGGGACCCAACAGTGTCCAAACCAAGATCCCCGGT
CGGTTGGCTGACCCTAATCCGGAGCTAGAGGAGCTGTCT
back to top