mRNA_E_fasciculatus_S2_contig974.17737.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig974.17737.1
Unique NamemRNA_E_fasciculatus_S2_contig974.17737.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig974.17737.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 5.140e-84
Identity = 283/376 (75.27%), Postives = 291/376 (77.39%), Query Frame = 1 
Query:    1 MVEVMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNHEGSGPAGTTGVVGAGAGGSSSGPVNAPPAPHPGGGGVPRVDTNSGAVPSEGAGAGAAGXXXXXGSGESSLKREFVGGMMNGAPPNASPRGSAAAAPTGGDSRVAVAASTASSPPSLXXXXXXXXXXXXX----GGGATMRLQSLADLATKELQHMYEVDEADT-GTHNRXXXXXXXXXXXXXXXXX---------SGFSPKRHLSPRLSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSHHHHLRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKGGRIDSIKEELEVTL 1086
            MVE+MD  REVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQN EG GPAGTTG                          V  V T  G VPSEGAG     XXXXX SGES+LKREF GGM+NGA PN S R SAAAA +GGD R A   STASSP   XXXXXXXXXXXXX    GGGA+MRLQSLADLAT+ELQ M +VDE DT G H  XXXXXXXXXXXXXXXXX         +GFSPKRHLSPRLSGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRK GRIDSIKEELEV L
Sbjct:    1 MVEIMDSRREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPEGPGPAGTTGXXXXXXXXXXXXXXXXXXXXXXXXX-VAHVGTEGGTVPSEGAGXXXXXXXXXXXSGESALKREF-GGMLNGALPNTSYRDSAAAALSGGDPRAATV-STASSPSXXXXXXXXXXXXXXXXXXIGGGASMRLQSLADLATQELQTMCDVDETDTAGAHGXXXXXXXXXXXXXXXXXXXXXRTPPAPAGFSPKRHLSPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEVCL 371
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BLAST of mRNA_E_fasciculatus_S2_contig974.17737.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 1.410e-77
Identity = 229/380 (60.26%), Postives = 235/380 (61.84%), Query Frame = 1 
Query:    1 MVEVMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNHEGSGPAGTTGVVGAGAGGSSSGPVNAPPAPHPGGGGVPRVDTNSGAVPSEGAGAGAAGXXXXXGSGESSLKREFVGGMMNGAPPNASPRGSAAAAPTGGDSRVAVAASTASSPPSLXXXXXXXXXXXXXGGGATMRLQSLADLATKELQHMYEVDEADT-GTHNRXXXXXXXXXXXXXXXXXS---------GFSPKRHLSPRLSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------PSHHHHLRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKGGRIDSIKEELE 1077
            MVE+MDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQ  EG GPAGTTG                                  GAVP EGA      XXXXX SGES+LKREF GG +NGA PNAS R SAAAA  GGD R A A S ASSP S              GG A+MRLQSLADLAT+ELQ M +VDE DT G H                   S         GFSPKRHLSPRLSGG  XXXXXXXXXXXXXXXX        XXXXX           P     LRERGVPRSRHER  XXXXXXXXX         RG RHRPRSVSMPEGMELQARAWSGGYSSGRRK GRIDSIKEELE
Sbjct:    1 MVEIMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQKPEGPGPAGTTGXXXXXXXXXXX---------------XXXXXXXGGAVPPEGAXXXXXXXXXXXXSGESALKREF-GGTVNGALPNASYRDSAAAALPGGDPREA-AVSIASSPSSFSLSTSPRPRSASSGGVASMRLQSLADLATQELQTMGDVDETDTPGIHGHRRHQQHQRSLSNGNSQSSSARTPPLPAGFSPKRHLSPRLSGGGGXXXXXXXXXXXXXXXXVSALSSAAXXXXXCSAPLPPARAAPXXXXXLRERGVPRSRHERXXXXXXXXXXXHAAARAEGGRGMRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE 363
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig974.17737.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
CCT5.140e-8475.27domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CCT1.410e-7760.26domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig974contigE_fasciculatus_S2_contig974:20027..23534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score281.2
Seed ortholog evalue7.4e-73
Seed eggNOG ortholog2880.D8LD77
Model size1155
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.CCT motif
EggNOG OGs2E1UC@1,2S94C@2759
Ec32 ortholog descriptionCCT domain protein
Ec32 orthologEc-05_001470.1
Cds size1155
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig974.17737.1prot_E_fasciculatus_S2_contig974.17737.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig974 20027..23534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.14448-CDS-E_fasciculatus_S2_contig974:20026..200881696842618.14448-CDS-E_fasciculatus_S2_contig974:20026..20088Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 20027..20088 +
1696842618.1651735-CDS-E_fasciculatus_S2_contig974:20698..207801696842618.1651735-CDS-E_fasciculatus_S2_contig974:20698..20780Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 20699..20780 +
1696842618.177129-CDS-E_fasciculatus_S2_contig974:21181..212051696842618.177129-CDS-E_fasciculatus_S2_contig974:21181..21205Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 21182..21205 +
1696842618.1887891-CDS-E_fasciculatus_S2_contig974:21268..214601696842618.1887891-CDS-E_fasciculatus_S2_contig974:21268..21460Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 21269..21460 +
1696842618.1996973-CDS-E_fasciculatus_S2_contig974:21911..221301696842618.1996973-CDS-E_fasciculatus_S2_contig974:21911..22130Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 21912..22130 +
1696842618.2112489-CDS-E_fasciculatus_S2_contig974:22583..230091696842618.2112489-CDS-E_fasciculatus_S2_contig974:22583..23009Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 22584..23009 +
1696842618.224144-CDS-E_fasciculatus_S2_contig974:23384..235341696842618.224144-CDS-E_fasciculatus_S2_contig974:23384..23534Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 23385..23534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig974.17737.1

>prot_E_fasciculatus_S2_contig974.17737.1 ID=prot_E_fasciculatus_S2_contig974.17737.1|Name=mRNA_E_fasciculatus_S2_contig974.17737.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=385bp
MVEVMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNHEGS
GPAGTTGVVGAGAGGSSSGPVNAPPAPHPGGGGVPRVDTNSGAVPSEGAG
AGAAGGADGAGSGESSLKREFVGGMMNGAPPNASPRGSAAAAPTGGDSRV
AVAASTASSPPSLSLSTSPRPRSASSGGGATMRLQSLADLATKELQHMYE
VDEADTGTHNRRHHHHNRSLSNGTPPPPSGFSPKRHLSPRLSGGSGGGRG
VSALSSAAAAVASCSSPSAPAARAAPSHHHHLRERGVPRSRHERAEEEEE
EEEEMRAAARAASGRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKGGR
IDSIKEELEVTLALAFCLRLAFAAAAAAAAVVVGP
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mRNA from alignment at E_fasciculatus_S2_contig974:20027..23534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig974.17737.1 ID=mRNA_E_fasciculatus_S2_contig974.17737.1|Name=mRNA_E_fasciculatus_S2_contig974.17737.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3508bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig974:20027..23534+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGAGGTCATGGACAGGGGAAGGGAGGTCGAATGGAGTCCCGACAT
GGAGCTGGAAGGGTGAGTGATGGAGAGGAGCAGGAGCGAGGGAGAGAGTC
GAAGAGATGGGGGACGGGACGTGGGAGACTGGTCGCCAGTAGTCTAGTGG
ACAAGAGCAGAGAGAGAGAGAGACAGGGAGCAGCAGCCTTCGCAGGCTTT
TTGTATTGTATTCAGGGAATATGTTGGATAAAGTATACAATACGATCGGG
GAAGTTGGGTTAGGGTCAGGGAATAGGGGTATTGTCGGCGTATCCCTTTC
CTGTTATTTTTCCTTGTAGTAGTAGAAGTCATTTCCCGTGAAGGAGGTCC
ACAGGGAGGGAGAGGAGAGAAACAGAGAGAGGGATAAGGACAAGGAGCCT
TGGCCGACCAGATGAGAGGTGGAGCACAGGAAGGGTGTCTCCCGCGACAA
GAACAGGCAGCTATGCACCTACCTCTGTTTTTGGTTACCTGTCATATTTT
GTTCCGTGCAAACAAGCGCGTGGACTCGCACTTAAAACTCTCCACGCCGC
CCTTCTCAGCCTGTTGCAATGCTACATCTCGGTAGTCCGTAGGGCACTCT
TGCGACCAGTCATCACGCACAAATATGTGTGCCTGATTTTTTAACAAGTG
TTGACTGCTGCTGCCGTGACAGGGATGACGCGGAGAAGGCTGCCGCTCTC
TTGCTGGCGGTGGCGCCCCGTAACCGCTCCTTCGACGCGACACAGAACCA
CGAGGTATGTCTGTTTGCAGTACCCGTCGCCCCCTGCAGCACCGGGATAT
ATCCATCACCACCCCCTCTCTTGCCGACACAGCAGTCGTGTTCATGCTTT
ATGCAACGAGAAGGGGCACCGGTCGTGAGAGAGAGAGAGGCGAGTTGCTT
GGGTAGGGACGGGGGGGTCTAGTGGGAGTGGCTCCTCCCACGCTGCACAA
CGATTGCCCGTCCCCACCCCTTTCCTATTCAGCAACCAACCTCTTTGCAG
TACCGTTCCATTCTTCAAGCCGTTGACCAATAAATCCTTATATACCGCCT
GGTCTAACGACTACGGCATGCATGACTATGAGTACACCCCCCCTCCCCCC
CGCCCCTCCCTTCTTTTTTTTGTTCTCCTCCTCCGCGCCACTGCTCACCC
TCCAGGGGTCCGGCCCCGCGGGCACGACCGTCTCTCCCGCCAATGACATT
GACACGACCGACACCAGCACCACGGGGGACACAACGAGCGAGGGAGTAGT
CGGCGCCGGCGCCGGCGGAAGTAGCAGCGGCCCCGTTAACGCACCGCCCG
CGCCACACCCCGGCGGCGGAGGCGTTCCTCGCGTCGACACGAACAGCGGA
GCGGTCCCGTCGGAGGGAGCGGGCGCCGGAGCCGCGGGGGGGGCTGACGG
AGCTGGCTCCGGGGAATCGTCCCTGAAGCGCGAGGTAATAAAATACATCG
GAGGTCTCTCCTTTTTTTTTGTGCGTGTGCTTGTTCGTGACGTGGCTTGA
ACGCCTGCTTGGGAGTTTTTTGCTGACATGGTTCTAGGCGTGTGCCATCG
GGATGTCTCTGTTGTAGTGTGTAGACCCTCTAGTCTAGTTGTTTGGGTGG
AGGAGTGGCGCGATATTGTTGTTTTCGTGGTTTTCCGCCTGCCCTCCTGC
GCCCTGTAAGCCCCCCCCCCCGCCTCCCCATCCATTTTTTATTTTGTGAA
ATCTTCCCGCATCCTTAACGTTGTCAACTAAGAAACGTGTATTTGTGCCG
AACAGGGTATGTCAGTGTGCTTCAGTCACATCCATATGCCCCTGTCCCGC
AGAGAGCAGTGTGTTGCCAACAATTTTCCCTCATCGGCCATTTTTTTTTT
ACTGTTCTGGTCTTTTTCGGGCCTCTGCTTTTCAGTTCGTCGGCGGGATG
ATGAACGGAGCGCCGCCGAACGCTTCGCCTCGCGGCTCCGCTGCCGCCGC
TCCTACCGGCGGGGACTCGAGGGTGGCGGTGGCAGCATCTACCGCCTCGT
CGCCGCCGTCGTTATCGTTGTCGACATCCCCTCGCCCCCGAAGCGCTTCC
AGCGGCGGGGGAGCGACCATGCGGCTGCAGTCGCTCGCGGACCTCGCGAC
GAAGGTATGAAATTATGCAGACACCACTCTGCTGCTGCTGATGCTGCTGC
TGTTGGCTGTTTGTCCCCGGCGGGATATATGTGATGGGCGTGTTTGGCAA
AAGCGGTATGTGTTGCCCCACTGCTGCTGTGCCGAAAGTCTACTGGCGAA
GCTTGGATGGATCGCGGACCTGGCCATAGGATGGATGATGCAGAACACCG
CTGCTGTTGGTGTTTTTGCCCGGGATTTGGTATGCATACGCGTGTTCACC
TTTTTCGTGTTGTCCTGCTGCCGTCAATTCCAAAAGAGTGTATTGTACAC
TGGCGAACATTGGATTTGCATAGCCTCTTTGTAATCTCACCACGCAGGTA
GAGGTTGCTTGCTTTTTTTCCCCGGTGGGCTGCTACTTGCTGCACCACAA
GCGAAATATGCTGGCGTTACACGCTGCTTCCCCGCCTTCCCTCCATCGGT
CCACCAGGAACTCCAACACATGTACGAGGTCGACGAGGCCGACACGGGTA
CTCACAACCGCCGCCACCACCACCACAACCGCAGCCTCAGCAACGGAACC
CCTCCCCCACCCTCGGGATTTTCTCCGAAACGGCACTTATCTCCCCGCCT
TTCCGGCGGCAGCGGCGGCGGCAGAGGCGTTTCTGCCCTGTCGTCGGCAG
CGGCGGCGGTGGCATCGTGTTCGTCGCCGTCGGCGCCTGCGGCGCGCGCT
GCCCCCAGTCACCACCACCACTTGCGGGAGAGAGGGGTCCCCCGCTCCCG
CCACGAGCGGGCCGAGGAGGAGGAGGAAGAGGAGGAGGAAATGCGGGCCG
CCGCCCGGGCCGCCAGCGGGCGGGGGAGGCGACACCGCCCCCGGTCGGTG
TCGATGCCGGAGGGGATGGAGCTCCAGGCCAGGGTGAGTTTCGCTTATTT
AGTCTCGCTCGGCAGTGTGGTGCAACCAGCGTCCTGTAGTATTCAAGTTA
GTTTCAGGGCGCTTGAATGTACTCAAGTTAGTTTCAGGGCGCTGATTGCA
CCACAGCAGGCACGGGGGGTTCCTGAAGAGCAGGGAGGTTTGGGTTTTGG
GTCCTGTTGTCGATCTGCCTGCTGCTGGATTGTTGGTTGTGGCTGTTGCT
GTGGAGCTGTGGCTCGGATCGTTCTTCTTCCCCGTCAGGTGTGGAGAAGC
CCCCCCCCCCCCCCCCCCCACCCCCCCCTCCTCCTGCCTTGTGAGTGTGT
GCTTTCACCATGCCTCCTTATGCCTGCTTGTGACGCTGTGGTGTGGTTCG
TGGGACAGGCGTGGTCGGGAGGCTACTCGTCCGGAAGGAGGAAGGGCGGA
CGGATCGACTCCATCAAGGAAGAGCTCGAGGTAACCCTCGCCCTTGCCTT
TTGTCTTCGCCTTGCGTTTGCCGCCGCCGCTGCTGCTGCTGCGGTTGTTG
TTGGTCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig974:20027..23534+

>mRNA_E_fasciculatus_S2_contig974.17737.1 ID=mRNA_E_fasciculatus_S2_contig974.17737.1|Name=mRNA_E_fasciculatus_S2_contig974.17737.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1155bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig974:20027..23534+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGAGGTCATGGACAGGGGAAGGGAGGTCGAATGGAGTCCCGACAT
GGAGCTGGAAGGGGATGACGCGGAGAAGGCTGCCGCTCTCTTGCTGGCGG
TGGCGCCCCGTAACCGCTCCTTCGACGCGACACAGAACCACGAGGGGTCC
GGCCCCGCGGGCACGACCGGAGTAGTCGGCGCCGGCGCCGGCGGAAGTAG
CAGCGGCCCCGTTAACGCACCGCCCGCGCCACACCCCGGCGGCGGAGGCG
TTCCTCGCGTCGACACGAACAGCGGAGCGGTCCCGTCGGAGGGAGCGGGC
GCCGGAGCCGCGGGGGGGGCTGACGGAGCTGGCTCCGGGGAATCGTCCCT
GAAGCGCGAGTTCGTCGGCGGGATGATGAACGGAGCGCCGCCGAACGCTT
CGCCTCGCGGCTCCGCTGCCGCCGCTCCTACCGGCGGGGACTCGAGGGTG
GCGGTGGCAGCATCTACCGCCTCGTCGCCGCCGTCGTTATCGTTGTCGAC
ATCCCCTCGCCCCCGAAGCGCTTCCAGCGGCGGGGGAGCGACCATGCGGC
TGCAGTCGCTCGCGGACCTCGCGACGAAGGAACTCCAACACATGTACGAG
GTCGACGAGGCCGACACGGGTACTCACAACCGCCGCCACCACCACCACAA
CCGCAGCCTCAGCAACGGAACCCCTCCCCCACCCTCGGGATTTTCTCCGA
AACGGCACTTATCTCCCCGCCTTTCCGGCGGCAGCGGCGGCGGCAGAGGC
GTTTCTGCCCTGTCGTCGGCAGCGGCGGCGGTGGCATCGTGTTCGTCGCC
GTCGGCGCCTGCGGCGCGCGCTGCCCCCAGTCACCACCACCACTTGCGGG
AGAGAGGGGTCCCCCGCTCCCGCCACGAGCGGGCCGAGGAGGAGGAGGAA
GAGGAGGAGGAAATGCGGGCCGCCGCCCGGGCCGCCAGCGGGCGGGGGAG
GCGACACCGCCCCCGGTCGGTGTCGATGCCGGAGGGGATGGAGCTCCAGG
CCAGGGCGTGGTCGGGAGGCTACTCGTCCGGAAGGAGGAAGGGCGGACGG
ATCGACTCCATCAAGGAAGAGCTCGAGGTAACCCTCGCCCTTGCCTTTTG
TCTTCGCCTTGCGTTTGCCGCCGCCGCTGCTGCTGCTGCGGTTGTTGTTG
GTCCT
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