mRNA_E_fasciculatus_S2_contig9737.17733.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9737.17733.1
Unique NamemRNA_E_fasciculatus_S2_contig9737.17733.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: PX (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA8_9PHAE)

HSP 1 Score: 1004 bits (2597), Expect = 0.000e+0
Identity = 640/965 (66.32%), Postives = 669/965 (69.33%), Query Frame = 1 
Query:    1 GTIRGKSLHGQPRVVTGRFPVEASSDEDGAELNRRHVSNSSPHELLVGENEATAGSGTVAVNVLGNVLLGTTATAVAYDARLRLCSDVLHFRGKGLRPGAFLFLAVPDAAGGDTSRDGRIKGSLSGSTSXXXXXXXXXXXXXXXGCAKGLDADDLSVAA-ETTRGSRGTGVGVGPNADDAPGXXXXXXXXXXXXXXXXXXXXXXXXXSRQHAQAAGVGEEE-----------------EDSQRRTSRLPSPTRRTGSVERGLAGRDDAEGGGGELWVTDESAPLLQALSSQWAAWAAPPADDAESSAAANTRRSAHTAAALTPHGAVGGTSTTALEGLRNDHSASIDPALPATVTLRVMPSGRVPLPPLCCGVCGSSWETDPFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAALSNGGRARGGEGERIPEHRRVLHFLLPKPPTRTFGMLRLFPEKMERLRREQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMSPPKPRRRGGRGVGKSPTLRAVAPYSTASEPPTXXXXXXXXRGTTGRRMADCQRGQAXXXXXXXXXXXXXX------------------------------------------------------------------DV--EGEPRAATDKEEEVVVRKVEGVNALEQAAHGGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGVHLYPLVERVRAYHDQGFASRVAFRRLRCPRPAESRARLEEFSRQVEGKNYGVVLPFTPSGPKGDRSRPKHAPPXXXXXXXXXXXXIEXXXXXXXXXXXXXXXXXDKHGDGTQGGRVALEGMRGKRPAFTVPKEEEEEEMVVLANAADRGQGLRESATPNALGETTTLPSFSSAKSETTALSPSYLCSQLVGAALSQMGVLRGGXXXXXXDLGWLWVVPGAFGQGGAVDSRLAAGVALGEEV 2637
            GT+RGK LH QPR+VTGRFP  ASSDE GAELNRRHV NSS HEL  GENEA AGSGTVA NV G+ L GTTATAVAYDARLRLCSDVLHF GKGLRPGAFLFLAVPDA GGD SRDGR    LSG T XXXXXXXXXXXXXXX  AKGLDADDL VAA ETT GS G GVGVGP  DDA                            R+ A+ AG    +                     RRTSR PSPT R GSVE G AGRD A+G GGELWVTDESAPLL ALSSQWAA AAPPADDAESS AA TRRSAH  AALT HGA GGT TT  +G RNDH   + PA PA VTLR MPSGR PLPPLCCGVCGSSWETD FGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAALS  G ARGGEG+RIPE R      LP PP RTFGMLRLFP KMERLRR QLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLM PP P+ RGG+  GKSPTLRAVAP+S ASE PT        RG+TGRRMAD  RGQA     XXXXXXXXX                                                                  D+  EGEPRAA  +EEEVV RKVE VNALEQ AHGGDVVLFRCRGMLS LQRWVL+TQWDHVGVVV GGPS RLELLESTHGGVHLYPLVERVRAYHDQGFAS VAFRRLRCPRPAESRARLE FSRQVEGK YG+VLP TPSGPK           XXXXX        E                  + GD  +GGR  LEG RG+ PAF V K+EEE  +V+ ANAA  G+G R SAT NA+GETT LP+FSS  SE TALSPSYLCSQLVGAALS+MGVLRGG      DLGWLWV PGAFGQGGAVDSRLAAGVALGEE+
Sbjct:  144 GTLRGKRLHSQPRIVTGRFPEAASSDEVGAELNRRHVPNSSLHELRAGENEAAAGSGTVAGNVPGDGL-GTTATAVAYDARLRLCSDVLHFCGKGLRPGAFLFLAVPDATGGDASRDGRTGSRLSGGTXXXXXXXXXXXXXXXXS-AKGLDADDLVVAAAETTTGSYGAGVGVGPKTDDA------------------SRRAGTGVEGREAAKEAGGRSGDGXXXXXXXXXXXXXXXXXXXXRRTSREPSPTPRAGSVEHGFAGRDGAQGRGGELWVTDESAPLLSALSSQWAASAAPPADDAESSTAAETRRSAH-GAALTSHGATGGTPTTG-KGPRNDHP-QLYPAFPAAVTLRAMPSGRAPLPPLCCGVCGSSWETDSFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAALSGRG-ARGGEGDRIPEDR------LPAPPMRTFGMLRLFPVKMERLRRHQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMFPPNPKCRGGQRAGKSPTLRAVAPHSIASETPTTSSNHTT-RGSTGRRMADSLRGQAAAGESXXXXXXXXXXGVGECDGGATTGQREAGEGEATCFLPPANETAYHSPPPPHGNSDDGLGSARQATENERYREHPAVDMGREGEPRAAAGQEEEVV-RKVERVNALEQEAHGGDVVLFRCRGMLSRLQRWVLRTQWDHVGVVVCGGPSARLELLESTHGGVHLYPLVERVRAYHDQGFASTVAFRRLRCPRPAESRARLEVFSRQVEGKTYGIVLPCTPSGPKXXXXXXXXXXXXXXXXAVQPTMLRESTDSGRG-----------ERGDVARGGRAGLEGTRGQGPAFAVAKKEEE--VVLCANAAGNGEGQRRSATANAIGETTKLPTFSSGTSEKTALSPSYLCSQLVGAALSEMGVLRGGGK----DLGWLWVAPGAFGQGGAVDSRLAAGVALGEEI 1059
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: PX (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF4_ECTSI)

HSP 1 Score: 694 bits (1791), Expect = 3.160e-240
Identity = 408/586 (69.62%), Postives = 426/586 (72.70%), Query Frame = 1 
Query: 1021 MPSGRVPLPPLCCGVCGSSWETDPFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAALSNGGRARGGEGERIPEHRRVLHFLLPKPPTRTFGMLRLFPEKMERLRREQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMSPPKPRRRGGRGVGKSPTLRAVAPYSTASEPPTXXXXXXXXRGTTGRRMADCQRGQAXXXXXXXXXXXXXXDV----------------------------------------EGEPRAATDKEEEVVVRKVEGVNALEQAAHGGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGVHLYPLVERVRAYHDQGFASRVAFRRLRCPRPAESRARLEEFSRQVEGKNYGVVLPFTPSGPKGDRSRPKHAPPXXXXXXXXXXXXIEXXXXXXXXXXXXXXXXXDKHGDGTQGGRVALEGMRGKRPAFTVPKEEEEEEMVVL-------ANAADRGQGLRESATPNALGETTTLPSFSSAKSETTALSPSYLCSQLVGAALSQMGVLRGGXXXXXXDLGWLWVVPGAFGQGGAVDSRLAAGVALGEEV 2637
            MPSGRVPLPPLCCGVCGSSWETD FGRGYRAYHLAVANNASLVWYLQKRFSEFVALHA LS  G ARGGEG+RIPE R      LPKPP RTFGMLRLFPEKMERLRR+QLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLM PP P RRGG+  GKSPTLR+VAP+ST S   T        RG+T RRMADC+RGQA     XXXXXXXXX                                          EGEPRAA  KEEEVV RKVE VNALEQ AHGGDVVLFRCRGMLS LQRWVL+TQWDHVGVVVSGGPSGRL+LLESTHGGVH YPLVERVRAYHDQGFASRVAFRRLRCPRPAESRARLEEFSRQVEGK YG+VLPFTPSGPKGDRSR K    XX           E                  +HGD  +GGR  LE  RG+ PAF V KE                ANAA  G+G R SAT +A+GETTTLPSFSS KSE T LS SYLCSQLVGAALS+MGVLRGG      DLGWLWVVPGAFGQGGAVDSRLAAGVALGEE+
Sbjct:    1 MPSGRVPLPPLCCGVCGSSWETDSFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHATLSGRG-ARGGEGDRIPEDR------LPKPPMRTFGMLRLFPEKMERLRRDQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMFPPNPNRRGGQRAGKSPTLRSVAPHSTTSGNHTA-------RGSTSRRMADCRRGQAAAGESXXXXXXXXXXXDMGCQSPPPPKGNSDGGLGSARQATENERCREHPAVGTGREGEPRAAAGKEEEVV-RKVERVNALEQEAHGGDVVLFRCRGMLSRLQRWVLRTQWDHVGVVVSGGPSGRLDLLESTHGGVHRYPLVERVRAYHDQGFASRVAFRRLRCPRPAESRARLEEFSRQVEGKTYGIVLPFTPSGPKGDRSRTKXXXXXXSSPAFQPTMPSESTDCGGG-----------EHGDVARGGRAGLESRRGQGPAFAVAKEXXXXXXXXXXXXXXXXANAAGSGEGQRGSATADAIGETTTLPSFSSGKSEKTPLSASYLCSQLVGAALSEMGVLRGGGK----DLGWLWVVPGAFGQGGAVDSRLAAGVALGEEI 556
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z3J4_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 7.600e-12
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 1 
Query: 1768 GDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGG---------PSGRLELLESTHGGVHLYPLVERVRAYHDQGFASRVAFRRLRCPRPAESRAR-LEEFSRQVEGKNYGV 2070
            GD+VLFR +G L  +QR VL +++DHVGVVVS           PS  L +LEST+ GV  YPL  R+RA+H  G    +A R+L C +     A+ L+EF+   EGK YG+
Sbjct:  181 GDLVLFRTQGTLPAIQRTVLSSEFDHVGVVVSKQMSTFSKQFHPSAGLYILESTNEGVQSYPLRTRLRAWHLSGAV--MALRQLECKKTKLEVAKILQEFTADSEGKGYGL 289
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: PX (domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CCB0_SAPPC)

HSP 1 Score: 78.6 bits (192), Expect = 3.150e-11
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = 1 
Query: 1717 VVRKVEGVNALEQAAHGGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSG-RLELLESTHGGVHLYPLVERVRAYHDQGFASRVAFRRLRCPRP---AESRARLEEFSRQVEGKNYGVVL 2076
            + R V  +  L +    GD+VLFR +  +SG+QR V   +WDHVG+VV    S  RL LLE+T  GV ++PLV R+ AY    F + +A R+L  P     A+  + L  F+ QVEGK Y + +
Sbjct:  456 IPRDVVHLRILHRFVSVGDLVLFRSKNPMSGVQRSVTGAEWDHVGIVVDAPTSRHRLMLLEATGDGVTIFPLVPRILAY-TSCFTTYMALRKLSLPPTMDLADVGSELAAFANQVEGKPYVMTI 578
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: Ribonuclease (H2 subunit A n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YUC2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.810e-10
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1 
Query: 1717 VVRKVEGVNALEQAAHGGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGVHLYPLVERVRAYHDQGFASRVAFRRLRCPRPAESRA----RLEEFSRQVEGKNYGVVL 2076
            V R V  V  L +    GD++LFR +  +SG+QR +   +WDHVG+V++     +  LLE+T  GV ++PLV R+ AY    F + +A R+L+ P PA  R     +L  F+ QV+GK Y + L
Sbjct:  450 VPRDVVHVRILHRFVSVGDILLFRSKNSMSGVQRSMTGAEWDHVGMVIA--LQNKWMLLEATGDGVTIFPLVPRILAY-TSCFTNYIALRKLQLP-PAVDRDEFTDKLAAFASQVDGKPYVMTL 569
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: PX (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1I1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1 
Query: 1768 GDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGVHLYPLVE---RVRAYHDQGFASRVAFRRLRCPRPAESRAR---LEEFSRQVEGKNYGVVL 2076
            GD+VLFRC G +SG+QR +  ++WDHVGVVV G       LLE+T  GV  +PLV    R+ AY        VA R+L  P    S AR   L  F+ +VEG  YG+ +
Sbjct:  342 GDLVLFRCCGPVSGIQRSMTGSEWDHVGVVVPGHSPTSFYLLEATGEGVSAFPLVSATSRLIAY-SAFHVKYVALRKLHTPLITLS-ARFDLLRRFAFEVEGNPYGLSV 448
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U474_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 2.890e-8
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1 
Query: 1768 GDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGG---------PSGRLELLESTHGGVHLYPLVERVRAYHDQG 1962
            GD+VLFR +G L  +QR VL +++DHVGVVVS           PS  + +LEST+ GV  YPL  R+RA+H  G
Sbjct:   66 GDLVLFRTQGTLPAIQRTVLSSEFDHVGVVVSKQMSTFSKQFHPSAGMYILESTNEGVQSYPLRTRLRAWHLSG 139
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQR3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.720e-8
Identity = 74/299 (24.75%), Postives = 121/299 (40.47%), Query Frame = 1 
Query: 1018 VMPSGRVPLPPLCCGVCGSSWETDPFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAALSNGGRARGGEGERIPEHRRVLHFLLPKPPTRTFGMLRLFPEKMERLRREQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMSPPKPRRRGGRGVGKSPTLRAVAPYSTASEPPTXXXXXXXXRGTTGRRMADCQRGQAXXXXXXXXXXXXXXDVEGEPRAATDKEEEVVVRKVEGVNALEQAAHGGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGV 1914
            ++P  ++PL  L   +  +    D F + Y AY + V  +A+  W + +R+++F ALH  L+               +RR L  L   PP +   M++   E +E  RR++L+RYLQ LLS+PE  A+  ++S++G++S++RH+                                                 R  D                                      RK+  V  L++    GDV+LF C  +LSGLQR V +++WDH+ +V     S    L+E+T  GV
Sbjct:   24 LLPKDKMPL--LKSRISHTREARDSFNKPYTAYCVTVRFDATQ-WSMWRRYNDFKALHDKLA----------AEPSVNRRALPRL---PPPK--HMVKRTAEFVEH-RRQKLDRYLQGLLSVPEVAASVPLMSWMGVLSTARHE-------------------------------------------------RSDDA-------------------------------------RKLLHVTRLQEFVQPGDVLLFACNNVLSGLQRTVTRSEWDHIAIVCKQHGSV-FSLVEATGEGV 216
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: PX (domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6P6_SAPDV)

HSP 1 Score: 66.2 bits (160), Expect = 2.140e-7
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1 
Query: 1717 VVRKVEGVNALEQAAHGGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSG-RLELLESTHGGVHLYPLVERVRAYHDQGFASRVAFRRLRCP 2001
            + R V  +  L +    GD+VLFR +  +SG+QR V   +WDHVG+VV    S  RL LLE+T  GV ++PLV R+ AY    F   +A R+L  P
Sbjct:  456 IPRDVVHLRILHRFVAVGDLVLFRSKNSMSGVQRSVTGAEWDHVGIVVEVPHSRHRLMLLEATGDGVTIFPLVPRILAY-TSCFTKYMALRKLSLP 550
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Match: Uncharacterized (protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3HC99_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 1.980e-6
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query: 1765 GGDVVLFRCRGMLSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGVHLYPLVERVRAY 1950
            GGD++LF  R  +SG+QR + +++WDHV +VV    +  L+LLE+T  GV L PL  R+ AY
Sbjct:   20 GGDLILFNSRAKVSGIQRSMTRSEWDHVAIVVPSRDNSNLQLLEATGDGVTLTPLTARLLAY 81
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9737.17733.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
PX0.000e+066.32domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PX3.160e-24069.62domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical7.600e-1245.05protein n=1 Tax=Lotharella globosa TaxID=91324 Rep... [more]
PX3.150e-1140.32domain-containing protein n=1 Tax=Saprolegnia para... [more]
Ribonuclease3.810e-1038.71H2 subunit A n=1 Tax=Achlya hypogyna TaxID=1202772... [more]
PX1.300e-844.04domain-containing protein n=1 Tax=Pythium brassicu... [more]
Hypothetical2.890e-848.65protein (Fragment) n=1 Tax=Lotharella oceanica Tax... [more]
Hypothetical6.720e-824.75protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
PX2.140e-742.71domain-containing protein n=1 Tax=Saprolegnia dicl... [more]
Uncharacterized1.980e-646.77protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9737contigE_fasciculatus_S2_contig9737:592..5491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.8
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog157072.XP_008861714.1
Preferred nameNISCH
Model size2646
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003013,GO:0003674,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006810,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0009987,GO:0010646,GO:0012505,GO:0015844,GO:0015850,GO:0015874,GO:0016020,GO:0016043,GO:0016601,GO:0019318,GO:0023051,GO:0023052,GO:0030029,GO:0030036,GO:0030334,GO:0030336,GO:0031410,GO:0031982,GO:0032228,GO:0032501,GO:0032879,GO:0032940,GO:0035556,GO:0040012,GO:0040013,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046903,GO:0048243,GO:0048519,GO:0048523,GO:0050432,GO:0050789,GO:0050794,GO:0050804,GO:0050839,GO:0050896,GO:0051179,GO:0051234,GO:0051270,GO:0051271,GO:0051716,GO:0051937,GO:0055037,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0099177,GO:2000145,GO:2000146
Exons6
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-10_005410.6
Cds size2646
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9737.17733.1prot_E_fasciculatus_S2_contig9737.17733.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9737 592..5491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.8909798-CDS-E_fasciculatus_S2_contig9737:591..11791696842617.8909798-CDS-E_fasciculatus_S2_contig9737:591..1179Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9737 592..1179 -
1696842617.9066274-CDS-E_fasciculatus_S2_contig9737:1379..15831696842617.9066274-CDS-E_fasciculatus_S2_contig9737:1379..1583Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9737 1380..1583 -
1696842617.9211423-CDS-E_fasciculatus_S2_contig9737:2206..23851696842617.9211423-CDS-E_fasciculatus_S2_contig9737:2206..2385Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9737 2207..2385 -
1696842617.946591-CDS-E_fasciculatus_S2_contig9737:2586..28191696842617.946591-CDS-E_fasciculatus_S2_contig9737:2586..2819Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9737 2587..2819 -
1696842617.9589097-CDS-E_fasciculatus_S2_contig9737:3454..36251696842617.9589097-CDS-E_fasciculatus_S2_contig9737:3454..3625Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9737 3455..3625 -
1696842617.9701726-CDS-E_fasciculatus_S2_contig9737:4220..54911696842617.9701726-CDS-E_fasciculatus_S2_contig9737:4220..5491Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9737 4221..5491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9737.17733.1

>prot_E_fasciculatus_S2_contig9737.17733.1 ID=prot_E_fasciculatus_S2_contig9737.17733.1|Name=mRNA_E_fasciculatus_S2_contig9737.17733.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=882bp
GTIRGKSLHGQPRVVTGRFPVEASSDEDGAELNRRHVSNSSPHELLVGEN
EATAGSGTVAVNVLGNVLLGTTATAVAYDARLRLCSDVLHFRGKGLRPGA
FLFLAVPDAAGGDTSRDGRIKGSLSGSTSSGSTSNNSNSGSGSGGCAKGL
DADDLSVAAETTRGSRGTGVGVGPNADDAPGRAGTGVEARETAKKAAGRS
GDGDGGSRQHAQAAGVGEEEEDSQRRTSRLPSPTRRTGSVERGLAGRDDA
EGGGGELWVTDESAPLLQALSSQWAAWAAPPADDAESSAAANTRRSAHTA
AALTPHGAVGGTSTTALEGLRNDHSASIDPALPATVTLRVMPSGRVPLPP
LCCGVCGSSWETDPFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAAL
SNGGRARGGEGERIPEHRRVLHFLLPKPPTRTFGMLRLFPEKMERLRREQ
LERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMSPPKPRRRGGRGVGK
SPTLRAVAPYSTASEPPTTSSDRRTTRGTTGRRMADCQRGQAAASESGAA
AAAAAADVEGEPRAATDKEEEVVVRKVEGVNALEQAAHGGDVVLFRCRGM
LSGLQRWVLKTQWDHVGVVVSGGPSGRLELLESTHGGVHLYPLVERVRAY
HDQGFASRVAFRRLRCPRPAESRARLEEFSRQVEGKNYGVVLPFTPSGPK
GDRSRPKHAPPPPSSPAAQPTMPIESTDSGGGGGGGGGGGGGDKHGDGTQ
GGRVALEGMRGKRPAFTVPKEEEEEEMVVLANAADRGQGLRESATPNALG
ETTTLPSFSSAKSETTALSPSYLCSQLVGAALSQMGVLRGGGGGGGGDLG
WLWVVPGAFGQGGAVDSRLAAGVALGEEVRGD
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mRNA from alignment at E_fasciculatus_S2_contig9737:592..5491-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9737.17733.1 ID=mRNA_E_fasciculatus_S2_contig9737.17733.1|Name=mRNA_E_fasciculatus_S2_contig9737.17733.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4900bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9737:592..5491- (Ectocarpus fasciculatus EfasUO2)
GGTACCATTCGTGGCAAAAGCCTCCACGGTCAACCGCGTGTCGTGACCGG
CCGGTTCCCGGTAGAAGCGAGTTCGGATGAGGATGGAGCCGAGTTGAACC
GTAGGCATGTTTCGAATTCATCGCCCCACGAGCTCCTTGTGGGAGAGAAC
GAAGCGACGGCAGGGTCGGGGACCGTTGCTGTGAACGTTCTTGGGAACGT
TCTTCTCGGGACGACCGCTACCGCCGTGGCGTACGACGCCCGGCTCCGGT
TGTGCAGCGACGTGCTGCACTTTCGCGGGAAAGGGCTTCGTCCCGGTGCC
TTCTTGTTCCTCGCTGTGCCAGACGCCGCGGGGGGCGACACAAGTCGTGA
TGGTAGAATTAAAGGTAGTCTCAGCGGCAGCACCAGCAGCGGTAGCACCA
GCAATAATAGTAATAGTGGCAGCGGCAGTGGTGGATGTGCGAAGGGTTTA
GATGCCGATGACTTGTCCGTGGCAGCGGAAACGACAAGAGGTAGCCGTGG
GACTGGCGTGGGAGTTGGTCCCAACGCCGACGATGCCCCCGGAAGGGCGG
GGACGGGGGTGGAGGCGAGGGAAACGGCGAAGAAGGCGGCCGGTAGAAGC
GGTGATGGCGACGGCGGTAGCCGGCAACACGCACAAGCCGCTGGGGTGGG
CGAAGAAGAAGAAGACAGCCAAAGAAGGACAAGCCGATTGCCGTCGCCAA
CTCGTCGTACTGGCAGCGTGGAACGTGGTCTGGCTGGTCGCGACGATGCT
GAAGGTGGTGGCGGCGAGCTCTGGGTGACGGATGAATCGGCGCCCCTCCT
GCAGGCCCTGAGTAGCCAATGGGCGGCGTGGGCTGCTCCTCCCGCTGATG
ATGCGGAGAGCTCTGCTGCCGCCAACACACGACGTTCTGCACATACAGCC
GCCGCCTTGACACCACACGGGGCGGTCGGAGGAACGTCGACGACAGCATT
GGAGGGGCTCCGCAATGATCACTCCGCCTCGATAGATCCTGCTCTCCCAG
CTACCGTGACCCTGCGGGTGATGCCTTCCGGCCGCGTGCCTCTGCCCCCC
CTCTGTTGCGGGGTGTGCGGGTCTAGCTGGGAGACGGACCCGTTCGGCAG
GGGCTACAGGGCTTACCATCTTGCGGTCGCCAACAACGCTTCCTTGGTGT
GGTACCTGCAGAAACGGTTCTCCGAGTTCGTGGCTCTGCATGCGGCCTTG
TCCAACGGCGGGAGGGCGCGCGGAGGAGAAGGGGAGAGGATTCCGGAGCA
CAGGCGGGTTTTGCATTTTTTGTAGGATCGGCATTTTTTTGGGAGGAGGG
CGTAGAAATAATGAGATCTCTGTCCGACTGAGTATGAAAGCACCCCTTTT
TGCATTGCTATTTCACGACGGTTCATGTGGACTTTTCGTGTGTGTATTCG
TCCCATCTATTCTAGGCGCCAGTCTATACCACATCTTCGGGTATTACTTG
ACGGTTACACAGGTATGAAGGAAAACACGGGATTCTTTGTTTTTATCTCC
GCCTTTCATCCTGCGGCACTCTTTTCTTACATTTAGAAGGCGACAAATCG
TACGCTTTCGACCAATTAACAACCGCCGTTGTGGTGGGTGGTTCGCAAAA
CTAGTTGTGCCTGTGTTGCATGTCGCTCCTCCAATCGCTCCATCTACGTG
CGTTATTTTCTTGCCGAGAGGGCTCCGTGGGCACAAGCTGTGGCTTGTTG
GTTTGCTTTGCCGCGGATCAATCGCCTCTTGTTTTTGGAGCGTTTTCCCC
CCACCCAGCACATGAAGCTCCTGATAAACTTCACCCCAGGATGTGAAGCC
TGTGCTGTGATAGTCACTGGCTGGTGGTGCTACGGTCAACGATTGCGGCA
TCATTTGTTTTCGCAGGTTGCCCAAGCCTCCGACGCGCACGTTCGGGATG
CTGAGACTGTTCCCTGAAAAGATGGAGCGGCTTCGGCGAGAGCAGCTGGA
AAGATACCTGCAGGAGCTCCTGTCGATTCCCGAGGCGTTGGCCAACCGCG
CGGTGCTTTCTTTTTTGGGCCTGGTGTCTTCATCAAGGTGAAATGTCTAC
TTAGCTCATGGTTTTGTTTTGTCTTCGCATTATAAAAGAGGTCCAATCTC
CGCTCAGTACCTTCTGACATCCATCACGGTCCAACTAATAACGCGGATAC
CTCCGCGGCAACGGACCAGCTACCCACACAGGAAATCTACGCAAAATAAG
AAAAACGACGCAAATTATGTAGAACCCAGAAAATCATATATATACTGATT
GTGTTTGAAGCGGTTGCACCCGACCTCTTAAATTGGACGGGCCGCGAAGG
GATGATCACCCATTTCGGGGAAAAAGAACCACCAGGTGAAGCTTGGCCTT
CCTTACCGACCGTGGAAACGTTAGCGATGTTTATCGGCCTGCTTCGCTGC
GGGCGTCTTGGGGGTGACGTTGCGGTCCCGTGCACAACCCAGAAGTACTC
TATTTTTTTGTGTTGTTAATGAACACAAGGAATCCACCTCTATCGAGAGA
CAAGGAAGCCGGGATAAAATAAGCAAAGAATATGAATCCGTAGCGTTAGC
GGCTGTATTGTTCGTCTTGAACTCTCCGCTGGCTTCACACAGCCTTCTTC
CCGTGGCCGACCGGGCTCGGCCACCCTTCCCCTCGCACGCCTCGGCGTAC
TTTACGTGCCCCGCGCCTGCAGGCACGACCTCATGTCCCCGCCGAAACCC
CGAAGGCGCGGAGGACGGGGAGTGGGAAAGTCACCCACGCTCCGCGCGGT
CGCACCGTACTCAACCGCCTCGGAGCCACCAACCACGTCAAGCGACCGCC
GCACTACGCGTGGCACCACCGGCCGTAGGATGGCAGACTGTCAAAGGGGT
CAGGCGGCTGCCAGCGAAAGCGGAGCCGCTGCTGCTGCTGCGGCGGCGGA
CGTGGGTGAGTGCGATGGCGGTGCCACAATGGAGCAGGGGGAAGCGGCGG
AGGGGGAAGCAACACACTTCTTGCCGCCGGCGCACGAGACAGCGTGCCAG
TCAACGCCACCGCCGAACGATAACCGCGACGATGGCCTCGGTGGCGCGCG
CCAAGCAAATGAGAACGAGCGATGCCGTGAGCACCCGACGGTAGGCAGGG
GGAGAGAAGGAGAGCCACGGGCAGCAACGGACAAGGAAGAGGAAGTGGTG
GTGCGGAAGGTGGAGGGGGTTAACGCGCTCGAGCAGGCGGCGCACGGCGG
GGACGTGGTCTTGTTTCGGTGCCGGGGGATGCTCAGCGGGCTGCAGCGCT
GGGTTCTGAAGACGCAGTGGGACCACGTGGGAGTGGTGGGTAGTCGGTAG
TCGGTCGCGTTGCGCGTTGATCGCGTGTGATTTTCATGTGTGCGTTGTCG
CCATCTTCGTGATATGGTGCGACAGTGAGATAGCAGTTTGGGTATGTCGT
TCCCACTCCTCTCGTCGGTGTCGTGCCGCCGCCTTTTTTTGCATGGTCGT
GTCCGTCATCGTTGATGGTGAAGCAAGTGTAAGCACTTGTTTCCCGGCAC
GGTCAGCACGCATCACTTCTTGCCCCGTCATCAACGCCCCTCCTGTACAG
GATAAACCTCACCCTTGATCCACTCTTGACGAGAAGTGCGAGCCATATTT
GTCTTACGGAGTAGTTTTTTTTGCCAACTCTAGCTGCACGGCCTGTCGAT
ACTCTGCTTTGTAGAGTCCTTCACGACAAGCACCTCCCAGGGTGCCTCTC
TTCCCCTTACGTAACCGCATTTTCCAGTGCAGCCCACTTACATTGAGCCT
ATTTATCACAGTTATTTTTGCCATAAACTAGCTGCACGGCAGCCGGTTTT
CTGCTTGGTGGCTGTTTAGAGTCCTTGACAACAAACAGGTGTCTCTCTTC
CCCTTACGTGACCACATTTTCCAGCGCAGCCCACTTACATTATGTCAAAC
TTCCGCAGGTAGTTTCTGGAGGGCCGAGTGGGCGATTGGAGCTCCTAGAG
TCCACCCACGGGGGGGTTCACCTCTATCCCCTGGTGGAGCGCGTGAGGGC
GTACCACGACCAGGGGTTCGCCAGCAGAGTTGCGTTTCGGAGGCTGCGGT
GTCCCCGCCCCGCCGAGTCGAGGGCGCGGCTCGAAGAGTTTTCGCGGCAG
GTGGAAGGAAAGGTGGGCGCAGCGCCGGAGAACCCCTTCGCCCACATTGT
GCAGGAACAAATGGTGTATGTTTGAGGTCTGCACACGTGAAAGGTGTGTG
TGGGAGTCTGCAATTATCGGTTGGATCACTTCGATTGCCCGGCTGTTATG
TTTTGTTTTGTTTACCCCCGATCTTCGCTGCTGTGTGTGACGACCCGACC
GACTCTCTCAAGAACTACGGCGTCGTCCTCCCTTTCACCCCGAGCGGACC
TAAGGGGGACCGTTCTCGGCCGAAGCACGCGCCTCCTCCGCCTAGCTCGC
CGGCAGCGCAGCCAACGATGCCTATTGAGAGCACTGACAGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACAAACACGGTGATGGAAC
CCAAGGCGGCCGGGTGGCGTTAGAAGGCATGCGGGGGAAGCGTCCTGCCT
TCACCGTTCCAAAGGAGGAGGAGGAGGAGGAGATGGTCGTGCTTGCAAAC
GCGGCGGACCGTGGACAGGGGCTTAGAGAGAGTGCTACCCCCAACGCCTT
AGGGGAAACGACCACGTTGCCGAGTTTCTCTTCGGCCAAGAGCGAGACGA
CGGCGCTCAGCCCTTCCTACCTTTGCTCACAGCTGGTGGGGGCAGCCCTC
TCGCAAATGGGAGTTTTGAGAGGAGGAGGAGGAGGGGGAGGGGGGGATCT
GGGATGGCTGTGGGTGGTCCCCGGTGCGTTCGGGCAGGGAGGTGCCGTGG
ATTCGCGGTTGGCGGCTGGTGTGGCGTTAGGGGAAGAGGTGAGGGGCGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9737:592..5491-

>mRNA_E_fasciculatus_S2_contig9737.17733.1 ID=mRNA_E_fasciculatus_S2_contig9737.17733.1|Name=mRNA_E_fasciculatus_S2_contig9737.17733.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2646bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9737:592..5491- (Ectocarpus fasciculatus EfasUO2)
GGTACCATTCGTGGCAAAAGCCTCCACGGTCAACCGCGTGTCGTGACCGG
CCGGTTCCCGGTAGAAGCGAGTTCGGATGAGGATGGAGCCGAGTTGAACC
GTAGGCATGTTTCGAATTCATCGCCCCACGAGCTCCTTGTGGGAGAGAAC
GAAGCGACGGCAGGGTCGGGGACCGTTGCTGTGAACGTTCTTGGGAACGT
TCTTCTCGGGACGACCGCTACCGCCGTGGCGTACGACGCCCGGCTCCGGT
TGTGCAGCGACGTGCTGCACTTTCGCGGGAAAGGGCTTCGTCCCGGTGCC
TTCTTGTTCCTCGCTGTGCCAGACGCCGCGGGGGGCGACACAAGTCGTGA
TGGTAGAATTAAAGGTAGTCTCAGCGGCAGCACCAGCAGCGGTAGCACCA
GCAATAATAGTAATAGTGGCAGCGGCAGTGGTGGATGTGCGAAGGGTTTA
GATGCCGATGACTTGTCCGTGGCAGCGGAAACGACAAGAGGTAGCCGTGG
GACTGGCGTGGGAGTTGGTCCCAACGCCGACGATGCCCCCGGAAGGGCGG
GGACGGGGGTGGAGGCGAGGGAAACGGCGAAGAAGGCGGCCGGTAGAAGC
GGTGATGGCGACGGCGGTAGCCGGCAACACGCACAAGCCGCTGGGGTGGG
CGAAGAAGAAGAAGACAGCCAAAGAAGGACAAGCCGATTGCCGTCGCCAA
CTCGTCGTACTGGCAGCGTGGAACGTGGTCTGGCTGGTCGCGACGATGCT
GAAGGTGGTGGCGGCGAGCTCTGGGTGACGGATGAATCGGCGCCCCTCCT
GCAGGCCCTGAGTAGCCAATGGGCGGCGTGGGCTGCTCCTCCCGCTGATG
ATGCGGAGAGCTCTGCTGCCGCCAACACACGACGTTCTGCACATACAGCC
GCCGCCTTGACACCACACGGGGCGGTCGGAGGAACGTCGACGACAGCATT
GGAGGGGCTCCGCAATGATCACTCCGCCTCGATAGATCCTGCTCTCCCAG
CTACCGTGACCCTGCGGGTGATGCCTTCCGGCCGCGTGCCTCTGCCCCCC
CTCTGTTGCGGGGTGTGCGGGTCTAGCTGGGAGACGGACCCGTTCGGCAG
GGGCTACAGGGCTTACCATCTTGCGGTCGCCAACAACGCTTCCTTGGTGT
GGTACCTGCAGAAACGGTTCTCCGAGTTCGTGGCTCTGCATGCGGCCTTG
TCCAACGGCGGGAGGGCGCGCGGAGGAGAAGGGGAGAGGATTCCGGAGCA
CAGGCGGGTTTTGCATTTTTTGTTGCCCAAGCCTCCGACGCGCACGTTCG
GGATGCTGAGACTGTTCCCTGAAAAGATGGAGCGGCTTCGGCGAGAGCAG
CTGGAAAGATACCTGCAGGAGCTCCTGTCGATTCCCGAGGCGTTGGCCAA
CCGCGCGGTGCTTTCTTTTTTGGGCCTGGTGTCTTCATCAAGGCACGACC
TCATGTCCCCGCCGAAACCCCGAAGGCGCGGAGGACGGGGAGTGGGAAAG
TCACCCACGCTCCGCGCGGTCGCACCGTACTCAACCGCCTCGGAGCCACC
AACCACGTCAAGCGACCGCCGCACTACGCGTGGCACCACCGGCCGTAGGA
TGGCAGACTGTCAAAGGGGTCAGGCGGCTGCCAGCGAAAGCGGAGCCGCT
GCTGCTGCTGCGGCGGCGGACGTGGAAGGAGAGCCACGGGCAGCAACGGA
CAAGGAAGAGGAAGTGGTGGTGCGGAAGGTGGAGGGGGTTAACGCGCTCG
AGCAGGCGGCGCACGGCGGGGACGTGGTCTTGTTTCGGTGCCGGGGGATG
CTCAGCGGGCTGCAGCGCTGGGTTCTGAAGACGCAGTGGGACCACGTGGG
AGTGGTAGTTTCTGGAGGGCCGAGTGGGCGATTGGAGCTCCTAGAGTCCA
CCCACGGGGGGGTTCACCTCTATCCCCTGGTGGAGCGCGTGAGGGCGTAC
CACGACCAGGGGTTCGCCAGCAGAGTTGCGTTTCGGAGGCTGCGGTGTCC
CCGCCCCGCCGAGTCGAGGGCGCGGCTCGAAGAGTTTTCGCGGCAGGTGG
AAGGAAAGAACTACGGCGTCGTCCTCCCTTTCACCCCGAGCGGACCTAAG
GGGGACCGTTCTCGGCCGAAGCACGCGCCTCCTCCGCCTAGCTCGCCGGC
AGCGCAGCCAACGATGCCTATTGAGAGCACTGACAGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGACAAACACGGTGATGGAACCCAA
GGCGGCCGGGTGGCGTTAGAAGGCATGCGGGGGAAGCGTCCTGCCTTCAC
CGTTCCAAAGGAGGAGGAGGAGGAGGAGATGGTCGTGCTTGCAAACGCGG
CGGACCGTGGACAGGGGCTTAGAGAGAGTGCTACCCCCAACGCCTTAGGG
GAAACGACCACGTTGCCGAGTTTCTCTTCGGCCAAGAGCGAGACGACGGC
GCTCAGCCCTTCCTACCTTTGCTCACAGCTGGTGGGGGCAGCCCTCTCGC
AAATGGGAGTTTTGAGAGGAGGAGGAGGAGGGGGAGGGGGGGATCTGGGA
TGGCTGTGGGTGGTCCCCGGTGCGTTCGGGCAGGGAGGTGCCGTGGATTC
GCGGTTGGCGGCTGGTGTGGCGTTAGGGGAAGAGGTGAGGGGCGAC
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