mRNA_E_fasciculatus_S2_contig9732.17731.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9732.17731.1
Unique NamemRNA_E_fasciculatus_S2_contig9732.17731.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9732.17731.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.400e-52
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 1 
Query:    1 EVLKLFESEQTERAKEAIVKTQQALKSEQAKALKYELQTGVPNPLLGDIEDNQPDSPISADAEIGSGRPGNRAAANAGEDRXXXXXXXXX-FGGKKPMTQLELRAENDRRRTIGMPL 348
            EVLKLFESEQTERAKEAIVKTQQALKSEQAKALKYELQTG+PNPLLGDIED+QP SPISADAEIGSGRPGNRAAANAGEDRXXXXXXXXX FGGKKPMTQLELRAENDRRRT+GMPL
Sbjct: 1494 EVLKLFESEQTERAKEAIVKTQQALKSEQAKALKYELQTGIPNPLLGDIEDDQPVSPISADAEIGSGRPGNRAAANAGEDRXXXXXXXXXXFGGKKPMTQLELRAENDRRRTLGMPL 1610
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BLAST of mRNA_E_fasciculatus_S2_contig9732.17731.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.630e-49
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 EVLKLFESEQTERAKEAIVKTQQALKSEQAKALKYELQTGVPNPLLGDIEDNQPDSPISADAEIGSGRPGNRAAANAGEDRXXXXXXXXXFGGKKPMTQLELRAENDRRRTIGMPL 348
            EVLKLFESEQTERAKEAIVKTQQALKSEQA ALKYELQTG+PNPLLGDIED+ P SPISADAEIGSGRPGNRAAANA EDR         FGGKKPMTQLELRAENDRRRT+GMPL
Sbjct: 1904 EVLKLFESEQTERAKEAIVKTQQALKSEQATALKYELQTGIPNPLLGDIEDDLPVSPISADAEIGSGRPGNRAAANAVEDRRGDGGWCC-FGGKKPMTQLELRAENDRRRTLGMPL 2018
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9732.17731.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.400e-5295.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.630e-4986.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9732contigE_fasciculatus_S2_contig9732:133..1688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score189.5
Seed ortholog evalue8.8e-46
Seed eggNOG ortholog2880.D8LF91
Model size350
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
Ec32 ortholog descriptionFerIin domain
Ec32 orthologEc-01_004080.1
Cds size348
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.6417897-CDS-E_fasciculatus_S2_contig9732:134..3951696842617.6417897-CDS-E_fasciculatus_S2_contig9732:134..395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9732 135..395 -
1696842617.6562722-CDS-E_fasciculatus_S2_contig9732:1601..16881696842617.6562722-CDS-E_fasciculatus_S2_contig9732:1601..1688Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9732 1602..1688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9732.17731.1prot_E_fasciculatus_S2_contig9732.17731.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9732 135..1688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9732.17731.1

>prot_E_fasciculatus_S2_contig9732.17731.1 ID=prot_E_fasciculatus_S2_contig9732.17731.1|Name=mRNA_E_fasciculatus_S2_contig9732.17731.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=116bp
EVLKLFESEQTERAKEAIVKTQQALKSEQAKALKYELQTGVPNPLLGDIE
DNQPDSPISADAEIGSGRPGNRAAANAGEDRRGGGGGWCCFGGKKPMTQL
ELRAENDRRRTIGMPL
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mRNA from alignment at E_fasciculatus_S2_contig9732:133..1688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9732.17731.1 ID=mRNA_E_fasciculatus_S2_contig9732.17731.1|Name=mRNA_E_fasciculatus_S2_contig9732.17731.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1556bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9732:133..1688- (Ectocarpus fasciculatus EfasUO2)
GAGGTGCTGAAGCTGTTCGAGAGCGAGCAGACGGAGAGGGCCAAGGAAGC
CATCGTCAAGACACAGCAGGCGCTCAAGTCGGAGCAGGTGTGTTACGTTA
TGTGTTATGTGTTTGTTGTTGCGAGGCGTGCATGCTTCTTCGCAAGAGGT
CGTGCTTAGGCTGTTTCCCTTCGTTGTGTTGAGCATTTTTTTTATCGTGA
CACCGGCGGCATACACAACAATCAAAGGCGTTTTATATTGTAGTGACACC
TGGGGTATTCACCCCCCTTTCGAAGCCAGGCGTCGTAATGACACCTAGGC
CATACACCCTCTTCCCAAGTAAAGCATTGTAGTGATAGCTGGGGCGTACC
ACCCCCCTACCCCCTTTCCCAAGCAAGGCATTGCAGTGATAGCTGCGGCA
TACCACCCCTTCCCCCTTTCCCAAGCAAGGCGTTGAAGTGACGGCTGCGG
CATACAATCCCCTTTTCCAAACAAGGCGTTGAAATCTGTTCTTTTCTGTG
GCTGTTGCTGTTGCCGAAGTCCCGCTCGACATTCCACAGCGGTAGGCGAT
TTGTTAGCATCCCAAGCTGTTTTGCCGAAAGCTAACGAGACAGGGAATAC
GCCAAACACGTTCTCATCATGAGAAAAAGCTTGCAATGCTTTGCTGGCAG
TACGATATCTTCGTGAGACGAAGCGGATGCGCATCCACTAACCTTGCAGT
CTCTGTGGTTGTTGTCGTATCGCACTCGACATTCCACGGCGGTAGGCGAC
GGTTGTTCCAGTAGCATCTCAAGTTTTTTTTTTTTTCCAAATGCTAACGA
AACACGGGGTCACCAAGTACCTTCATACCTTCATGACAAGAGGAGCGTCT
GCCAAGTTGAGACTGGGGGTGGAACCGTCGACAATACACTCGTTTTTTTG
CGTGCTTGGGCAATCCATCGGAAAGTGTTGGAAATAAAACTGGAGGACTT
TCGAAGCCGGTTTTCGGTTTTCTGTGTGACCGGAGATCCCTGCAGAAGGT
TGTAGTCTGCTGAAAGAATCTTTGACCTTGCGACTTCTAGGGACGTGCTG
CCTTGGTTTTCCTTCACCCGATTGGATTGTTTGTGTCGCTTACCTTACCT
TACCTCCGTCGGTCGTGGTCGTCCATGCTATTTATTATAGTCTATTACCC
CCCTCCATCGCACGACAACAACCCCCTATGATTTGGATAGTCTGTCTGTT
CTCTCTGCGCATGTCGGACCCAGGTACCATCGTCTTTTTGTACCTCTCGT
CACTCACGCCCATCCCGTCCCTCCCCTGCCACCCCCCGACAAGGCGAAAG
CCCTTAAGTACGAGCTCCAAACCGGAGTCCCCAACCCGCTGCTGGGTGAC
ATCGAGGACAATCAACCCGACTCTCCGATATCCGCGGACGCCGAGATTGG
ATCCGGCCGGCCCGGTAACAGGGCGGCCGCAAACGCCGGGGAGGATAGGC
GTGGCGGCGGCGGCGGCTGGTGCTGTTTCGGCGGGAAGAAGCCGATGACT
CAGCTCGAGCTTCGGGCGGAGAACGACCGTCGACGGACTATAGGGATGCC
GCTCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9732:133..1688-

>mRNA_E_fasciculatus_S2_contig9732.17731.1 ID=mRNA_E_fasciculatus_S2_contig9732.17731.1|Name=mRNA_E_fasciculatus_S2_contig9732.17731.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=348bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9732:133..1688- (Ectocarpus fasciculatus EfasUO2)
GAGGTGCTGAAGCTGTTCGAGAGCGAGCAGACGGAGAGGGCCAAGGAAGC
CATCGTCAAGACACAGCAGGCGCTCAAGTCGGAGCAGGCGAAAGCCCTTA
AGTACGAGCTCCAAACCGGAGTCCCCAACCCGCTGCTGGGTGACATCGAG
GACAATCAACCCGACTCTCCGATATCCGCGGACGCCGAGATTGGATCCGG
CCGGCCCGGTAACAGGGCGGCCGCAAACGCCGGGGAGGATAGGCGTGGCG
GCGGCGGCGGCTGGTGCTGTTTCGGCGGGAAGAAGCCGATGACTCAGCTC
GAGCTTCGGGCGGAGAACGACCGTCGACGGACTATAGGGATGCCGCTC
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