mRNA_E_fasciculatus_S2_contig9729.17728.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9729.17728.1
Unique NamemRNA_E_fasciculatus_S2_contig9729.17728.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9729.17728.1 vs.
Match: Peptide-methionine ((S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE2_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.940e-33
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:    3 GMYSFKQATGMFKKVFGADEAPGWIDPLAGSSYEQILDRKGWGFLAEDKSEPRFVFDLIET 185
            GMYSFKQATGMFKKVFGADEAPGWIDPLAGSSYEQILDRKGWGFLAEDKSEPRF F LIET
Sbjct:  136 GMYSFKQATGMFKKVFGADEAPGWIDPLAGSSYEQILDRKGWGFLAEDKSEPRFAFGLIET 196
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9729.17728.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Peptide-methionine1.940e-3396.72(S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9729contigE_fasciculatus_S2_contig9729:2877..4462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size187
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_003070.2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.4207313-CDS-E_fasciculatus_S2_contig9729:2876..29541696842617.4207313-CDS-E_fasciculatus_S2_contig9729:2876..2954Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9729 2877..2954 -
1696842617.4345865-CDS-E_fasciculatus_S2_contig9729:3828..38911696842617.4345865-CDS-E_fasciculatus_S2_contig9729:3828..3891Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9729 3829..3891 -
1696842617.4504557-CDS-E_fasciculatus_S2_contig9729:4418..44571696842617.4504557-CDS-E_fasciculatus_S2_contig9729:4418..4457Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9729 4419..4457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.4620163-UTR-E_fasciculatus_S2_contig9729:4457..44621696842617.4620163-UTR-E_fasciculatus_S2_contig9729:4457..4462Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9729 4458..4462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9729.17728.1prot_E_fasciculatus_S2_contig9729.17728.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9729 2877..4457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9729.17728.1

>prot_E_fasciculatus_S2_contig9729.17728.1 ID=prot_E_fasciculatus_S2_contig9729.17728.1|Name=mRNA_E_fasciculatus_S2_contig9729.17728.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
MYSFKQATGMFKKVFGADEAPGWIDPLAGSSYEQILDRKGWGFLAEDKSE
PRFVFDLIET
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mRNA from alignment at E_fasciculatus_S2_contig9729:2877..4462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9729.17728.1 ID=mRNA_E_fasciculatus_S2_contig9729.17728.1|Name=mRNA_E_fasciculatus_S2_contig9729.17728.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1586bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9729:2877..4462- (Ectocarpus fasciculatus EfasUO2)
CGGGGATGTACTCGTTTAAGCAAGCAACCGGCATGTTTAAGAAGGTGATG
ATAGGTGGGGGGCGTTTTTCCTTCCGCGCTGTTTGCGGAGGTGCGGACCG
GTATGCATATGTAAACATGCAAACACGAACGACTTCCGACGCAGTCCCCA
CACTTCGTACATATGCATCGGAGGTATAATACAATACGCTGGTAGAGTAT
GTGAGTTGTGTTCGACTACATGAGTGCAGCGTGTTTTTATTGTTAGCATC
GACCTCGCTAATCGGCTGTGTGTGCGTTTGTGCTTGCGGGAAAACATAGC
CAATCACTTACTGAAAGCGTCCTACCCGCCAGAGCTCCCTTCAAGCCTGA
CACGGAAGTGTTCCCCTATCGACTAAAGTAAATCGAACGCCCGTGAATCG
AACGCCCGTGTTTGAAACACTACCTCCAGTCAGCTACGTAGGAGCGGCCA
TCAGTAGTACACCGGCAGCGTCATAACAACCGTAATTACTTCTCGTAGTG
CAGAATTTGTAGCTTTCCTCAGCGAAACTATTCCTCTGGTGCGCTGCCCT
CGCGACCTGGCCGGCTCTTAGGTTTTCGGAGCAGACGAAGCGCCGGGCTG
GATAGACCCGCTCGCCGGCTCGTCCTACGAACAGGTGTACAACAAAATAA
CAAACTTGAGCTTCCTTCGAAGAGCACACCCAGCTCCAGTGGAGGACGAC
TGAATGTTGTCTAGCTTCATATTTTTGTTTTTTCGCTATTGGGACGACTC
TGTTCCAACCTCTTGTTGCTTTCGTTGGTCTGCCATATTTGGAGCTATCA
CAAGGCTTACGTGTCGTCACGGAAATCCGTGTCTTGGCCACGAACGGCCA
CGAAGGAATACCAGCGAAGTAAAGGTAGGGTAGAGATGGAAAACAACCGT
TAACATGAAGGCAACAACAACTGGTAATTACGTTACACGTTCGACTTCTC
GGTTGAGCAGGGAATGGGACGTCTGCATCCTTCTCGCGTTCTAACACGTA
GGTGACCCCCAAAGAGCATCTTGCGCGTGGCAATCCTTCTGTGTCGCCGC
GGCTGGCAGGTCTGAACATATGGAACGCTATAGAACCGACGGCCAGAAGA
TAACAAAACACAACACAAAAACATGCAACCCATCCACACGCAACTATGTA
ACCGTTTATACTTTTTGATGGCGCTGTCTGCCATCTCAACACTGAACTTG
ACCAGCGTGTCACCGTTCTTTGTTCGCGCTCGGATGCTTGTACAGCATGG
GTCACGGAAAAAAATTTGAGCTGGCTTGATCTTGGTGTAGAATACCTCTT
AGCAGCAGCAGCAGTTGGTTGTAGCAGGAGGGCAGTATACCTCAGGATGG
AATCATGCATGCACCTGAATTTTCGAAGGGTCGCACCCACCAACTTCATC
GTCTGCGAGATAATCCGAATCCGTTATTGGGGTGCCAGACACGTACCTCC
TTCTGGTTGTGGCGAAACGCGTGTCCCCCGCCGAACTGCCTCCCGCATTA
CATGGCAGATCTTGGATAGAAAAGGCTGGGGATTCTTGGCAGAGGACAAA
TCGGAGCCGAGATTTGTGTTCGACCTGATAGAGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9729:2877..4462-

>mRNA_E_fasciculatus_S2_contig9729.17728.1 ID=mRNA_E_fasciculatus_S2_contig9729.17728.1|Name=mRNA_E_fasciculatus_S2_contig9729.17728.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9729:2877..4462- (Ectocarpus fasciculatus EfasUO2)
ATGTACTCGTTTAAGCAAGCAACCGGCATGTTTAAGAAGGTTTTCGGAGC
AGACGAAGCGCCGGGCTGGATAGACCCGCTCGCCGGCTCGTCCTACGAAC
AGATCTTGGATAGAAAAGGCTGGGGATTCTTGGCAGAGGACAAATCGGAG
CCGAGATTTGTGTTCGACCTGATAGAGACG
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