mRNA_E_fasciculatus_S2_contig9729.17727.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9729.17727.1
Unique NamemRNA_E_fasciculatus_S2_contig9729.17727.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9729.17727.1 vs.
Match: Peptide-methionine ((S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G336_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.600e-41
Identity = 71/88 (80.68%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 SCCRR-ARRLEERGCGEITPGPGFPAPCIPNTWFCINRSALAFVPMNSPLPREHRPIHRPAASALEDLGNGSGFGAVLRGGTQQYRAG 261
            SCCRR AR   ERG GE TPG GFPA CIPNTWFCINRSAL FVPM+SPLPRE+RPIHRPAASALE LG G+ FGAVLRGGTQQ  AG
Sbjct:    2 SCCRRRARWRGERGGGETTPGRGFPAQCIPNTWFCINRSALTFVPMDSPLPREYRPIHRPAASALEGLGTGTVFGAVLRGGTQQLIAG 89
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BLAST of mRNA_E_fasciculatus_S2_contig9729.17727.1 vs.
Match: Peptide-methionine ((S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.250e-18
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   97 FCINRSALAFVPMNSPLPREHRPIHRPAASALEDLGNGSGFGAVLRG 237
            FCINRSAL FVPM+SPLPRE+RPIHRPAASALE LG G+GFGAVLRG
Sbjct:  351 FCINRSALTFVPMDSPLPREYRPIHRPAASALEGLGTGTGFGAVLRG 397
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9729.17727.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Peptide-methionine1.600e-4180.68(S)-S-oxide reductase n=1 Tax=Ectocarpus siliculos... [more]
Peptide-methionine3.250e-1887.23(S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9729contigE_fasciculatus_S2_contig9729:171..1346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_003070.1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.527994-CDS-E_fasciculatus_S2_contig9729:170..3361696842617.527994-CDS-E_fasciculatus_S2_contig9729:170..336Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9729 171..336 -
1696842617.5457666-CDS-E_fasciculatus_S2_contig9729:1251..13461696842617.5457666-CDS-E_fasciculatus_S2_contig9729:1251..1346Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9729 1252..1346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9729.17727.1prot_E_fasciculatus_S2_contig9729.17727.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9729 171..1346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9729.17727.1

>prot_E_fasciculatus_S2_contig9729.17727.1 ID=prot_E_fasciculatus_S2_contig9729.17727.1|Name=mRNA_E_fasciculatus_S2_contig9729.17727.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=87bp
SCCRRARRLEERGCGEITPGPGFPAPCIPNTWFCINRSALAFVPMNSPLP
REHRPIHRPAASALEDLGNGSGFGAVLRGGTQQYRAG
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mRNA from alignment at E_fasciculatus_S2_contig9729:171..1346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9729.17727.1 ID=mRNA_E_fasciculatus_S2_contig9729.17727.1|Name=mRNA_E_fasciculatus_S2_contig9729.17727.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1176bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9729:171..1346- (Ectocarpus fasciculatus EfasUO2)
AGCTGCTGCCGGCGAGCGCGGCGATTGGAGGAAAGGGGGTGCGGCGAAAT
AACGCCTGGCCCGGGTTTCCCCGCTCCGTGCATCCCGAACACGTGGTGAG
AGCTGCTGCTGTACCGTGAATTGGTGGAACAGCGGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCGCGAATATGGTACTTCCATGCCGCGCGACCCTCTCGT
CTTCTGTGTGCTGTGTGTTGCCGAGACCACGAGGATTGTATGTGCCTGCG
GCACGAGCACGTAGAACCGCCCTGCCAAACCTACCCTTGACAAGAGGGGG
GAAACAGATGGCGCGCGCGGGAGGGGTCAGCGGTGCTCGACGCTGGGCCT
CCTTTTGTTCCTCCAGGCTGACCGTACGAGTGTCATTAGCAGTGCTTGCG
AAATCGAGAAGGGAGCCCAGTAGAATATGAATAGCTACTATTTTCTCGTT
TCACGTCTGGGTTTTTGAGACTTCGAGGTGCAACCCAGCCTGATTCGGCA
GCAACGATAAACGGCGACGCATGTACCGGTGTGCCGTCAGGTCTTGCGAG
AAGAGAACGGGCCACTGAGGCGGACGGAGGTCCTTTGCGCCAGGAGTGGG
GCTCACCTTGGCCATGTGTTCGACGATGGGCCCCCTCCCACTGGAAAAAG
GTAGACACATCACTTGTAAATGTTATCTTTCTTGGACCCTTTGGTATCGC
TAAGAGGCCTGTTCCCTCCGTTCCTCCATTCCACGTTATTTGTTTCGGCC
CTACAGGGCTTCAAGGCAGTTTTTTCACCATTTTTTACGCCTTTTTTGTT
CTTTCGTGTTGTCCATGCCTTTTGTGACTGACGGGTTCCTCGCGATGTGT
CTTCGTGATCTGTGGTTCCCTTTCGTGACTTGCGGTTCTCTTCCTGACTT
GTGGTTCTCTTCCCGCGTTGTGTTTTCTTCCCGACCTGTGGTTCTCTGCC
TGGCGTGGTTCCTCAACGTGATGTGTGGTTCTTCTTCGTGACGCGCATTG
AAAACATCAGGTTCTGCATCAACCGCTCGGCGCTGGCCTTTGTTCCGATG
AACTCCCCGCTACCGAGGGAACACCGACCAATTCACCGCCCCGCGGCCTC
GGCGTTGGAAGACCTCGGCAACGGCAGCGGCTTCGGCGCAGTCTTGAGAG
GTGGCACACAGCAGTACAGAGCAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9729:171..1346-

>mRNA_E_fasciculatus_S2_contig9729.17727.1 ID=mRNA_E_fasciculatus_S2_contig9729.17727.1|Name=mRNA_E_fasciculatus_S2_contig9729.17727.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=261bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9729:171..1346- (Ectocarpus fasciculatus EfasUO2)
AGCTGCTGCCGGCGAGCGCGGCGATTGGAGGAAAGGGGGTGCGGCGAAAT
AACGCCTGGCCCGGGTTTCCCCGCTCCGTGCATCCCGAACACGTGGTTCT
GCATCAACCGCTCGGCGCTGGCCTTTGTTCCGATGAACTCCCCGCTACCG
AGGGAACACCGACCAATTCACCGCCCCGCGGCCTCGGCGTTGGAAGACCT
CGGCAACGGCAGCGGCTTCGGCGCAGTCTTGAGAGGTGGCACACAGCAGT
ACAGAGCAGGG
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