mRNA_E_fasciculatus_S2_contig9725.17726.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9725.17726.1
Unique NamemRNA_E_fasciculatus_S2_contig9725.17726.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L355_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.880e-49
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2
Query:   29 MEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            MEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS
Sbjct:    1 MEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 82          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Putative (serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.000e-36
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 2
Query:    2 REGAQDADAMEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQR 214
            REGA DADAMEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQR
Sbjct:  263 REGALDADAMEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQR 333          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.320e-21
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   59 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            L+TAEPE L+SE+TP+DEF++LACDG+FDVL +EEV+  +  +MK H DAQR  E L+  AI +RRTRDNV+
Sbjct:   63 LVTAEPEILISELTPEDEFVLLACDGLFDVLGNEEVIDLIKTEMKQHGDAQRAVEMLSHVAIHKRRTRDNVT 134          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Phosphatase (2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.970e-20
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 2
Query:   17 DADAMEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            DAD ++      A L+ +EPEF V ++TP ++F+VLACDG+FDV ++ EVV  V  +M +H DAQ+CCE +T +AI ER TRDNV+
Sbjct:  489 DADGLDSTSGGCAPLVISEPEFTVVQLTPAEDFMVLACDGLFDVFSNVEVVQAVCAEMAVHGDAQKCCESITLRAIRERHTRDNVT 574          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.460e-19
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   59 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            LITAEPE L   ITP+DEF++LACDG+FDV TS+EVV  V +++++H D QR CE L  +AI ER T+DNVS
Sbjct: 1168 LITAEPEMLSCRITPEDEFVLLACDGLFDVFTSDEVVRIVRKELRMHGDTQRVCETLVRRAINERYTQDNVS 1239          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX31_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.200e-16
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   59 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            ++TAEPE    ++ P+DEF+VLACDG+FDV T+EEVV  V  +M  H DAQ+C E L+ +AI ER  RDNV+
Sbjct:  669 ILTAEPEIQSLKLAPEDEFIVLACDGLFDVFTNEEVVQAVRAEMAQHQDAQQCVESLSRRAIHERNCRDNVT 740          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.010e-15
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   59 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            LI A+P+   + I+  D+FL+LACDG+FDV T E++V  V   M+ H D+QRCC++LT +AI +R +RDNVS
Sbjct:  534 LIVADPDIQATNISENDQFLLLACDGLFDVFTPEDIVTFVKSNMEEHHDSQRCCQNLTYEAIRKRNSRDNVS 605          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCC2_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 2.420e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   59 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            LIT EPE L  ++TP+D F++LACDG+FDV  +EE VA V ++M  H +A R CE L+ +A+ ER +RDN++
Sbjct:  151 LITCEPEILEYDLTPEDHFILLACDGLFDVFENEEAVALVLQEMAGHRNAHRACEALSRRAL-ERGSRDNIT 221          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Protein (phosphatase 1b2 53 kDa isoform n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U755_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.210e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   50 YAQ-LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVS 274
            Y+Q L+ A PE L++E++ +D+F++LACDG+FDV  + EV+  + E MK H DAQR CE+++  AI +R   DNVS
Sbjct:  918 YSQPLVIARPEILITELSERDDFVLLACDGLFDVFPNSEVIRFILEDMKQHHDAQRACENISYTAIHQRIAHDNVS 993          
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DMW7_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 7.340e-14
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   59 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKI----HADAQRCCEDLTEKAIVERRTRDNVS 274
            L+ AEPE  V ++TPQDEFL +ACDG+FDV +S+E V  +Y ++        D +R  ED+  +AI +RR+RDNV+
Sbjct:   89 LVIAEPEIRVEQLTPQDEFLFMACDGLFDVFSSQEAVDFIYARLAAMPQNEQDPKRAVEDIVHEAIHDRRSRDNVT 164          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9725.17726.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PPM-type1.880e-49100.00phosphatase domain-containing protein n=1 Tax=Ecto... [more]
Putative1.000e-3698.59serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectoc... [more]
Hypothetical8.320e-2161.11protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Phosphatase4.970e-2051.162C-like domain-containing protein n=1 Tax=Tribonem... [more]
PPM-type8.460e-1961.11phosphatase domain-containing protein n=2 Tax=Ecto... [more]
Hypothetical4.200e-1655.56protein n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical5.010e-1551.39protein n=1 Tax=Chromulina nebulosa TaxID=96789 Re... [more]
Hypothetical2.420e-1451.39protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Protein6.210e-1448.68phosphatase 1b2 53 kDa isoform n=2 Tax=Monodopsida... [more]
Hypothetical7.340e-1447.37protein n=1 Tax=Alexandrium andersonii TaxID=32796... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9725contigE_fasciculatus_S2_contig9725:4511..5693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score122.5
Seed ortholog evalue9.3e-26
Seed eggNOG ortholog2880.D7FNP4
Model size274
KEGG koko:K01090,ko:K10706,ko:K14803
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size246
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.3525252-CDS-E_fasciculatus_S2_contig9725:4510..45711696842617.3525252-CDS-E_fasciculatus_S2_contig9725:4510..4571Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9725 4511..4571 -
1696842617.3662567-CDS-E_fasciculatus_S2_contig9725:4920..50391696842617.3662567-CDS-E_fasciculatus_S2_contig9725:4920..5039Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9725 4921..5039 -
1696842617.3764117-CDS-E_fasciculatus_S2_contig9725:5599..56651696842617.3764117-CDS-E_fasciculatus_S2_contig9725:5599..5665Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9725 5600..5665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.3874605-UTR-E_fasciculatus_S2_contig9725:5665..56931696842617.3874605-UTR-E_fasciculatus_S2_contig9725:5665..5693Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9725 5666..5693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9725.17726.1prot_E_fasciculatus_S2_contig9725.17726.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9725 4511..5665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9725.17726.1

>prot_E_fasciculatus_S2_contig9725.17726.1 ID=prot_E_fasciculatus_S2_contig9725.17726.1|Name=mRNA_E_fasciculatus_S2_contig9725.17726.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
MEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANV
YEKMKIHADAQRCCEDLTEKAIVERRTRDNVS
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mRNA from alignment at E_fasciculatus_S2_contig9725:4511..5693-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9725.17726.1 ID=mRNA_E_fasciculatus_S2_contig9725.17726.1|Name=mRNA_E_fasciculatus_S2_contig9725.17726.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9725:4511..5693- (Ectocarpus fasciculatus EfasUO2)
CAGGGAGGGAGCGCAGGATGCCGACGCGATGGAAGAGAGAGAGACTGCGT ACGCTCAACTCATCACGGCCGAGCCTGAATTCCTGGTGTCGGAGGTGCGT AGGCAGTAGACAGCAGTGTCGTCGTTGTCGTTGTCGTCGTCAACGTTCCT GTTACTGCTTCCGCCGCCGCTACTGCCGCTACTGCCGCTGCTGCTGCTGC CGCTGCCATTTCTGTTGTCGTCGTCAATGCCCTCGGACCAGAAAAAAGAA AGAACATTTTCACCTCTATCCTCCACGCAAGGCAATAGAATAGTACCGCG CCTCTGGCCACAGCAGGCTCACGTACACACACACACGAACTATTTAGCAG GCTCTGTTGCTCTGTCTCTATCTCTTTTTATATATATTTAAGTGTCTGCC CCCCCCCCCCCCCCCCCCTCCTTTGTTTTTTTTTTTTTTTTTGTTGCTTT TTGGCTTTGTGTTTTGTCCTAAGACTCTAATCATTACANNNNNNNNNNCT GGCGGTTCACCCCTTTGCCCTCCCGATCCTTGTCCTCTTTTCTTTTTATT ATTTTTTTTGGGTTCCCCCCCCCCCCCCCCCCCACGCGTGCCGATCGTTC GTTTCGCGTCCATATTGGTGTGTGTGTTTTGCGACGAATCTACCCATCCA TCAGATAACTCCGCAGGACGAGTTCTTGGTGCTGGCATGTGACGGTGTAT TTGACGTTCTCACGAGCGAGGAGGTCGTCGCCAACGTCTACGAGAAGATG AAGATACACGCCGACGCCCAAAGGTATGTATTTCTTTTCTTGGACTTGGG AGTGTCGTTTCCGCCTCCCCCCCCCCCCCGCTTGTTGTGTTGTGGTTCAT ACCACGTAGCCCATGCACGAGCTGTGTTTTGAAGTGCACAGGTTAGGTTT GAAGTGTTAGTTTTTTTTTGTTATGGTTTGGGTCAGGTATCGTCTCCCCT TATTTCTTATTTGGACGAGACGGGAGCGAAGGGTCGTGGCCAAGTCTTGG TCTTTCCAGTACTGTATTTTATTCCATGCATACCCTCTCCCTTTGTCCGT GTGATTTTCCTCGTGGTTGATGATCAAGTCGCATATTTTAACACATGAAA CACTCGTGAACACAATAAACAGGTGCTGCGAGGACCTCACCGAGAAAGCC ATCGTGGAGAGAAGGACAAGAGATAACGTCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9725:4511..5693-

>mRNA_E_fasciculatus_S2_contig9725.17726.1 ID=mRNA_E_fasciculatus_S2_contig9725.17726.1|Name=mRNA_E_fasciculatus_S2_contig9725.17726.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9725:4511..5693- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGAGAGAGAGACTGCGTACGCTCAACTCATCACGGCCGAGCCTGA
ATTCCTGGTGTCGGAGATAACTCCGCAGGACGAGTTCTTGGTGCTGGCAT
GTGACGGTGTATTTGACGTTCTCACGAGCGAGGAGGTCGTCGCCAACGTC
TACGAGAAGATGAAGATACACGCCGACGCCCAAAGGTGCTGCGAGGACCT
CACCGAGAAAGCCATCGTGGAGAGAAGGACAAGAGATAACGTCAGC
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