mRNA_E_fasciculatus_S2_contig9724.17725.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9724.17725.1
Unique NamemRNA_E_fasciculatus_S2_contig9724.17725.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9724.17725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 7.930e-123
Identity = 287/355 (80.85%), Postives = 290/355 (81.69%), Query Frame = 1 
Query:    1 QYQEAFVHYLIAAEQGNKEGQASLAWLLDRSIAAVPSGTSWPSSLVRRAWDSLVRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SGVGGVADAVRQMGGDPEAMARRYRRLAAEQGDSEARCDIADHLYRQAKDKGAVAPGTGWLPAWARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------GGIGAATGG----YGRESEDERLARESDAAQLLSDAVAYYRLAAEGGREEGGLGERSPSQRGLFSLGWMHQHGVGVEADPSLARELYRRSGSAPALLGLWMMGASDLVLEVGAPLAVSAVVVAATM 999
            QYQEAFVHYLIAAEQGNKEGQASLAWLLDRS+AA   GTSWPSSLVRRAWDSLV DGXXXXXXXXXXXXX                        XXXXXXXXXX         SGVGGVADAVRQMGGDPEAMARRYRRLAAEQGDSEARCDIADHLYRQAKD GAVAPGTGWLPAWARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              GGIGA        YGRESEDERLARESDAAQLLSDAVAYYRLAAEGGR EGGLG  SPSQRGLFSLGWMHQHGVGVEADP+LARELYRRSGSAPALLGLWMMGASDL LE+GAPLAVS VVVAATM
Sbjct:  716 QYQEAFVHYLIAAEQGNKEGQASLAWLLDRSMAAAAPGTSWPSSLVRRAWDSLVGDGXXXXXXXXXXXXXDIGPSGGDERVEDASGWPDEGGSGXXXXXXXXXXMRRGRRRRRSGVGGVADAVRQMGGDPEAMARRYRRLAAEQGDSEARCDIADHLYRQAKDMGAVAPGTGWLPAWARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKPIGQGGIGATXXXXXXXYGRESEDERLARESDAAQLLSDAVAYYRLAAEGGRGEGGLGGSSPSQRGLFSLGWMHQHGVGVEADPALARELYRRSGSAPALLGLWMMGASDLALEIGAPLAVSVVVVAATM 1070
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BLAST of mRNA_E_fasciculatus_S2_contig9724.17725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW92_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.800e-71
Identity = 166/186 (89.25%), Postives = 169/186 (90.86%), Query Frame = 1 
Query:  481 GAVAPGTGWLPAWARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GGIGAATGG----YGRESEDERLARESDAAQLLSDAVAYYRLAAEGGREEGGLGERSPSQRGLFSLGWMHQHGVGVEADPSLARELYRRSGSAPALLGLWMMGASDLVLEVGAPLAVSAVVVAATMLAMR 1011
            GAVAPGTGWLPAWART XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      GGIGA TGG    YGRESEDERLARESDAAQLLSDAVAYY+LAAEGG  EGGLG  SPSQRGLFSLGWMHQHGVGVEADP+LARELYRRSGSAPALLGLWMMGASDL LE+GAPLAVSAVVVAATMLAMR
Sbjct:    2 GAVAPGTGWLPAWARTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKPIGKGGIGATTGGSGGGYGRESEDERLARESDAAQLLSDAVAYYKLAAEGGGGEGGLGGSSPSQRGLFSLGWMHQHGVGVEADPALARELYRRSGSAPALLGLWMMGASDLALEIGAPLAVSAVVVAATMLAMR 187
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BLAST of mRNA_E_fasciculatus_S2_contig9724.17725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY48_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.230e-21
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:  835 HGVGVEADPSLARELYRRSGSAPALLGLWMMGASDLVLEVGAPLAVSAVVVAATMLAMR 1011
            HGVGVEADP+LARELYRRSGS PALLGLWMMGASDL LE+GAP AVSAV VAATMLAMR
Sbjct:    9 HGVGVEADPALARELYRRSGSTPALLGLWMMGASDLALEIGAPRAVSAVRVAATMLAMR 67
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9724.17725.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J774_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.620e-12
Identity = 70/106 (66.04%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:   79 LLDRSIAAVPSGTSWPSSLVRRAWDSLVRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SGVGGVADAVRQMGGDPEAMAR 393
            LLDRS+AA P+GTSWPSSLVRRAW+SLV DGXXXXXXXXX                              XXXXXXXXXXXXX SGVGGVADAVRQMGGDPEAMAR
Sbjct:   57 LLDRSMAAAPAGTSWPSSLVRRAWESLVGDGXXXXXXXXXADSGPSGGDERVKDAMASGWPDEERSAGGSXXXXXXXXXXXXXXSGVGGVADAVRQMGGDPEAMAR 162
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9724.17725.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.930e-12380.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.800e-7189.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.230e-2189.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.620e-1266.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9724contigE_fasciculatus_S2_contig9724:2923..5714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1288
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-02_003670.2
Cds size1287
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.2793772-CDS-E_fasciculatus_S2_contig9724:2922..30131696842617.2793772-CDS-E_fasciculatus_S2_contig9724:2922..3013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9724 2923..3013 -
1696842617.2929215-CDS-E_fasciculatus_S2_contig9724:3179..35411696842617.2929215-CDS-E_fasciculatus_S2_contig9724:3179..3541Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9724 3180..3541 -
1696842617.306581-CDS-E_fasciculatus_S2_contig9724:4299..46961696842617.306581-CDS-E_fasciculatus_S2_contig9724:4299..4696Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9724 4300..4696 -
1696842617.3203702-CDS-E_fasciculatus_S2_contig9724:5277..57141696842617.3203702-CDS-E_fasciculatus_S2_contig9724:5277..5714Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9724 5278..5714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9724.17725.1prot_E_fasciculatus_S2_contig9724.17725.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9724 2923..5714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9724.17725.1

>prot_E_fasciculatus_S2_contig9724.17725.1 ID=prot_E_fasciculatus_S2_contig9724.17725.1|Name=mRNA_E_fasciculatus_S2_contig9724.17725.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=429bp
QYQEAFVHYLIAAEQGNKEGQASLAWLLDRSIAAVPSGTSWPSSLVRRAW
DSLVRDGGGGGGGGGADSGPSGGDGTVEDEDDSGWSNEGGSGGGSGAALG
SGSRRRRRRSGVGGVADAVRQMGGDPEAMARRYRRLAAEQGDSEARCDIA
DHLYRQAKDKGAVAPGTGWLPAWARTTTTTSNNNNNADEDDKSHQQRSKT
RRERSSEGGEEGGIGAATGGYGRESEDERLARESDAAQLLSDAVAYYRLA
AEGGREEGGLGERSPSQRGLFSLGWMHQHGVGVEADPSLARELYRRSGSA
PALLGLWMMGASDLVLEVGAPLAVSAVVVAATMLAMRFRNRRRRGGSGGG
RGRRQRQPVQGVAAAAAVAGGRGRRGGGGGGGGGGGGMGGSAFLMTGEGE
GYGEREEGELVADAATAVGEEPREAREG*
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mRNA from alignment at E_fasciculatus_S2_contig9724:2923..5714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9724.17725.1 ID=mRNA_E_fasciculatus_S2_contig9724.17725.1|Name=mRNA_E_fasciculatus_S2_contig9724.17725.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2792bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9724:2923..5714- (Ectocarpus fasciculatus EfasUO2)
CAGTACCAAGAGGCGTTCGTGCACTACCTCATCGCCGCCGAGCAAGGCAA
CAAGGAGGGCCAGGCCTCCTTGGCGTGGCTGCTGGACAGGAGCATCGCTG
CCGTGCCCTCGGGCACTTCCTGGCCCTCTTCGCTGGTGCGCCGGGCGTGG
GACAGCCTTGTGCGCGACGGTGGCGGTGGCGGTGGCGGTGGCGGTGCCGA
TAGCGGGCCAAGCGGTGGCGATGGAACCGTCGAAGACGAAGATGACAGTG
GTTGGTCCAACGAAGGAGGAAGCGGCGGTGGTAGCGGTGCGGCCTTAGGT
AGCGGGAGTCGGAGGAGGAGGAGGAGGAGCGGTGTTGGCGGCGTTGCCGA
CGCCGTCCGCCAGATGGGCGGGGACCCCGAAGCAATGGCGCGCCGCTACC
GTAGGCTCGCGGCGGAGCAGGGGGACTCTGAAGCGAGGTGAGTGTAACGT
TGCTTTTTTTTTGTCATGACAAAATCCACGGTATGCTGGTGGCTTTTTAA
CTCTGACGGTCATATGCGCATGTTGTTACCTTTATGGTGCTTGGTTCCTA
GCCAGAATGTACCTCAAAAGTTGAGCTTGAAGTAGCTTGCTTGCCGACAG
CCCCTTTTTTTTGCAAGGTTAACACGGAAGGGTGAGTTTGTGCCGAGCGT
TGCGTGGACTTACCCCCAAAGAATCTGAACAGTCAGAAAGCACCGACACT
GTTGTGTTGCAGGTACCACACAAGACAACACATGACACCCCCTCACGCAG
TACCACACCCGTTGGGAATATTTCTATGGATGAACATGAGCGCAATAGGG
CCATACAAGGTACCACCCACCGCTCCGCACACAGTATCACGAAACGCTTG
TGTTCTTTTTGGAAGCCAAAAGTGTTGATCGAAACGGGGGTGTTTTCTTG
TGTGGTAGTATGGCATGGCCAACCAGGCGCCAAGTGTGGCGTGAGGACAC
CAACACACCTTCGTCTCCCCTCTCCTCTCTAATGTATCAATCGCGCACGC
ACGCTTTTTTGTCGACAGGTGCGACATTGCCGACCACCTGTACCGGCAGG
CGAAGGACAAGGGGGCCGTCGCGCCGGGCACCGGTTGGTTGCCCGCATGG
GCCCGAACCACCACCACCACCAGCAACAACAACAACAACGCCGACGAGGA
CGACAAAAGCCATCAACAGAGGAGCAAGACGCGTCGCGAACGGAGTAGCG
AAGGAGGAGAAGAAGGGGGGATCGGAGCGGCTACGGGCGGCTACGGGCGC
GAGAGCGAGGACGAGCGGCTAGCGCGGGAGAGCGACGCGGCGCAGCTGCT
GTCGGACGCGGTGGCGTACTACAGGCTTGCGGCGGAGGGGGGGCGGGAAG
AGGGAGGCCTGGGAGAGCGTAGTCCCAGCCAACGGGGCTTGTTCTCCCTG
GGTTGGATGCACCAGGTGAGCAGTTGCAGTTTCATTCCTTCACTCCACGA
CCACCGTGTTTGTTTGTTTCATACCGTTTTTGTTTTTAGTTTTTCATATA
TATATATTTTGTTTTTTCCCTTTTTATGGTCTTTTTTTTGTGTGCCTTGT
TCTCGACGTCCAGTAGTCGGATGCTTTTTCGGGCCGTTGTGTTGGGCACT
GCCGTCTGTCCGTGGCACTGGGTCTTTTTACCGGCTTGTGGTCAATGTGT
TGAGGCCATGGTTGTGCAGCGGCAGGGGTCGTGCTGAAGGCCCACGTAGT
CCTTCTCCATCCCAAGACCAACTCGAACGTTTCCGGGATGATTCCGTTGC
CGGGAAACACGTACGTACGGTAAGAGGCACGGAACGGGTCCATCAAACCC
AACCCCATCCAGCAAGTCTCCTTCTCCGTCTTTTCCTCCCGTAGAACTTG
CTGCCCTACAAACGACGACCGTACTTAGCATGGTTGGTCTCATTACCAAT
AAATGCTTTGCTCGTTAACCCCTTCCGGTCTCGCGTGACTTGTTAATCTT
TTCCACCTCCTCCTGCGTGACCCTGGATGGCTGTAGTTGTAGTTGTACGA
AAAAATACACTGAAAGGTGAAGTACTCTACGTACACTCTAGTACACGTCT
CGCCACGCAAAATGGGGGGACTGTCGCCATTATCCAGGACGAAAACAAAA
AATACCACCTCGCCGCTGATGACTAACCGCCGTTCTCGCGTTTTTCATTC
GCCGCCCACCGGCCACACAACAGCACGGGGTGGGCGTCGAGGCCGACCCG
TCTCTAGCGCGAGAGCTCTACCGACGGTCGGGGTCCGCCCCGGCGTTGCT
GGGCCTCTGGATGATGGGGGCGTCGGACCTCGTGCTGGAGGTCGGAGCTC
CGCTAGCGGTGTCGGCGGTCGTCGTGGCGGCCACGATGCTCGCGATGAGG
TTCCGGAATAGGCGGCGCCGGGGCGGGAGCGGGGGCGGAAGGGGCCGCCG
CCAACGCCAACCCGTTCAAGGAGTAGCAGCAGCAGCAGCGGTAGCAGGCG
GGAGGGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTGGG
ATGGGGGGGAGCGCCTTTCTGATGACGGGGGAGGGGTAGGGCGGGAGAGG
GGAAGGAGGGGGGGTGGCTGNNNNNNNNNNAGGGAAGAGGAGAAGGGAGA
GGAGGAGGGGGGGGGGGGGGGGGGGGGAGGAGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGCGCCTTTCTGATCGCGA
GGGAAGGGTACGGAGAGAGAGAGGAAGGAGAGTTGGTTGCTGATGCCGCG
ACCGCTGTGGGGGAGGAACCGCGGGAGGCGAGAGAGGGATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9724:2923..5714-

>mRNA_E_fasciculatus_S2_contig9724.17725.1 ID=mRNA_E_fasciculatus_S2_contig9724.17725.1|Name=mRNA_E_fasciculatus_S2_contig9724.17725.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1287bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9724:2923..5714- (Ectocarpus fasciculatus EfasUO2)
CAGTACCAAGAGGCGTTCGTGCACTACCTCATCGCCGCCGAGCAAGGCAA
CAAGGAGGGCCAGGCCTCCTTGGCGTGGCTGCTGGACAGGAGCATCGCTG
CCGTGCCCTCGGGCACTTCCTGGCCCTCTTCGCTGGTGCGCCGGGCGTGG
GACAGCCTTGTGCGCGACGGTGGCGGTGGCGGTGGCGGTGGCGGTGCCGA
TAGCGGGCCAAGCGGTGGCGATGGAACCGTCGAAGACGAAGATGACAGTG
GTTGGTCCAACGAAGGAGGAAGCGGCGGTGGTAGCGGTGCGGCCTTAGGT
AGCGGGAGTCGGAGGAGGAGGAGGAGGAGCGGTGTTGGCGGCGTTGCCGA
CGCCGTCCGCCAGATGGGCGGGGACCCCGAAGCAATGGCGCGCCGCTACC
GTAGGCTCGCGGCGGAGCAGGGGGACTCTGAAGCGAGGTGCGACATTGCC
GACCACCTGTACCGGCAGGCGAAGGACAAGGGGGCCGTCGCGCCGGGCAC
CGGTTGGTTGCCCGCATGGGCCCGAACCACCACCACCACCAGCAACAACA
ACAACAACGCCGACGAGGACGACAAAAGCCATCAACAGAGGAGCAAGACG
CGTCGCGAACGGAGTAGCGAAGGAGGAGAAGAAGGGGGGATCGGAGCGGC
TACGGGCGGCTACGGGCGCGAGAGCGAGGACGAGCGGCTAGCGCGGGAGA
GCGACGCGGCGCAGCTGCTGTCGGACGCGGTGGCGTACTACAGGCTTGCG
GCGGAGGGGGGGCGGGAAGAGGGAGGCCTGGGAGAGCGTAGTCCCAGCCA
ACGGGGCTTGTTCTCCCTGGGTTGGATGCACCAGCACGGGGTGGGCGTCG
AGGCCGACCCGTCTCTAGCGCGAGAGCTCTACCGACGGTCGGGGTCCGCC
CCGGCGTTGCTGGGCCTCTGGATGATGGGGGCGTCGGACCTCGTGCTGGA
GGTCGGAGCTCCGCTAGCGGTGTCGGCGGTCGTCGTGGCGGCCACGATGC
TCGCGATGAGGTTCCGGAATAGGCGGCGCCGGGGCGGGAGCGGGGGCGGA
AGGGGCCGCCGCCAACGCCAACCCGTTCAAGGAGTAGCAGCAGCAGCAGC
GGTAGCAGGCGGGAGGGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGTGGGATGGGGGGGAGCGCCTTTCTGATGACGGGGGAGGGGGAA
GGGTACGGAGAGAGAGAGGAAGGAGAGTTGGTTGCTGATGCCGCGACCGC
TGTGGGGGAGGAACCGCGGGAGGCGAGAGAGGGATAA
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