mRNA_E_fasciculatus_S2_contig9722.17724.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9722.17724.1
Unique NamemRNA_E_fasciculatus_S2_contig9722.17724.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9722.17724.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ3_ECTSI)

HSP 1 Score: 572 bits (1474), Expect = 1.050e-201
Identity = 290/335 (86.57%), Postives = 309/335 (92.24%), Query Frame = 1 
Query:   16 APQVFCEKEFLSEENALKVIAPKTLAAREEMSHHVQASDSLEPLGVCQACTLRPPCQHISEQELASRGMRRRMELPQRGWPKESLQGGKPGTGDGEKDSVDCQGFVKRGACRSFNERGRCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRNLHTFCVAAGARIKKRIGRLHRLLKTGGGGGDSKQQPGSTTKSTIEASGDAGKHEGAPGRTNRAADSTPDSPTVATDKNP--TKGSKQQQRSTFESRARKANSRGVEAVVAKLGEIGRDLDSQRAWTTDTRTPGGGMHEFRASVFDKKLERLFRRCEEAHEEADAVSEAYLLSLENMR 1014
            A +VFCE+EFLSEENALK IAPKTLAAREEMSHHV+ASDSLEPLGVCQACTLRPPCQHISEQELASRGMRRRMELPQR  P+ES Q GK G GDGEKD VDCQ FV RGACRSFNERGRCSNHHPLDAHVVE+PKPRCPQCTIRLPCGHCDYDQSRR+LHTFC AAGARI+KRIGRLHRLLKTGGGGGD+KQQPGS TKST++ASGDAG HEGA GRTNR  D+T DSPTVA +KNP  TK +KQQQRSTFESRA KAN RGVEAV++KLGEIGRDL++QRAWTTDTRTPGGGMHEFRASVFDKKLERLFRRCEEA+EEADA SEAYLL LEN+R
Sbjct:  180 ANKVFCEREFLSEENALKAIAPKTLAAREEMSHHVKASDSLEPLGVCQACTLRPPCQHISEQELASRGMRRRMELPQRRGPQESTQEGKGGKGDGEKDFVDCQDFVMRGACRSFNERGRCSNHHPLDAHVVEVPKPRCPQCTIRLPCGHCDYDQSRRSLHTFCEAAGARIQKRIGRLHRLLKTGGGGGDNKQQPGSMTKSTVKASGDAGGHEGAQGRTNRTTDNTRDSPTVAANKNPSATKSAKQQQRSTFESRASKANRRGVEAVLSKLGEIGRDLEAQRAWTTDTRTPGGGMHEFRASVFDKKLERLFRRCEEANEEADAESEAYLLLLENVR 514
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BLAST of mRNA_E_fasciculatus_S2_contig9722.17724.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZM9_AURAN)

HSP 1 Score: 132 bits (333), Expect = 1.490e-30
Identity = 69/162 (42.59%), Postives = 87/162 (53.70%), Query Frame = 1 
Query:   22 QVFCEKEFLSEENALKVIAPKTLAAREEMSHHVQASDSLEPLGVCQACTLRPPCQHISEQELASRGMRRRMELPQRGWPKESLQGGKPGTGDGEKDSVDCQGFVKRGACRSFNERGRCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRNLHTFCV 507
            +VF + E+ S  N  K  AP    A+ +++      D   P+  C  CTLRPPCQH+SEQELA+RG+ RR +LP+R                   DS+DC  FVK G+CR FNE G CS  HP   H V +P  RCPQCT+  PC HC +  SR  L   C 
Sbjct:  311 RVFAKWEYASYVNVCKEFAPDAFNAKRKIAAKAALGD---PIDRCAVCTLRPPCQHVSEQELATRGLARRAQLPER------------------DDSIDCTNFVKCGSCRVFNEFGHCSLDHPSTLHCVVLPPHRCPQCTLVWPCQHCSFSGSRNRLIESCT 451
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BLAST of mRNA_E_fasciculatus_S2_contig9722.17724.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQW6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.500e-20
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 1 
Query:   25 VFCEKEFLSEENALKVIAPKTLAARE--EMSHHVQASDSLEPLGVCQACTLRPPCQHISEQELASRGMRRRMELPQRGWPKESLQGGKPGTGDGEKDSVDCQGFVKRGACRSFNERGRCSNHHPLDAHVVEIPKPRCPQCTI 444
            VF +++++S EN +KV   K   A +   +S H     ++EP   C+ CTL PPCQH++ +EL  RG+ RR ELP+                  +  S+ C  FV+ G C  FNE G CS  HP + HVV+    RCPQC+I
Sbjct:   12 VFLKEQYISRENVMKVTTGKAGDASDLPVISQH----RAVEPFDRCKLCTLLPPCQHVTMEELIQRGIARRKELPRY-----------------KVGSMSCPSFVRYGYCVMFNEHGHCSLDHPKNLHVVKKFAVRCPQCSI 132
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9722.17724.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.050e-20186.57protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ3... [more]
AAA1.490e-3042.59domain-containing protein n=1 Tax=Aureococcus anop... [more]
Hypothetical3.500e-2038.03protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9722contigE_fasciculatus_S2_contig9722:2641..5494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score579.7
Seed ortholog evalue8.8e-163
Seed eggNOG ortholog2880.D7FMQ3
Model size1017
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2C4V1@1,2RY2V@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-23_001180.1
Cds size1017
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.211683-CDS-E_fasciculatus_S2_contig9722:2640..31291696842617.211683-CDS-E_fasciculatus_S2_contig9722:2640..3129Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9722 2641..3129 -
1696842617.2253604-CDS-E_fasciculatus_S2_contig9722:3445..35381696842617.2253604-CDS-E_fasciculatus_S2_contig9722:3445..3538Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9722 3446..3538 -
1696842617.2367013-CDS-E_fasciculatus_S2_contig9722:4150..43841696842617.2367013-CDS-E_fasciculatus_S2_contig9722:4150..4384Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9722 4151..4384 -
1696842617.2479427-CDS-E_fasciculatus_S2_contig9722:5293..54941696842617.2479427-CDS-E_fasciculatus_S2_contig9722:5293..5494Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9722 5294..5494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9722.17724.1prot_E_fasciculatus_S2_contig9722.17724.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9722 2641..5494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9722.17724.1

>prot_E_fasciculatus_S2_contig9722.17724.1 ID=prot_E_fasciculatus_S2_contig9722.17724.1|Name=mRNA_E_fasciculatus_S2_contig9722.17724.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=339bp
MTCFRAPQVFCEKEFLSEENALKVIAPKTLAAREEMSHHVQASDSLEPLG
VCQACTLRPPCQHISEQELASRGMRRRMELPQRGWPKESLQGGKPGTGDG
EKDSVDCQGFVKRGACRSFNERGRCSNHHPLDAHVVEIPKPRCPQCTIRL
PCGHCDYDQSRRNLHTFCVAAGARIKKRIGRLHRLLKTGGGGGDSKQQPG
STTKSTIEASGDAGKHEGAPGRTNRAADSTPDSPTVATDKNPTKGSKQQQ
RSTFESRARKANSRGVEAVVAKLGEIGRDLDSQRAWTTDTRTPGGGMHEF
RASVFDKKLERLFRRCEEAHEEADAVSEAYLLSLENMR*
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mRNA from alignment at E_fasciculatus_S2_contig9722:2641..5494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9722.17724.1 ID=mRNA_E_fasciculatus_S2_contig9722.17724.1|Name=mRNA_E_fasciculatus_S2_contig9722.17724.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2854bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9722:2641..5494- (Ectocarpus fasciculatus EfasUO2)
ATGACATGTTTCCGTGCGCCGCAGGTGTTCTGCGAGAAGGAGTTCTTGAG
CGAGGAAAACGCTCTCAAGGTCATTGCTCCGAAGACTCTGGCGGCACGAG
AGGAGATGTCTCACCACGTGCAAGCGTCCGACTCCCTCGAGCCGCTCGGC
GTGTGCCAGGCGTGCACCCTCCGCCCCCCTTGCCAGCATATTTCTGAACA
GGTACGTGAGTGTGGGGTTGCGGTTGCTATCGTAGTAGTTTTTGTGGAGG
GTTCGGTTGTTGTTGTTGCTCTTCTTCTTGTTGTTGTTCTTCTTCTTTTC
TTCTTTTTCTTCATCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCT
GTTGCTCATGGTGTTTCTCGCTTTCTTCGTGAGCTGTCTACTATTGTTGG
TGCGGTCGTTGTTTTCCTAACCGCACCTTCCCCTCTAGCACGTCCTCAAT
CCAGCCATGCACGTTTTCAACGCGTCGTAAAATTTCAAGACTGTGCAAGT
TCCACTCCATTTCCTCTGATCAGGTCACGTACATGTCCCGAGCACTTTCC
ACCTACACATGATGCTTTTTCGATAATTGCTGACCCTGATGACAACCATC
TAGTTTTTCAATGGCATACTCAAAAGTGCCTCTCTCGATCACTATTCTCA
GCCAGTGAACTCCCAAGGTAGATTGATTCTGAAGCGAGTCGGGGCCAAAC
AAAAGCACCATTTTGAATCGATATCGGAGGCGTTTCCGATAACGATCTCG
CCGTGCCCTTCCTCACCCTCATATAGTCGGAAGAAATACGCGTCCCTCTT
CCGGCAACGTTGGCGATGCGACGAACCGTGATCCCTTCCACCGCTTGGTG
GGGCAAGAGACGTTGTTCGCGTCGGCGAGGCTCAGAGCATATCTTATCGA
GCTTTGTTTCTTGACCTTTTTGTTGTAGTGGATTGAGCTCCCCATTGACA
ATATCACACATTTATCTTGTCTTGCTTCGGTGGGCGCAACATATCACTTC
GCCTTTCCGCGCGTCCACACATAGTATATCACTCTACCTTTCCGCACGTG
CACATGCAGTATATTGATACCAGAAACCAATTTGAACCCTATACCGCCGT
TGTTGCGCAGGAGCTCGCGAGCCGGGGCATGCGGAGGAGGATGGAGCTTC
CCCAACGAGGGTGGCCAAAGGAATCTCTACAAGGAGGGAAGCCGGGTACG
GGCGACGGGGAGAAGGATTCCGTGGACTGTCAGGGTTTCGTAAAGCGAGG
GGCGTGTCGTTCCTTCAACGAGCGGGGGCGCTGCAGCAACCATCACCCTC
TGGACGCGCACGTCGTAGAGATCCCGAAGCCGAGGTGCCCCCAGGTGAGG
GATTTTCGGTCCCGGTCGTTGCTTGCCGTGCGTGTTGTCTGGACTATGTA
GTGACTCCCTCTCTCCGTTCGTGGACATGGCAGTTGTTACGCTCGTTTGT
TGCAGGTTGTACGTGAGCGTCTGCCGTGCATGCTAGTTGGCAACAACTTT
CTCACGCCGACTTGCTTGCAGCACGCTGTCGCCTTGGGAGATTTATAAAA
TTGTGGCCCGCCGGCGCTTGGGCCAGTTCGGCCAGGCCGCACTTGTCAAT
TGCCCCGCTCGCCGCTGTGAGTGTGGGCCAGAGGAAGCTACAGTTGTGTG
TTTTCGGTGCGGGCTCTTTTCGCGACACGCTCCATTTCGGGCTCGACAAG
CGTTGAGGGAGTTTCGCCATAGACAGACACAGTCATGTTCCCGAAACGAG
ACATAAAATCATCGTCTTGCGCTACCCCTCAGTTCTCTCGATCACGACAT
TATCGGCTGTTGTAACCTTCTTCATGCCATATTTGAACAAGCTGCAATAC
ACCGAACACACGTCTACGGTTGCCCGTACCCAAGCCCCCCCCGTGCGCCA
CGTATCTTGCGCCACAACGTTTACGAACGCCTTCCGCTGTGTGGGGCCAA
CTGCAGTGCACGATACGTCTCCCGTGCGGCCACTGCGATTACGACCAGTC
AAGGAGGAACCTCCACACTTTCTGCGTAGCCGCAGGGGCTAGGATAAAGG
TACAGGCCTGCTTAGGATGTGGTCGCGGCGTGGCGTAGGGTGATTTCAGT
AGTGTTTAGAGATGGTGTGCATTGACTACTGTGTAGAAATTAGTTGCCAC
GAGGTTTCGCGGCCCATCTGAACACGGTTTCGATGTTAGACTCTTCCACC
GCCCGCCCTCCAAACCAGGCAGCGATCCCTACTTTCGGCTGTCCCTAGCG
TTGCCCCGCCACGCGACGGCCTCTCTGTTACGACGTCGGGATACACTTCC
GAAAAACGTCAGCTTGCACGCGCATGGTTTCGTGCGTCTTTGGTCGCAAC
ACAAAATCGCCACAGAAGCGCATAGGTCGACTACACCGGCTCTTGAAGAC
GGGCGGCGGTGGTGGGGACAGTAAGCAGCAGCCAGGATCGACAACGAAGT
CAACAATCGAAGCGAGTGGCGACGCCGGAAAGCACGAGGGGGCGCCGGGT
CGCACCAACAGAGCCGCCGACAGCACCCCCGATTCGCCCACCGTCGCTAC
AGACAAGAACCCAACCAAGGGCTCCAAGCAGCAGCAAAGGTCTACCTTTG
AAAGCCGTGCCAGAAAGGCCAACAGCCGCGGCGTGGAGGCCGTGGTGGCG
AAGCTTGGCGAGATCGGCAGGGATCTCGACTCACAGCGAGCTTGGACCAC
AGACACTAGGACACCAGGTGGAGGCATGCACGAGTTTCGGGCGTCGGTTT
TCGACAAGAAGCTGGAGAGGTTGTTCCGGCGGTGCGAAGAGGCCCACGAG
GAGGCGGACGCGGTGTCGGAGGCGTACTTGCTGAGTCTGGAAAACATGCG
GTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9722:2641..5494-

>mRNA_E_fasciculatus_S2_contig9722.17724.1 ID=mRNA_E_fasciculatus_S2_contig9722.17724.1|Name=mRNA_E_fasciculatus_S2_contig9722.17724.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1017bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9722:2641..5494- (Ectocarpus fasciculatus EfasUO2)
ATGACATGTTTCCGTGCGCCGCAGGTGTTCTGCGAGAAGGAGTTCTTGAG
CGAGGAAAACGCTCTCAAGGTCATTGCTCCGAAGACTCTGGCGGCACGAG
AGGAGATGTCTCACCACGTGCAAGCGTCCGACTCCCTCGAGCCGCTCGGC
GTGTGCCAGGCGTGCACCCTCCGCCCCCCTTGCCAGCATATTTCTGAACA
GGAGCTCGCGAGCCGGGGCATGCGGAGGAGGATGGAGCTTCCCCAACGAG
GGTGGCCAAAGGAATCTCTACAAGGAGGGAAGCCGGGTACGGGCGACGGG
GAGAAGGATTCCGTGGACTGTCAGGGTTTCGTAAAGCGAGGGGCGTGTCG
TTCCTTCAACGAGCGGGGGCGCTGCAGCAACCATCACCCTCTGGACGCGC
ACGTCGTAGAGATCCCGAAGCCGAGGTGCCCCCAGTGCACGATACGTCTC
CCGTGCGGCCACTGCGATTACGACCAGTCAAGGAGGAACCTCCACACTTT
CTGCGTAGCCGCAGGGGCTAGGATAAAGAAGCGCATAGGTCGACTACACC
GGCTCTTGAAGACGGGCGGCGGTGGTGGGGACAGTAAGCAGCAGCCAGGA
TCGACAACGAAGTCAACAATCGAAGCGAGTGGCGACGCCGGAAAGCACGA
GGGGGCGCCGGGTCGCACCAACAGAGCCGCCGACAGCACCCCCGATTCGC
CCACCGTCGCTACAGACAAGAACCCAACCAAGGGCTCCAAGCAGCAGCAA
AGGTCTACCTTTGAAAGCCGTGCCAGAAAGGCCAACAGCCGCGGCGTGGA
GGCCGTGGTGGCGAAGCTTGGCGAGATCGGCAGGGATCTCGACTCACAGC
GAGCTTGGACCACAGACACTAGGACACCAGGTGGAGGCATGCACGAGTTT
CGGGCGTCGGTTTTCGACAAGAAGCTGGAGAGGTTGTTCCGGCGGTGCGA
AGAGGCCCACGAGGAGGCGGACGCGGTGTCGGAGGCGTACTTGCTGAGTC
TGGAAAACATGCGGTAG
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